// This model generated automatically from SBML
// WARNING: Renamed variable source to source_ due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// v1: NFkB IKKIkBa => IKKIkBaNFkB 
// v2: IKKIkBaNFkB => NFkB IKK 
// v3: IKKIkBaNFkB => NFkB IKKIkBa 
// v4: IKK IkBa => IKKIkBa 
// v5: IKKIkBa => IKK 
// v6: IKKIkBa => IKK IkBa 
// v7: IKKIkBb NFkB => IKKIkBbNFkB 
// v8: IKKIkBbNFkB => IKK NFkB 
// v9: IKKIkBbNFkB => IKKIkBb NFkB 
// v10: IkBb IKK => IKKIkBb 
// v11: IKKIkBb => IKK 
// v12: IKKIkBb => IKK IkBb 
// v13: NFkB IKKIkBe => IKKIkBeNFkB 
// v14: IKKIkBeNFkB => NFkB IKK 
// v15: IKKIkBeNFkB => NFkB IKKIkBe 
// v16: IkBe IKK => IKKIkBe 
// v17: IKKIkBe => IKK 
// v18: IKKIkBe => IkBe IKK 
// v19: IkBaNFkB IKK => IKKIkBaNFkB 
// v20: IKKIkBaNFkB => IkBaNFkB IKK 
// v21: IkBbNFkB IKK => IKKIkBbNFkB 
// v22: IKKIkBbNFkB => IkBbNFkB IKK 
// v23: IKK IkBeNFkB => IKKIkBeNFkB 
// v24: IKKIkBeNFkB => IKK IkBeNFkB 
// v25: IkBa NFkB => IkBaNFkB 
// v26: 2source => IkBat 2sink 
// v27: IkBaNFkB => IkBa NFkB 
// v28: NFkBn IkBan => IkBanNFkBn 
// v29: IkBanNFkBn => NFkBn IkBan 
// v30: IkBanNFkBn => IkBaNFkB 
// v31: IkBaNFkB => NFkB 
// v32: IkBat => sink 
// v33: IkBan => IkBa 
// v34: IkBa => IkBan 
// v35: source => IkBa sink 
// v36: IkBb NFkB => IkBbNFkB 
// v37: IkBbNFkB => IkBb NFkB 
// v38: IkBbn NFkBn => IkBbnNFkBn 
// v39: IkBbnNFkBn => IkBbn NFkBn 
// v40: IkBbnNFkBn => IkBbNFkB 
// v41: IkBbNFkB => NFkB 
// v42: IkBbt => sink 
// v43: IkBbn => IkBb 
// v44: IkBb => IkBbn 
// v45: source => IkBb sink 
// v46: NFkB IkBe => IkBeNFkB 
// v47: IkBeNFkB => NFkB IkBe 
// v48: NFkBn IkBen => IkBenNFkBn 
// v49: IkBenNFkBn => IkBen NFkBn 
// v50: IkBenNFkBn => IkBeNFkB 
// v51: IkBeNFkB => NFkB 
// v52: IkBet => sink 
// v53: IkBen => IkBe 
// v54: IkBe => IkBen 
// v55: source => IkBe sink 
// v56: NFkBn => NFkB 
// v57: NFkB => NFkBn 
// v58: source => IkBat 
// v59: source => IkBbt 
// v60: source => IkBet 
// v61: IkBa => sink 
// v62: IkBb => sink 
// v63: IkBe => sink 
// v64: IKK => sink 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real compartment = 1 L;
  real k1 = 30;
  real k2 = .03;
  real k3 = 30;
  real k4 = .03;
  real k5 = 30;
  real k6 = .03;
  real k7 = 30;
  real k8 = .03;
  real k9 = 1.221;
  real k10 = 30;
  real k11 = .03;
  real k12 = .45;
  real k13 = 30;
  real k14 = .03;
  real k15 = .66;
  real k16 = .00135;
  real k17 = .00135;
  real k18 = .00135;
  real k19 = 5.4;
  real k20 = .0048;
  real k21 = 30;
  real k22 = .03;
  real k23 = 30;
  real k24 = .03;
