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NSR Physiome Models

Models available for running through your web browser as a JAVA applet or for download. Models written in JSim MML unless otherwise noted.

• Indexed Model list and search.
• Browse Models.
• Tutorials.


• CVS archive of NSR Physiome models.

JSim Model Standards and General Modelling Guidlines.

Other Physiology models (models from other sources that either run stand-alone, converted to JSim, or on different simulation platforms).

• Models converted to run in JSim:
  • EMBL-EBI Biomodels.
  • JWS Online models.
  • Kegg Pathway models.
  • CellML models.
• Event-Tracking Model of Adhesion. La Jolla Institute for Allergy and Immunology Division of Inflammation Biology.
  Event-Tracking Model of Adhesion (ETMA) is a direct, 3D, stochastic, pi-calculus driven model of leukocyte rolling, progressing by varying time steps and tracking consecutive bond formation and dissociation events.
• Physiome sites with models.

NSR Physiome legacy models (models and documentation for XSim and older fortran models).

• XSim models runnable in JSim.
• Archived XSim model documents.
• Archived XSim documents.

[This page was last modified 13Dec11, 10:11 am.]

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.