// This model generated automatically from SBML // unit definitions import nsrunit; unit conversion off; unit item=scalar; unit substance = mole; unit volume = litre; unit area = metre^2; unit length = metre; unit time = second; // SBML property definitions property sbmlRole=string; property sbmlName=string; property sbmlCompartment=string; // SBML reactions // vPTS: 65cpep cglcex => 65cg6p 65cpyr // vPGI: cg6p => cf6p // vPGM: cg6p => cg1p // vG6PDH: cg6p => cpg // vPFK: cf6p => cfdp // vTA: csed7p cgap => cf6p ce4p // vTKA: cxyl5p crib5p => cgap csed7p // vTKB: cxyl5p ce4p => cf6p cgap // vMURSyNTH: 2cf6p => X // vALDO: cfdp => cgap cdhap // vGAPDH: cgap => cpgp // vTIS: cdhap => cgap // vTRPSYNTH: X => cgap cpyr // vG3PDH: cdhap => X // vPGK: cpgp => cpg3 // vsersynth: cpg3 // vrpGluMu: cpg3 => cpg2 // vENO: cpg2 => cpep // vPK: cpep => cpyr // vpepCxylase: cpep // vSynth1: cpep // vSynth2: cpyr // vDAHPS: ce4p cpep // vPDH: cpyr // vMethSynth: => cpyr // vPGDH: cpg // vR5PI: cribu5p => crib5p // vRu5P: cribu5p => cxyl5p // vPPK: crib5p => X // vG1PAT: cg1p => X // vG6P: cg6p => X // vf6P: cf6p => X // vfdP: cfdp => X // vGAP: cgap => X // vDHAP: cdhap => X // vPGP: cpgp => X // vPG3: cpg3 => X // vpg2: cpg2 => X // vPEP: cpep => X // vRibu5p: cribu5p => X // vRIB5P: crib5p => X // vXYL5P: cxyl5p => X // vSED7P: csed7p => X // vpyr: cpyr => X // vPG: cpg => X // vE4P: ce4p => X // vGLP: cg1p => X // vEXTER: X => cglcex math main { realDomain time second; time.min=0; extern time.max; extern time.delta; // variable definitions real compartment = 1 volume; real rmaxPTS = 7829.78; real rmaxTKa = 9.4733848; real rmaxENO = 330.4476151; real rmaxSynth1 = .01953897; real rmaxPGluMu = 89.04965407; real rmaxPK = .0611315; real rmaxPDH = 6.059531; real rmaxG1PAT = .00752546; real rmaxSerSynth = .02571211; real rmaxDAHPS = .10795312; real rmaxPGK = 3021.773771; real rmaxRu5P = 6.7390295; real rmaxR5PI = 4.8384119; real rmaxPGM = .83982428; real rmaxRPPK = .01290045; real rmaxG6PDH = 1.380197; real rmaxALDO = 17.41464425; real rmaxTIS = 68.67474392; real rmaxG3PDH = .01162043; real rmaxPFK = 1840.584747; real rmaxPGI = 650.9878687; real rmaxPGDH = 1.623236E1; real rmaxGAPDH = 921.5942861; real rmaxSynth2 = .07361855; real rmaxTKb = 86.55855855; real rmaxTA = 10.87164108; real rmaxpepCxylase = .10702059; real rmaxMurSynth = 4.3711E-4; real rmaxTrpSynth = .001037; real rmaxMetSynth = .0022627; real Dil = 2.78E-5; real mu = 2.78E-5; real cfeed = 110.96; real KTKbeq = 10; real KPGIg6p = 2.9; real KPGIeq = .1725; real KPGIf6p = .266; real KPGIg6ppginh = .2; real KPGIf6ppginh = .2; real KSynth1pep = 1; real KGAPDHeq = .63; real KGAPDHgap = .683; real KGAPDHnad = .252; real KGAPDHpgp = 1.04E-5; real KGAPDHnadh = 1.09; real KRu5Peq = 1.4; real KG1PATg1p = 3.2; real KG1PATfdp = .119; real KG1PATatp = 4.42; real nG1PATfdp = 1.2; real KR5PIeq = 4; real KPGKeq = 1934.4; real KPGKadp = .185; real KPGKpgp = .0468; real KPGKatp = .653; real KPGKpg3 = .473; real KENOeq = 6.73; real KENOpg2 = .1; real KENOpep = .135; real nPK = 4; real LPK = 1E3; real KTAeq = 1.05; real KG6PDHnadp = .0246; real KG6PDHnadphnadpinh = .01; real KG6PDHnadphg6pinh = 6.43; real KG6PDHg6p = 14.4; real KPTSa1 = 3082.3; real KPTSa2 = .01; real KPTSa3 = 245.3; real KPTSg6p = 2.15; real nPTSg6p = 3.66; real KPKpep = .31; real KPKatp = 22.5; real KPKadp = .26; real KPKamp = .2; real KPKfdp = .19; real KSerSynthpg3 = 1; real KPDHpyr = 1159; real nPDH = 3.68; real KPGluMueq = .188; real KPGluMupg3 = .2; real KPGluMupg2 = .369; real kTISeq = 1.39; real kTISdhap = 2.8; real kTISgap = .3; real KPGDHpg = 37.5; real KPGDHnadp = .0506; real KPGDHatpinh = 208; real KPGDHnadphinh = .0138; real KPGMeq = .196; real KPGMg6p = 1.038; real KPGMg1p = .0136; real KRPPKrib5p = .1; real KpepCxylasepep = 4.07; real KpepCxylasefdp = .7; real npepCxylasefdp = 4.21; real KG3PDHdhap = 1; real KPFKf6ps = .325; real KPFKatps = .123; real KPFKpep = 3.26; real KPFKadpa = 128; real KPFKadpc = 4.14; real KPFKadpb = 3.89; real KPFKampa = 19.1; real KPFKampb = 3.2; real nPFK = 11.1; real KTKaeq = 1.2; real KDAHPSe4p = .035; real KDAHPSpep = .0053; real nDAHPSe4p = 2.6; real nDAHPSpep = 2.2; real LPFK = 5629067; real kALDOgap = .088; real kALDOgapinh = .6; real kALDOdhap = .088; real VALDOblf = 2; real KSynth2pyr = 1; real kALDOeq = .144; real kALDOfdp = 1.75; real cnad = 1.47; real cnadh = .1; real catp = 4.27; real cadp = .595; real camp = .955; real cnadp = .195; real cnadph = .062; private real cpep.amt(time) substance; real cpep(time) substance/volume; real cpep.init substance/volume; private real cglcex.amt(time) substance; real cglcex(time) substance/volume; real cglcex.init substance/volume; private real cg6p.amt(time) substance; real cg6p(time) substance/volume; real cg6p.init substance/volume; private real cpyr.amt(time) substance; real cpyr(time) substance/volume; real cpyr.init substance/volume; private real cf6p.amt(time) substance; real cf6p(time) substance/volume; real cf6p.init substance/volume; private real cpg.amt(time) substance; real cpg(time) substance/volume; real cpg.init substance/volume; private real cg1p.amt(time) substance; real cg1p(time) substance/volume; real cg1p.init substance/volume; private real cfdp.amt(time) substance; real cfdp(time) substance/volume; real cfdp.init substance/volume; private real csed7p.amt(time) substance; real csed7p(time) substance/volume; real csed7p.init substance/volume; private real cgap.amt(time) substance; real cgap(time) substance/volume; real cgap.init substance/volume; private real ce4p.amt(time) substance; real ce4p(time) substance/volume; real ce4p.init substance/volume; private real cxyl5p.amt(time) substance; real cxyl5p(time) substance/volume; real cxyl5p.init