  real k25 = 30;
  real k26 = .03;
  real k27 = 9.2137E-5;
  real k28 = 1.0271;
  real k29 = .0168;
  real k30 = 1.0701E-5;
  real k31 = .0168;
  real k32 = 7.644E-6;
  real k33 = .0168;
  real k34 = 1.35;
  real k35 = .075;
  real k36 = .2448;
  real k37 = .00675;
  real k38 = .018;
  real k39 = .012;
  real k40 = .36;
  real k41 = .105;
  real k42 = .2448;
  real k43 = .00675;
  real k44 = .018;
  real k45 = .012;
  real k46 = .54;
  real k47 = .105;
  real k48 = .2448;
  real k49 = .00675;
  real k50 = .018;
  real k51 = .012;
  real k52 = 11.1;
  real k53 = .075;
  real k54 = .82944;
  real k55 = 2.88;
  real k56 = .105;
  real k57 = .41472;
  real k58 = 4.2;
  real k59 = .105;
  real k60 = .41472;
  real k61 = .0072;
  real k62 = .2442;
  real k63 = .09;
  real k64 = .132;
  real NFkB(time) M;
  real IKKIkBa(time) M;
  real IKKIkBaNFkB(time) M;
  real IKK(time) M;
  real IkBa(time) M;
  real IKKIkBb(time) M;
  real IKKIkBbNFkB(time) M;
  real IkBb(time) M;
  real IKKIkBe(time) M;
  real IKKIkBeNFkB(time) M;
  real IkBe(time) M;
  real IkBaNFkB(time) M;
  real IkBbNFkB(time) M;
  real IkBeNFkB(time) M;
  real source_ = 1 M;
  real IkBat(time) M;
  real sink = 0 M;
  real NFkBn(time) M;
  real IkBan(time) M;
  real IkBanNFkBn(time) M;
  real IkBbn(time) M;
  real IkBbnNFkBn(time) M;
  real IkBbt(time) M;
  real IkBen(time) M;
  real IkBenNFkBn(time) M;
  real IkBet(time) M;
  real v1(time) katal;
  real v2(time) katal;
  real v3(time) katal;
  real v4(time) katal;
  real v5(time) katal;
  real v6(time) katal;
  real v7(time) katal;
  real v8(time) katal;
  real v9(time) katal;
  real v10(time) katal;
  real v11(time) katal;
  real v12(time) katal;
  real v13(time) katal;
  real v14(time) katal;
  real v15(time) katal;
  real v16(time) katal;
  real v17(time) katal;
  real v18(time) katal;
  real v19(time) katal;
  real v20(time) katal;
  real v21(time) katal;
  real v22(time) katal;
  real v23(time) katal;
  real v24(time) katal;
  real v25(time) katal;
  real v26(time) katal;
  real v27(time) katal;
  real v28(time) katal;
  real v29(time) katal;
  real v30(time) katal;
  real v31(time) katal;
  real v32(time) katal;
  real v33(time) katal;
  real v34(time) katal;
  real v35(time) katal;
  real v36(time) katal;
  real v37(time) katal;
  real v38(time) katal;
  real v39(time) katal;
  real v40(time) katal;
  real v41(time) katal;
  real v42(time) katal;
  real v43(time) katal;
  real v44(time) katal;
  real v45(time) katal;
  real v46(time) katal;
  real v47(time) katal;
  real v48(time) katal;
