Documentation History
1. MMID4 Overview
- 1.1. What Is MMID4?
- 1.2. Vascular Components
- 1.2.1. Nonexchanging vessels
- 1.2.2. Exchange units
- 1.3. Additional Features
- 1.3.1. Input function generation
- 1.3.2. Heterogeneity
- 1.3.3. Parameter tools
2. MMID4 Tutorial
- 2.1. Getting Started
- 2.1.1. Overview
- 2.1.2. The XSIM simulation interface
- 2.1.3. Setting up a XSIM environment
- 2.1.4. Running the MMID4 model
- 2.1.5. Summary
- 2.2. Basic Exercises
- 2.2.1. Overview
- 2.2.2. Generating an input function
- 2.2.3. Configuring the model
- 2.2.4. Selecting results for display
- 2.2.5. Summary
- 2.3. Basic Indicator Dilution Principles
- 2.3.1. Overview
- 2.3.2. Mean transit time
- 2.3.3. Membrane conductances
- 2.3.4. The effect of cells on indicator dilution curves
- 2.3.5. Selecting an appropriate input function
- 2.3.6. Summary
- 2.4. Advanced Exercises
- 2.4.1. Introduction
- 2.4.2. The effect of tracer consumption
- 2.4.3. The effect of flow heterogeneity
- 2.4.4. The influence of nonexchanging vessels
- 2.4.5. Summary
- 2.5. Analysis Exercises
- 2.5.1. Introduction
- 2.5.2. Parameter optimization
- 2.5.3. Using deconvolution to generate an input function
- 2.5.4. Working with noisy data
3. MMID4 Reference
- 3.1. Overview
- 3.1.1. Model structure
- 3.1.2. MMID4, XSIM and the parameters
- 3.1.3. Using the MMID4 reference
- 3.2. Input Functions
- 3.2.1. General
- 3.2.2. Using reference data curves
- 3.2.3. Using deconvolution to generate a vascular tracer input curve
- 3.2.4. Using the function generator to generate a tracer input curve
- 3.2.5. Scale inputs to the vascular curve
- 3.2.6. Input function errors and messages
- 3.3. Heterogeneity
- 3.3.1. General
- 3.3.2. Flow Heterogeneity
- 3.3.3. Heterogeneous membrane conductances and consumption
- 3.3.4. Heterogeneity errors and messages
- 3.4. Vascular and BTEX Operators
- 3.4.1. Introduction
- 3.4.2. Plasma flow through vascular and BTEX operators
- 3.4.3. Vascular operators
- 3.4.4. BTEX operators
- 3.4.5. Vascular and BTEX operator errors and messages
- 3.5. Displaying Results
- 3.5.1. Introduction
- 3.5.2. Heterogeneity results
- 3.5.3. Tracer concentrations
- 3.5.4. Tissue contents (residues)
- 3.5.5. Residuals
- 3.5.6. Parameter expressions and scalars
- 3.5.7. Errors and messages
4. REPORTING BUGS
APPENDIX A. MMID4 TUTORIAL DATABASE CONTENTS
APPENDIX B. PLOTS FROM SELECTED TUTORIAL EXERCISES
Copyright © 1998,
National Simulation Resource, University of Washington.
Last modified 11:11am PST, February 27, 1998.