// This model generated automatically from SBML // unit definitions import nsrunit; unit conversion off; // SBML property definitions property sbmlRole=string; property sbmlName=string; property sbmlCompartment=string; // SBML reactions // ada: ATP <=> HX // ade: Ade // adna: dATP <=> DNA // adrnr: ATP <=> dATP // ampd: ATP <=> IMP // aprt: PRPP Ade <=> ATP // arna: ATP <=> RNA // asuc: IMP <=> SAMP // asli: SAMP <=> ATP // dada: dATP <=> HX // den: PRPP <=> IMP // dgnuc: dGTP <=> Gua // dnaa: DNA <=> dATP // dnag: DNA <=> dGTP // gdna: dGTP <=> DNA // gdrnr: GTP <=> dGTP // gmpr: GTP <=> IMP // gmps: XMP <=> GTP // gnuc: GTP <=> Gua // gprt: Gua PRPP <=> GTP // grna: GTP <=> RNA // gua: Gua <=> Xa // hprt: HX PRPP <=> IMP // hx: HX // hxd: HX <=> Xa // impd: IMP <=> XMP // inuc: IMP <=> HX // mat: ATP <=> SAM // polyam: SAM <=> Ade // prpps: R5P <=> PRPP // pyr: PRPP // rnaa: RNA <=> ATP // rnag: RNA <=> GTP // trans: SAM <=> ATP // ua: UA // x: Xa // xd: Xa <=> UA math main { realDomain time second; time.min=0; extern time.max; extern time.delta; // variable definitions real cell = 1 L; real PRPP(time) umol; real IMP(time) umol; real SAMP(time) umol; real ATP(time) umol; real SAM(time) umol; real Ade(time) umol; real XMP(time) umol; real GTP(time) umol; real dATP(time) umol; real dGTP(time) umol; real RNA(time) umol; real DNA(time) umol; real HX(time) umol; real Xa(time) umol; real Gua(time) umol; real UA(time) umol; real R5P = 18 umol; real Pi = 1400 umol; real ada(time) umol/min; real aada = .001062; real fada4 = .97; real ade(time) umol/min; real aade = .01; real fade6 = .55; real adna(time) umol/min; real aadna = 3.2789; real fdnap9 = .42; real fdnap10 = .33; real adrnr(time) umol/min; real aadrnr = .0602; real fadrnr4 = .1; real fadrnr9 = -0.3; real fadrnr10 = .87; real ampd(time) umol/min; real aampd = .02688; real fampd4 = .8; real fampd8 = -0.03; real fampd18 = -0.1; real aprt(time) umol/min; real aaprt = 233.8; real faprt1 = .5; real faprt4 = -0.8; real faprt6 = .75; real arna(time) umol/min; real aarna = 614.5; real frnap4 = .05; real frnap8 = .13; real asuc(time) umol/min; real aasuc = 3.5932; real fasuc2 = .4; real fasuc4 = -0.24; real fasuc8 = .2; real fasuc18 = -0.05; real asli(time) umol/min; real aasli = 66544; real fasli3 = .99; real fasli4 = -0.95; real dada(time) umol/min; real adada = .03333; real fdada9 = 1; real den(time) umol/min; real aden = 5.2728; real fden1 = 2; real fden2 = -0.06; real fden4 = -0.25; real fden8 = -0.2; real fden18 = -0.08; real dgnuc(time) umol/min; real adgnuc = .03333; real fdgnuc10 = 1; real dnaa(time) umol/min; real adnaa = .001938; real fdnan12 = 1; real dnag(time) umol/min; real adnag = .001318; real gdna(time) umol/min; real agdna = 2.2296; real gdrnr(time) umol/min; real agdrnr = .1199; real fgdrnr8 = .4; real fgdrnr9 = -1.2; real fgdrnr10 = -0.39; real gmpr(time) umol/min; real agmpr = .3005; real fgmpr2 = -0.15; real fgmpr4 = -0.07; real fgmpr7 = -0.76; real fgmpr8 = .7; real gmps(time) umol/min; real