  real v49(time) katal;
  real v50(time) katal;
  real v51(time) katal;
  real v52(time) katal;
  real v53(time) katal;
  real v54(time) katal;
  real v55(time) katal;
  real v56(time) katal;
  real v57(time) katal;
  real v58(time) katal;
  real v59(time) katal;
  real v60(time) katal;
  real v61(time) katal;
  real v62(time) katal;
  real v63(time) katal;
  real v64(time) katal;

  // equations
  when (time=time.min) NFkB = 2.5081E-4;
  NFkB:time = (-1*v1 + v2 + v3 + -1*v7 + v8 + v9 + -1*v13 + v14 + v15 + -1*v25 + v27 + v31 + -1*v36 + v37 + v41 + -1*v46 + v47 + v51 + v56 + -1*v57)/compartment;
  when (time=time.min) IKKIkBa = 0;
  IKKIkBa:time = (-1*v1 + v3 + v4 + -1*v5 + -1*v6)/compartment;
  when (time=time.min) IKKIkBaNFkB = 0;
  IKKIkBaNFkB:time = (v1 + -1*v2 + -1*v3 + v19 + -1*v20)/compartment;
  when (time=time.min) IKK = .1;
  IKK:time = (v2 + -1*v4 + v5 + v6 + v8 + -1*v10 + v11 + v12 + v14 + -1*v16 + v17 + v18 + -1*v19 + v20 + -1*v21 + v22 + -1*v23 + v24 + -1*v64)/compartment;
  when (time=time.min) IkBa = .19028;
  IkBa:time = (-1*v4 + v6 + -1*v25 + v27 + v33 + -1*v34 + v35 + -1*v61)/compartment;
  when (time=time.min) IKKIkBb = 0;
  IKKIkBb:time = (-1*v7 + v9 + v10 + -1*v11 + -1*v12)/compartment;
  when (time=time.min) IKKIkBbNFkB = 0;
  IKKIkBbNFkB:time = (v7 + -1*v8 + -1*v9 + v21 + -1*v22)/compartment;
  when (time=time.min) IkBb = .021428;
  IkBb:time = (-1*v10 + v12 + -1*v36 + v37 + v43 + -1*v44 + v45 + -1*v62)/compartment;
  when (time=time.min) IKKIkBe = 0;
  IKKIkBe:time = (-1*v13 + v15 + v16 + -1*v17 + -1*v18)/compartment;
  when (time=time.min) IKKIkBeNFkB = 0;
  IKKIkBeNFkB:time = (v13 + -1*v14 + -1*v15 + v23 + -1*v24)/compartment;
  when (time=time.min) IkBe = .015307;
  IkBe:time = (-1*v16 + v18 + -1*v46 + v47 + v53 + -1*v54 + v55 + -1*v63)/compartment;
  when (time=time.min) IkBaNFkB = .082062;
  IkBaNFkB:time = (-1*v19 + v20 + v25 + -1*v27 + v30 + -1*v31)/compartment;
  when (time=time.min) IkBbNFkB = .0090963;
  IkBbNFkB:time = (-1*v21 + v22 + v36 + -1*v37 + v40 + -1*v41)/compartment;
  when (time=time.min) IkBeNFkB = .0064977;
  IkBeNFkB:time = (-1*v23 + v24 + v46 + -1*v47 + v50 + -1*v51)/compartment;
  when (time=time.min) IkBat = .0054868;
  IkBat:time = (v26 + -1*v32 + v58)/compartment;
  when (time=time.min) NFkBn = 2.0366E-4;
  NFkBn:time = (-1*v28 + v29 + -1*v38 + v39 + -1*v48 + v49 + -1*v56 + v57)/compartment;
  when (time=time.min) IkBan = .19326;
  IkBan:time = (-1*v28 + v29 + -1*v33 + v34)/compartment;
  when (time=time.min) IkBanNFkBn = .0013739;
  IkBanNFkBn:time = (v28 + -1*v29 + -1*v30)/compartment;
  when (time=time.min) IkBbn = .021887;
  IkBbn:time = (-1*v38 + v39 + -1*v43 + v44)/compartment;
  when (time=time.min) IkBbnNFkBn = 3.0061E-4;
  IkBbnNFkBn:time = (v38 + -1*v39 + -1*v40)/compartment;
  when (time=time.min) IkBbt = 6.3696E-4;
  IkBbt:time = (-1*v42 + v59)/compartment;
  when (time=time.min) IkBen = .015635;
  IkBen:time = (-1*v48 + v49 + -1*v53 + v54)/compartment;
  when (time=time.min) IkBenNFkBn = 2.1473E-4;
  IkBenNFkBn:time = (v48 + -1*v49 + -1*v50)/compartment;
  when (time=time.min) IkBet = 4.55E-4;
  IkBet:time = (-1*v52 + v60)/compartment;
  v1 = k7*IKKIkBa*NFkB;
  v2 = k9*IKKIkBaNFkB;
  v3 = k8*IKKIkBaNFkB;
  v4 = k34*IKK*IkBa;
  v5 = k62*IKKIkBa;
  v6 = k35*IKKIkBa;
  v7 = k10*IKKIkBb*NFkB;
  v8 = k12*IKKIkBbNFkB;
  v9 = k11*IKKIkBbNFkB;
  v10 = k40*IKK*IkBb;
  v11 = k63*IKKIkBb;
  v12 = k41*IKKIkBb;
  v13 = k13*IKKIkBe*NFkB;
  v14 = k15*IKKIkBeNFkB;
  v15 = k14*IKKIkBeNFkB;
  v16 = k46*IKK*IkBe;
  v17 = k64*IKKIkBe;
  v18 = k47*IKKIkBe;
  v19 = k52*IKK*IkBaNFkB;
  v20 = k53*IKKIkBaNFkB;
  v21 = k55*IKK*IkBbNFkB;
  v22 = k56*IKKIkBbNFkB;
  v23 = k58*IKK*IkBeNFkB;
  v24 = k59*IKKIkBeNFkB;
  v25 = k1*IkBa*NFkB;
  v26 = k28*NFkBn*NFkBn;
  v27 = k2*IkBaNFkB;
  v28 = k21*IkBan*NFkBn;
  v29 = k22*IkBanNFkBn;
  v30 = k54*IkBanNFkBn;
  v31 = k16*IkBaNFkB;
  v32 = k29*IkBat;
  v33 = k39*IkBan;
  v34 = k38*IkBa;
  v35 = k36*IkBat;
  v36 = k3*IkBb*NFkB;
  v37 = k4*IkBbNFkB;
  v38 = k23*IkBbn*NFkBn;
  v39 = k24*IkBbnNFkBn;
  v40 = k57*IkBbnNFkBn;
  v41 = k17*IkBbNFkB;
  v42 = k31*IkBbt;
  v43 = k45*IkBbn;
  v44 = k44*IkBb;
  v45 = k42*IkBbt;
  v46 = k5*IkBe*NFkB;
  v47 = k6*IkBeNFkB;
  v48 = k25*IkBen*NFkBn;
  v49 = k26*IkBenNFkBn;
  v50 = k60*IkBenNFkBn;
  v51 = k18*IkBeNFkB;
  v52 = k33*IkBet;
  v53 = k51*IkBen;
  v54 = k50*IkBe;
  v55 = k48*IkBet;
  v56 = k20*NFkBn;
  v57 = k19*NFkB;
  v58 = k27*source_;
  v59 = k30*source_;
  v60 = k32*source_;
  v61 = k37*IkBa;
  v62 = k43*IkBb;
  v63 = k49*IkBe;
  v64 = k61*IKK;

  // variable properties
  compartment.sbmlRole="compartment";
  k1.sbmlRole="parameter";
  k2.sbmlRole="parameter";
  k3.sbmlRole="parameter";
  k4.sbmlRole="parameter";
  k5.sbmlRole="parameter";
  k6.sbmlRole="parameter";
  k7.sbmlRole="parameter";
  k8.sbmlRole="parameter";
  k9.sbmlRole="parameter";
  k10.sbmlRole="parameter";
  k11.sbmlRole="parameter";
  k12.sbmlRole="parameter";
  k13.sbmlRole="parameter";
  k14.sbmlRole="parameter";
  k15.sbmlRole="parameter";
  k16.sbmlRole="parameter";