substance/volume; private real crib5p.amt(time) substance; real crib5p(time) substance/volume; real crib5p.init substance/volume; private real X.amt substance; real X substance/volume; real X.init substance/volume; private real cdhap.amt(time) substance; real cdhap(time) substance/volume; real cdhap.init substance/volume; private real cpgp.amt(time) substance; real cpgp(time) substance/volume; real cpgp.init substance/volume; private real cpg3.amt(time) substance; real cpg3(time) substance/volume; real cpg3.init substance/volume; private real cpg2.amt(time) substance; real cpg2(time) substance/volume; real cpg2.init substance/volume; private real cribu5p.amt(time) substance; real cribu5p(time) substance/volume; real cribu5p.init substance/volume; real vPTS.rate(time) substance/time; real vPGI.rate(time) substance/time; real vPGM.rate(time) substance/time; real vG6PDH.rate(time) substance/time; real vPFK.rate(time) substance/time; real vTA.rate(time) substance/time; real vTKA.rate(time) substance/time; real vTKB.rate(time) substance/time; real vMURSyNTH.rate(time) substance/time; real vALDO.rate(time) substance/time; real vGAPDH.rate(time) substance/time; real vTIS.rate(time) substance/time; real vTRPSYNTH.rate(time) substance/time; real vG3PDH.rate(time) substance/time; real vPGK.rate(time) substance/time; real vsersynth.rate(time) substance/time; real vrpGluMu.rate(time) substance/time; real vENO.rate(time) substance/time; real vPK.rate(time) substance/time; real vpepCxylase.rate(time) substance/time; real vSynth1.rate(time) substance/time; real vSynth2.rate(time) substance/time; real vDAHPS.rate(time) substance/time; real vPDH.rate(time) substance/time; real vMethSynth.rate(time) substance/time; real vPGDH.rate(time) substance/time; real vR5PI.rate(time) substance/time; real vRu5P.rate(time) substance/time; real vPPK.rate(time) substance/time; real vG1PAT.rate(time) substance/time; real vG6P.rate(time) substance/time; real vf6P.rate(time) substance/time; real vfdP.rate(time) substance/time; real vGAP.rate(time) substance/time; real vDHAP.rate(time) substance/time; real vPGP.rate(time) substance/time; real vPG3.rate(time) substance/time; real vpg2.rate(time) substance/time; real vPEP.rate(time) substance/time; real vRibu5p.rate(time) substance/time; real vRIB5P.rate(time) substance/time; real vXYL5P.rate(time) substance/time; real vSED7P.rate(time) substance/time; real vpyr.rate(time) substance/time; real vPG.rate(time) substance/time; real vE4P.rate(time) substance/time; real vGLP.rate(time) substance/time; real vEXTER.rate(time) substance/time; // equations when (time=time.min) cpep.amt = cpep.init*compartment; cpep.amt:time = -65*vPTS.rate + vENO.rate + -1*vPK.rate + -1*vpepCxylase.rate + -1*vSynth1.rate + -1*vDAHPS.rate + -1*vPEP.rate; cpep = cpep.amt/compartment; cpep.init = 2.67; when (time=time.min) cglcex.amt = cglcex.init*compartment; cglcex.amt:time = -1*vPTS.rate + vEXTER.rate; cglcex = cglcex.amt/compartment; cglcex.init = .0556; when (time=time.min) cg6p.amt = cg6p.init*compartment; cg6p.amt:time = 65*vPTS.rate + -1*vPGI.rate + -1*vPGM.rate + -1*vG6PDH.rate + -1*vG6P.rate; cg6p = cg6p.amt/compartment; cg6p.init = 3.48; when (time=time.min) cpyr.amt = cpyr.init*compartment; cpyr.amt:time = 65*vPTS.rate + vTRPSYNTH.rate + vPK.rate + -1*vSynth2.rate + -1*vPDH.rate + vMethSynth.rate + -1*vpyr.rate; cpyr = cpyr.amt/compartment; cpyr.init = 2.67; when (time=time.min) cf6p.amt = cf6p.init*compartment; cf6p.amt:time = vPGI.rate + -1*vPFK.rate + vTA.rate + vTKB.rate + -2*vMURSyNTH.rate + -1*vf6P.rate; cf6p = cf6p.amt/compartment; cf6p.init = .6; when (time=time.min) cpg.amt = cpg.init*compartment; cpg.amt:time = vG6PDH.rate + -1*vPGDH.rate + -1*vPG.rate; cpg = cpg.amt/compartment; cpg.init = .8075; when (time=time.min) cg1p.amt = cg1p.init*compartment; cg1p.amt:time = vPGM.rate + -1*vG1PAT.rate + -1*vGLP.rate; cg1p = cg1p.amt/compartment; cg1p.init = .6525; when (time=time.min) cfdp.amt = cfdp.init*compartment; cfdp.amt:time = vPFK.rate + -1*vALDO.rate + -1*vfdP.rate; cfdp = cfdp.amt/compartment; cfdp.init = .272; when (time=time.min) csed7p.amt = csed7p.init*compartment; csed7p.amt:time = -1*vTA.rate + vTKA.rate + -1*vSED7P.rate; csed7p = csed7p.amt/compartment; csed7p.init = .276; when (time=time.min) cgap.amt = cgap.init*compartment; cgap.amt:time = -1*vTA.rate + vTKA.rate + vTKB.rate + vALDO.rate + -1*vGAPDH.rate + vTIS.rate + vTRPSYNTH.rate + -1*vGAP.rate; cgap = cgap.amt/compartment; cgap.init = .218; when (time=time.min) ce4p.amt = ce4p.init*compartment; ce4p.amt:time = vTA.rate + -1*vTKB.rate + -1*vDAHPS.rate + -1*vE4P.rate; ce4p = ce4p.amt/compartment; ce4p.init = .098; when (time=time.min) cxyl5p.amt = cxyl5p.init*compartment; cxyl5p.amt:time = -1*vTKA.rate + -1*vTKB.rate + vRu5P.rate + -1*vXYL5P.rate; cxyl5p = cxyl5p.amt/compartment; cxyl5p.init = .138; when (time=time.min) crib5p.amt = crib5p.init*compartment; crib5p.amt:time = -1*vTKA.rate + vR5PI.rate + -1*vPPK.rate + -1*vRIB5P.rate; crib5p = crib5p.amt/compartment; crib5p.init = .398; X.amt = X*compartment; X = X.init; X.init = 1; when (time=time.min) cdhap.amt = cdhap.init*compartment; cdhap.amt:time = vALDO.rate + -1*vTIS.rate + -1*vG3PDH.rate + -1*vDHAP.rate; cdhap = cdhap.amt/compartment; cdhap.init = .167; when (time=time.min) cpgp.amt = cpgp.init*compartment; cpgp.amt:time = vGAPDH.rate + -1*vPGK.rate + -1*vPGP.rate; cpgp = cpgp.amt/compartment; cpgp.init = .008; when (time=time.min) cpg3.amt = cpg3.init*compartment; cpg3.amt:time = vPGK.rate + -1*vsersynth.rate + -1*vrpGluMu.rate + -1*vPG3.rate; cpg3 = cpg3.amt/compartment; cpg3.init = 2.131; when (time=time.min) cpg2.amt = cpg2.init*compartment; cpg2.amt:time = vrpGluMu.rate + -1*vENO.rate + -1*vpg2.rate; cpg2 = cpg2.amt/compartment; cpg2.init = .399; when (time=time.min) cribu5p.amt = cribu5p.init*compartment; cribu5p.amt:time = -1*vR5PI.rate + -1*vRu5P.rate + -1*vRibu5p.rate; cribu5p = cribu5p.amt/compartment; cribu5p.init = .111; vPTS.rate = rmaxPTS*cglcex*cpep/cpyr/(KPTSa1+KPTSa2*cpep/cpyr+KPTSa3*cglcex+cglcex*cpep/cpyr)/(1+cg6p^nPTSg6p/KPTSg6p); vPGI.rate = rmaxPGI*(cg6p-cf6p/KPGIeq)/(KPGIg6p*(1+cf6p/KPGIf6p/(1+cpg/KPGIf6ppginh)+cpg/KPGIg6ppginh)+cg6p); vPGM.rate = rmaxPGM*(cg6p-cg1p/KPGMeq)/(KPGMg6p*(1+cg1p/KPGMg1p)+cg6p); vG6PDH.rate = rmaxG6PDH*cg6p*cnadp/(cg6p+KG6PDHg6p)/(1+cnadph/KG6PDHnadphg6pinh)/(KG6PDHnadp*(1+cnadph/KG6PDHnadphnadpinh)+cnadp); vPFK.rate = rmaxPFK*catp/(catp+KPFKatps*(1+cadp/KPFKadpc))*cf6p/(cf6p+KPFKf6ps*(1+cpep/KPFKpep+cadp/KPFKadpb+camp/KPFKampb)/(1+cadp/KPFKadpa+camp/KPFKampa))/(1+LPFK/(1+cf6p/KPFKf6ps/(1+cpep/KPFKpep+cadp/KPFKadpb+camp/KPFKampb)*(1+cadp/KPFKadpa+camp/KPFKampa))^nPFK); vTA.rate = rmaxTA*(cgap*csed7p-ce4p*cf6p/KTAeq); vTKA.rate = rmaxTKa*(crib5p*cxyl5p-csed7p*cgap/KTKaeq); vTKB.rate = rmaxTKb*(cxyl5p*ce4p-cf6p*cgap/KTKbeq); vMURSyNTH.rate = rmaxMurSynth; vALDO.rate = rmaxALDO*(cfdp-cgap*cdhap/kALDOeq)/(kALDOfdp+cfdp+kALDOgap/kALDOeq/VALDOblf*cdhap+kALDOdhap/kALDOeq/VALDOblf*cgap+cfdp*cgap/kALDOgapinh+cgap*cdhap/VALDOblf/kALDOeq); vGAPDH.rate = rmaxGAPDH*(cgap*cnad-cpgp*cnadh/KGAPDHeq)/(KGAPDHgap*(1+cpgp/KGAPDHpgp)+cgap)/(KGAPDHnad*(1+cnadh/KGAPDHnadh)+cnad); vTIS.rate = rmaxTIS*(cdhap-cgap/kTISeq)/(kTISdhap*(1+cgap/kTISgap)+cdhap); vTRPSYNTH.rate = rmaxTrpSynth; vG3PDH.rate = rmaxG3PDH*cdhap/(KG3PDHdhap+cdhap); vPGK.rate = rmaxPGK*(cadp*cpgp-catp*cpg3/KPGKeq)/(KPGKadp*(1+catp/KPGKatp)+cadp)/(KPGKpgp*(1+cpg3/KPGKpg3)+cpgp); vsersynth.rate = rmaxSerSynth*cpg3/(KSerSynthpg3+cpg3); vrpGluMu.rate = rmaxPGluMu*(cpg3-cpg2/KPGluMueq)/(KPGluMupg3*(1+cpg2/KPGluMupg2)+cpg3); vENO.rate = rmaxENO*(cpg2-cpep/KENOeq)/(KENOpg2*(1+cpep/KENOpep)+cpg2); vPK.rate = rmaxPK*cpep/KPKpep*(cpep/KPKpep+1)^(nPK-1)/(LPK*((1+catp/KPKatp)/(cfdp/KPKfdp+camp/KPKamp+1))^nPK+(cpep/KPKpep+1)^nPK)*cadp/(cadp+KPKadp); vpepCxylase.rate = rmaxpepCxylase*cpep*(1+(cfdp/KpepCxylasefdp)^npepCxylasefdp)/(KpepCxylasepep+cpep); vSynth1.rate = rmaxSynth1*cpep/(KSynth1pep+cpep); vSynth2.rate = rmaxSynth2*cpyr/(KSynth2pyr+cpyr); vDAHPS.rate = rmaxDAHPS*ce4p^nDAHPSe4p*cpep^nDAHPSpep/(KDAHPSe4p+ce4p^nDAHPSe4p)/(KDAHPSpep+cpep^nDAHPSpep); vPDH.rate = rmaxPDH*cpyr^nPDH/(KPDHpyr+cpyr^nPDH); vMethSynth.rate = rmaxMetSynth; vPGDH.rate = rmaxPGDH*cpg*cnadp/(cpg+KPGDHpg)/(cnadp+KPGDHnadp*(1+cnadph/KPGDHnadphinh)*(1+catp/KPGDHatpinh)); vR5PI.rate = rmaxR5PI*(cribu5p-crib5p/KR5PIeq); vRu5P.rate = rmaxRu5P*(cribu5p-cxyl5p/KRu5Peq); vPPK.rate = rmaxRPPK*crib5p/(KRPPKrib5p+crib5p); vG1PAT.rate = rmaxG1PAT*cg1p*catp*(1+(cfdp/KG1PATfdp)^nG1PATfdp)/(KG1PATatp+catp)/(KG1PATg1p+cg1p); vG6P.rate = mu*cg6p; vf6P.rate = mu*cf6p; vfdP.rate = mu*cfdp; vGAP.rate = mu*cgap; vDHAP.rate = mu*cdhap; vPGP.rate = mu*cpgp; vPG3.rate = mu*cpg3; vpg2.rate = mu*cpg2; vPEP.rate = mu*cpep; vRibu5p.rate = mu*cribu5p; vRIB5P.rate = mu*crib5p; vXYL5P.rate = mu*cxyl5p; vSED7P.rate = mu*csed7p; vpyr.rate = mu*cpyr; vPG.rate = mu*cpg; vE4P.rate = mu*ce4p; vGLP.rate = mu*cg1p; vEXTER.rate = Dil*(cfeed-cglcex); // variable properties compartment.sbmlRole="compartment"; rmaxPTS.sbmlRole="parameter"; rmaxTKa.sbmlRole="parameter"; rmaxENO.sbmlRole="parameter"; rmaxSynth1.sbmlRole="parameter"; rmaxPGluMu.sbmlRole="parameter"; rmaxPK.sbmlRole="parameter"; rmaxPDH.sbmlRole="parameter"; rmaxG1PAT.sbmlRole="parameter"; rmaxSerSynth.sbmlRole="parameter"; rmaxDAHPS.sbmlRole="parameter"; rmaxPGK.sbmlRole="parameter"; rmaxRu5P.sbmlRole="parameter"; rmaxR5PI.sbmlRole="parameter"; rmaxPGM.sbmlRole="parameter"; rmaxRPPK.sbmlRole="parameter"; rmaxG6PDH.sbmlRole="parameter"; rmaxALDO.sbmlRole="parameter"; rmaxTIS.sbmlRole="parameter"; rmaxG3PDH.sbmlRole="parameter"; rmaxPFK.sbmlRole="parameter"; rmaxPGI.sbmlRole="parameter"; rmaxPGDH.sbmlRole="parameter"; rmaxGAPDH.sbmlRole="parameter"; rmaxSynth2.sbmlRole="parameter"; rmaxTKb.sbmlRole="parameter"; rmaxTA.sbmlRole="parameter"; rmaxpepCxylase.sbmlRole="parameter"; rmaxMurSynth.sbmlRole="parameter"; rmaxTrpSynth.sbmlRole="parameter"; rmaxMetSynth.sbmlRole="parameter"; Dil.sbmlRole="parameter"; mu.sbmlRole="parameter"; cfeed.sbmlRole="parameter"; KTKbeq.sbmlRole="parameter"; KPGIg6p.sbmlRole="parameter"; KPGIeq.sbmlRole="parameter"; KPGIf6p.sbmlRole="parameter"; KPGIg6ppginh.sbmlRole="parameter"; KPGIf6ppginh.sbmlRole="parameter"; KSynth1pep.sbmlRole="parameter"; KGAPDHeq.sbmlRole="parameter"; KGAPDHgap.sbmlRole="parameter"; KGAPDHnad.sbmlRole="parameter"; KGAPDHpgp.sbmlRole="parameter"; KGAPDHnadh.sbmlRole="parameter"; KRu5Peq.sbmlRole="parameter"; KG1PATg1p.sbmlRole="parameter"; KG1PATfdp.sbmlRole="parameter"; KG1PATatp.sbmlRole="parameter"; nG1PATfdp.sbmlRole="parameter"; KR5PIeq.sbmlRole="parameter"; KPGKeq.sbmlRole="parameter"; KPGKadp.sbmlRole="parameter"; KPGKpgp.sbmlRole="parameter"; KPGKatp.sbmlRole="parameter"; KPGKpg3.sbmlRole="parameter"; KENOeq.sbmlRole="parameter"; KENOpg2.sbmlRole="parameter"; KENOpep.sbmlRole="parameter"; nPK.sbmlRole="parameter"; LPK.sbmlRole="parameter"; KTAeq.sbmlRole="parameter"; KG6PDHnadp.sbmlRole="parameter"; KG6PDHnadphnadpinh.sbmlRole="parameter"; KG6PDHnadphg6pinh.sbmlRole="parameter"; KG6PDHg6p.sbmlRole="parameter"; KPTSa1.sbmlRole="parameter"; KPTSa2.sbmlRole="parameter"; KPTSa3.sbmlRole="parameter"; KPTSg6p.sbmlRole="parameter"; nPTSg6p.sbmlRole="parameter"; KPKpep.sbmlRole="parameter"; KPKatp.sbmlRole="parameter"; KPKadp.sbmlRole="parameter"; KPKamp.sbmlRole="parameter"; KPKfdp.sbmlRole="parameter"; KSerSynthpg3.sbmlRole="parameter"; KPDHpyr.sbmlRole="parameter"; nPDH.sbmlRole="parameter"; KPGluMueq.sbmlRole="parameter"; KPGluMupg3.sbmlRole="parameter"; KPGluMupg2.sbmlRole="parameter"; kTISeq.sbmlRole="parameter"; kTISdhap.sbmlRole="parameter"; kTISgap.sbmlRole="parameter"; KPGDHpg.sbmlRole="parameter"; KPGDHnadp.sbmlRole="parameter"; KPGDHatpinh.sbmlRole="parameter"; KPGDHnadphinh.sbmlRole="parameter"; KPGMeq.sbmlRole="parameter"; KPGMg6p.sbmlRole="parameter"; KPGMg1p.sbmlRole="parameter"; KRPPKrib5p.sbmlRole="parameter"; KpepCxylasepep.sbmlRole="parameter"; KpepCxylasefdp.sbmlRole="parameter"; npepCxylasefdp.sbmlRole="parameter"; KG3PDHdhap.sbmlRole="parameter"; KPFKf6ps.sbmlRole="parameter"; KPFKatps.sbmlRole="parameter"; KPFKpep.sbmlRole="parameter"; KPFKadpa.sbmlRole="parameter"; 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cdhap.sbmlRole="speciesConcentration"; cdhap.sbmlCompartment="compartment"; cdhap.init.sbmlRole="speciesInitialConcentration"; cpgp.amt.sbmlRole="speciesAmount"; cpgp.sbmlRole="speciesConcentration"; cpgp.sbmlCompartment="compartment"; cpgp.init.sbmlRole="speciesInitialConcentration"; cpg3.amt.sbmlRole="speciesAmount"; cpg3.sbmlRole="speciesConcentration"; cpg3.sbmlCompartment="compartment"; cpg3.init.sbmlRole="speciesInitialConcentration"; cpg2.amt.sbmlRole="speciesAmount"; cpg2.sbmlRole="speciesConcentration"; cpg2.sbmlCompartment="compartment"; cpg2.init.sbmlRole="speciesInitialConcentration"; cribu5p.amt.sbmlRole="speciesAmount"; cribu5p.sbmlRole="speciesConcentration"; cribu5p.sbmlCompartment="compartment"; cribu5p.init.sbmlRole="speciesInitialConcentration"; vPTS.rate.sbmlRole="rate"; vPGI.rate.sbmlRole="rate"; vPGM.rate.sbmlRole="rate"; vG6PDH.rate.sbmlRole="rate"; vPFK.rate.sbmlRole="rate"; vTA.rate.sbmlRole="rate"; vTKA.rate.sbmlRole="rate"; vTKB.rate.sbmlRole="rate"; vMURSyNTH.rate.sbmlRole="rate"; vALDO.rate.sbmlRole="rate"; vGAPDH.rate.sbmlRole="rate"; vTIS.rate.sbmlRole="rate"; vTRPSYNTH.rate.sbmlRole="rate"; vG3PDH.rate.sbmlRole="rate"; vPGK.rate.sbmlRole="rate"; vsersynth.rate.sbmlRole="rate"; vrpGluMu.rate.sbmlRole="rate"; vENO.rate.sbmlRole="rate"; vPK.rate.sbmlRole="rate"; vpepCxylase.rate.sbmlRole="rate"; vSynth1.rate.sbmlRole="rate"; vSynth2.rate.sbmlRole="rate"; vDAHPS.rate.sbmlRole="rate"; vPDH.rate.sbmlRole="rate"; vMethSynth.rate.sbmlRole="rate"; vPGDH.rate.sbmlRole="rate"; vR5PI.rate.sbmlRole="rate"; vRu5P.rate.sbmlRole="rate"; vPPK.rate.sbmlRole="rate"; vG1PAT.rate.sbmlRole="rate"; vG6P.rate.sbmlRole="rate"; vf6P.rate.sbmlRole="rate"; vfdP.rate.sbmlRole="rate"; vGAP.rate.sbmlRole="rate"; vDHAP.rate.sbmlRole="rate"; vPGP.rate.sbmlRole="rate"; vPG3.rate.sbmlRole="rate"; vpg2.rate.sbmlRole="rate"; vPEP.rate.sbmlRole="rate"; vRibu5p.rate.sbmlRole="rate"; vRIB5P.rate.sbmlRole="rate"; vXYL5P.rate.sbmlRole="rate"; vSED7P.rate.sbmlRole="rate"; vpyr.rate.sbmlRole="rate"; vPG.rate.sbmlRole="rate"; vE4P.rate.sbmlRole="rate"; vGLP.rate.sbmlRole="rate"; vEXTER.rate.sbmlRole="rate"; }