agmps = .3738; real fgmps4 = .12; real fgmps7 = .16; real gnuc(time) umol/min; real agnuc = .2511; real fgnuc8 = .9; real fgnuc18 = -0.34; real gprt(time) umol/min; real agprt = 361.69; real fgprt1 = 1.2; real fgprt8 = -1.2; real fgprt15 = .42; real grna(time) umol/min; real agrna = 409.6; real gua(time) umol/min; real agua = .4919; real fgua15 = .5; real hprt(time) umol/min; real ahprt = 12.569; real fhprt1 = 1.1; real fhprt2 = -0.89; real fhprt13 = .48; real hx(time) umol/min; real ahx = .003793; real fhx13 = 1.12; real hxd(time) umol/min; real ahxd = .2754; real fhxd13 = .65; real impd(time) umol/min; real aimpd = 1.2823; real fimpd2 = .15; real fimpd7 = -0.09; real fimpd8 = -0.03; real inuc(time) umol/min; real ainuc = .9135; real finuc2 = .8; real finuc18 = -0.36; real mat(time) umol/min; real amat = 7.2067; real fmat4 = .2; real fmat5 = -0.6; real polyam(time) umol/min; real apolyam = .29; real fpolyam5 = .9; real prpps(time) umol/min; real aprpps = .9; real fprpps1 = -0.03; real fprpps4 = -0.45; real fprpps8 = -0.04; real fprpps17 = .65; real fprpps18 = .7; real pyr(time) umol/min; real apyr = 1.2951; real fpyr1 = 1.27; real rnaa(time) umol/min; real arnaa = .06923; real frnan11 = 1; real rnag(time) umol/min; real arnag = .04615; real trans(time) umol/min; real atrans = 8.8539; real ftrans5 = .33; real ua(time) umol/min; real aua = 8.744E-5; real fua16 = 2.21; real x(time) umol/min; real ax = .0012; real fx14 = 2; real xd(time) umol/min; real axd = .949; real fxd14 = .55; // equations when (time=time.min) PRPP = 5.01742; PRPP:time = -1*aprt + -1*den + -1*gprt + -1*hprt + prpps + -1*pyr; when (time=time.min) IMP = 98.2634; IMP:time = ampd + -1*asuc + den + gmpr + hprt + -1*impd + -1*inuc; when (time=time.min) SAMP = .198189; SAMP:time = asuc + -1*asli; when (time=time.min) ATP = 2475.35; ATP:time = -1*ada + -1*adrnr + -1*ampd + aprt + -1*arna + asli + -1*mat + rnaa + trans; when (time=time.min) SAM = 3.99187; SAM:time = mat + -1*polyam + -1*trans; when (time=time.min) Ade = .98473; Ade:time = -1*ade + -1*aprt + polyam; when (time=time.min) XMP = 24.793; XMP:time = -1*gmps + impd; when (time=time.min) GTP = 410.223; GTP:time = -1*gdrnr + -1*gmpr + gmps + -1*gnuc + gprt + -1*grna + rnag; when (time=time.min) dATP = 6.01413; dATP:time = -1*adna + adrnr + -1*dada + dnaa; when (time=time.min) dGTP = 3.02581; dGTP:time = -1*dgnuc + dnag + -1*gdna + gdrnr; when (time=time.min) RNA = 28680.5; RNA:time = arna + grna + -1*rnaa + -1*rnag; when (time=time.min) DNA = 5179.34; DNA:time = adna + -1*dnaa + -1*dnag + gdna; when (time=time.min) HX = 9.51785; HX:time = ada + dada + -1*hprt + -1*hx + -1*hxd + inuc; when (time=time.min) Xa = 5.05941; Xa:time = gua + hxd + -1*x + -1*xd; when (time=time.min) Gua = 5.50638; Gua:time = dgnuc + gnuc + -1*gprt + -1*gua; when (time=time.min) UA = 100.293; UA:time = -1*ua + xd; ada = aada*ATP^fada4; ade = aade*Ade^fade6; adna = aadna*dATP^fdnap9*dGTP^fdnap10; adrnr = aadrnr*ATP^fadrnr4*dATP^fadrnr9*dGTP^fadrnr10; ampd = aampd*ATP^fampd4*GTP^fampd8*Pi^fampd18; aprt = aaprt*PRPP^faprt1*ATP^faprt4*Ade^faprt6; arna = aarna*ATP^frnap4*GTP^frnap8; asuc = aasuc*IMP^fasuc2*ATP^fasuc4*GTP^fasuc8*Pi^fasuc18; asli = aasli*SAMP^fasli3*ATP^fasli4; dada = adada*dATP^fdada9; den = aden*PRPP^fden1*IMP^fden2*ATP^fden4*GTP^fden8*Pi^fden18; dgnuc = adgnuc*dGTP^fdgnuc10; dnaa = adnaa*DNA^fdnan12; dnag = adnag*DNA^fdnan12; gdna = agdna*dATP^fdnap9*dGTP^fdnap10; gdrnr = agdrnr*GTP^fgdrnr8*dATP^fgdrnr9*dGTP^fgdrnr10; gmpr = agmpr*IMP^fgmpr2*ATP^fgmpr4*XMP^fgmpr7*GTP^fgmpr8; gmps = agmps*ATP^fgmps4*XMP^fgmps7; gnuc = agnuc*GTP^fgnuc8*Pi^fgnuc18; gprt = agprt*PRPP^fgprt1*GTP^fgprt8*Gua^fgprt15; grna = agrna*ATP^frnap4*GTP^frnap8; gua = agua*Gua^fgua15; hprt = ahprt*PRPP^fhprt1*IMP^fhprt2*HX^fhprt13; hx = ahx*HX^fhx13; hxd = ahxd*HX^fhxd13; impd = aimpd*IMP^fimpd2*XMP^fimpd7*GTP^fimpd8; inuc = ainuc*IMP^finuc2*Pi^finuc18; mat = amat*ATP^fmat4*SAM^fmat5; polyam = apolyam*SAM^fpolyam5; prpps = aprpps*PRPP^fprpps1*ATP^fprpps4*GTP^fprpps8*R5P^fprpps17*Pi^fprpps18; pyr = apyr*PRPP^fpyr1; rnaa = arnaa*RNA^frnan11; rnag = arnag*RNA^frnan11; trans = atrans*SAM^ftrans5; ua = aua*UA^fua16; x = ax*Xa^fx14; xd = axd*Xa^fxd14; // variable properties cell.sbmlRole="compartment"; PRPP.sbmlRole="species"; PRPP.sbmlCompartment="cell"; IMP.sbmlRole="species"; IMP.sbmlCompartment="cell"; SAMP.sbmlRole="species"; SAMP.sbmlCompartment="cell"; ATP.sbmlRole="species"; ATP.sbmlCompartment="cell"; SAM.sbmlRole="species"; SAM.sbmlCompartment="cell"; Ade.sbmlRole="species"; Ade.sbmlCompartment="cell"; XMP.sbmlRole="species"; XMP.sbmlCompartment="cell"; GTP.sbmlRole="species"; GTP.sbmlCompartment="cell"; dATP.sbmlRole="species"; dATP.sbmlCompartment="cell"; dGTP.sbmlRole="species"; dGTP.sbmlCompartment="cell"; RNA.sbmlRole="species"; RNA.sbmlCompartment="cell"; DNA.sbmlRole="species"; DNA.sbmlCompartment="cell"; HX.sbmlRole="species"; HX.sbmlCompartment="cell"; Xa.sbmlRole="species"; Xa.sbmlCompartment="cell"; Gua.sbmlRole="species"; Gua.sbmlCompartment="cell"; UA.sbmlRole="species"; UA.sbmlCompartment="cell"; R5P.sbmlRole="species"; R5P.sbmlCompartment="cell"; Pi.sbmlRole="species"; Pi.sbmlCompartment="cell"; ada.sbmlRole="rate"; aada.sbmlRole="parameter"; fada4.sbmlRole="parameter"; ade.sbmlRole="rate"; aade.sbmlRole="parameter"; fade6.sbmlRole="parameter"; adna.sbmlRole="rate"; aadna.sbmlRole="parameter"; fdnap9.sbmlRole="parameter"; fdnap10.sbmlRole="parameter"; adrnr.sbmlRole="rate"; aadrnr.sbmlRole="parameter"; fadrnr4.sbmlRole="parameter"; fadrnr9.sbmlRole="parameter"; fadrnr10.sbmlRole="parameter"; ampd.sbmlRole="rate"; aampd.sbmlRole="parameter"; fampd4.sbmlRole="parameter"; fampd8.sbmlRole="parameter"; fampd18.sbmlRole="parameter"; aprt.sbmlRole="rate"; aaprt.sbmlRole="parameter"; faprt1.sbmlRole="parameter"; faprt4.sbmlRole="parameter"; faprt6.sbmlRole="parameter"; arna.sbmlRole="rate"; aarna.sbmlRole="parameter"; frnap4.sbmlRole="parameter"; frnap8.sbmlRole="parameter"; asuc.sbmlRole="rate"; aasuc.sbmlRole="parameter"; fasuc2.sbmlRole="parameter"; fasuc4.sbmlRole="parameter"; fasuc8.sbmlRole="parameter"; fasuc18.sbmlRole="parameter"; asli.sbmlRole="rate"; aasli.sbmlRole="parameter"; fasli3.sbmlRole="parameter"; fasli4.sbmlRole="parameter"; dada.sbmlRole="rate"; adada.sbmlRole="parameter"; fdada9.sbmlRole="parameter"; den.sbmlRole="rate"; aden.sbmlRole="parameter"; fden1.sbmlRole="parameter"; fden2.sbmlRole="parameter"; fden4.sbmlRole="parameter"; fden8.sbmlRole="parameter"; fden18.sbmlRole="parameter"; dgnuc.sbmlRole="rate"; adgnuc.sbmlRole="parameter"; fdgnuc10.sbmlRole="parameter"; dnaa.sbmlRole="rate"; adnaa.sbmlRole="parameter"; fdnan12.sbmlRole="parameter"; dnag.sbmlRole="rate"; adnag.sbmlRole="parameter"; gdna.sbmlRole="rate"; agdna.sbmlRole="parameter"; gdrnr.sbmlRole="rate"; agdrnr.sbmlRole="parameter"; fgdrnr8.sbmlRole="parameter"; fgdrnr9.sbmlRole="parameter"; fgdrnr10.sbmlRole="parameter"; gmpr.sbmlRole="rate"; agmpr.sbmlRole="parameter"; fgmpr2.sbmlRole="parameter"; fgmpr4.sbmlRole="parameter"; fgmpr7.sbmlRole="parameter"; fgmpr8.sbmlRole="parameter"; gmps.sbmlRole="rate"; agmps.sbmlRole="parameter"; fgmps4.sbmlRole="parameter"; fgmps7.sbmlRole="parameter"; gnuc.sbmlRole="rate"; agnuc.sbmlRole="parameter"; fgnuc8.sbmlRole="parameter"; fgnuc18.sbmlRole="parameter"; gprt.sbmlRole="rate"; agprt.sbmlRole="parameter"; fgprt1.sbmlRole="parameter"; fgprt8.sbmlRole="parameter"; fgprt15.sbmlRole="parameter"; grna.sbmlRole="rate"; agrna.sbmlRole="parameter"; gua.sbmlRole="rate"; agua.sbmlRole="parameter"; fgua15.sbmlRole="parameter"; hprt.sbmlRole="rate"; ahprt.sbmlRole="parameter"; fhprt1.sbmlRole="parameter"; fhprt2.sbmlRole="parameter"; fhprt13.sbmlRole="parameter"; hx.sbmlRole="rate"; ahx.sbmlRole="parameter"; fhx13.sbmlRole="parameter"; hxd.sbmlRole="rate"; ahxd.sbmlRole="parameter"; fhxd13.sbmlRole="parameter"; impd.sbmlRole="rate"; aimpd.sbmlRole="parameter"; fimpd2.sbmlRole="parameter"; fimpd7.sbmlRole="parameter"; fimpd8.sbmlRole="parameter"; inuc.sbmlRole="rate"; ainuc.sbmlRole="parameter"; finuc2.sbmlRole="parameter"; finuc18.sbmlRole="parameter"; mat.sbmlRole="rate"; amat.sbmlRole="parameter"; fmat4.sbmlRole="parameter"; fmat5.sbmlRole="parameter"; polyam.sbmlRole="rate"; apolyam.sbmlRole="parameter"; fpolyam5.sbmlRole="parameter"; prpps.sbmlRole="rate"; aprpps.sbmlRole="parameter"; fprpps1.sbmlRole="parameter"; fprpps4.sbmlRole="parameter"; fprpps8.sbmlRole="parameter"; fprpps17.sbmlRole="parameter"; fprpps18.sbmlRole="parameter"; pyr.sbmlRole="rate"; apyr.sbmlRole="parameter"; fpyr1.sbmlRole="parameter"; rnaa.sbmlRole="rate"; arnaa.sbmlRole="parameter"; frnan11.sbmlRole="parameter"; rnag.sbmlRole="rate"; arnag.sbmlRole="parameter"; trans.sbmlRole="rate"; atrans.sbmlRole="parameter"; ftrans5.sbmlRole="parameter"; ua.sbmlRole="rate"; aua.sbmlRole="parameter"; fua16.sbmlRole="parameter"; x.sbmlRole="rate"; ax.sbmlRole="parameter"; fx14.sbmlRole="parameter"; xd.sbmlRole="rate"; axd.sbmlRole="parameter"; fxd14.sbmlRole="parameter"; }