  k17.sbmlRole="parameter";
  k18.sbmlRole="parameter";
  k19.sbmlRole="parameter";
  k20.sbmlRole="parameter";
  k21.sbmlRole="parameter";
  k22.sbmlRole="parameter";
  k23.sbmlRole="parameter";
  k24.sbmlRole="parameter";
  k25.sbmlRole="parameter";
  k26.sbmlRole="parameter";
  k27.sbmlRole="parameter";
  k28.sbmlRole="parameter";
  k29.sbmlRole="parameter";
  k30.sbmlRole="parameter";
  k31.sbmlRole="parameter";
  k32.sbmlRole="parameter";
  k33.sbmlRole="parameter";
  k34.sbmlRole="parameter";
  k35.sbmlRole="parameter";
  k36.sbmlRole="parameter";
  k37.sbmlRole="parameter";
  k38.sbmlRole="parameter";
  k39.sbmlRole="parameter";
  k40.sbmlRole="parameter";
  k41.sbmlRole="parameter";
  k42.sbmlRole="parameter";
  k43.sbmlRole="parameter";
  k44.sbmlRole="parameter";
  k45.sbmlRole="parameter";
  k46.sbmlRole="parameter";
  k47.sbmlRole="parameter";
  k48.sbmlRole="parameter";
  k49.sbmlRole="parameter";
  k50.sbmlRole="parameter";
  k51.sbmlRole="parameter";
  k52.sbmlRole="parameter";
  k53.sbmlRole="parameter";
  k54.sbmlRole="parameter";
  k55.sbmlRole="parameter";
  k56.sbmlRole="parameter";
  k57.sbmlRole="parameter";
  k58.sbmlRole="parameter";
  k59.sbmlRole="parameter";
  k60.sbmlRole="parameter";
  k61.sbmlRole="parameter";
  k62.sbmlRole="parameter";
  k63.sbmlRole="parameter";
  k64.sbmlRole="parameter";
  NFkB.sbmlRole="species";
  NFkB.sbmlCompartment="compartment";
  IKKIkBa.sbmlRole="species";
  IKKIkBa.sbmlCompartment="compartment";
  IKKIkBaNFkB.sbmlRole="species";
  IKKIkBaNFkB.sbmlCompartment="compartment";
  IKK.sbmlRole="species";
  IKK.sbmlCompartment="compartment";
  IkBa.sbmlRole="species";
  IkBa.sbmlCompartment="compartment";
  IKKIkBb.sbmlRole="species";
  IKKIkBb.sbmlCompartment="compartment";
  IKKIkBbNFkB.sbmlRole="species";
  IKKIkBbNFkB.sbmlCompartment="compartment";
  IkBb.sbmlRole="species";
  IkBb.sbmlCompartment="compartment";
  IKKIkBe.sbmlRole="species";
  IKKIkBe.sbmlCompartment="compartment";
  IKKIkBeNFkB.sbmlRole="species";
  IKKIkBeNFkB.sbmlCompartment="compartment";
  IkBe.sbmlRole="species";
  IkBe.sbmlCompartment="compartment";
  IkBaNFkB.sbmlRole="species";
  IkBaNFkB.sbmlCompartment="compartment";
  IkBbNFkB.sbmlRole="species";
  IkBbNFkB.sbmlCompartment="compartment";
  IkBeNFkB.sbmlRole="species";
  IkBeNFkB.sbmlCompartment="compartment";
  source_.sbmlRole="species";
  source_.sbmlCompartment="compartment";
  IkBat.sbmlRole="species";
  IkBat.sbmlCompartment="compartment";
  sink.sbmlRole="species";
  sink.sbmlCompartment="compartment";
  NFkBn.sbmlRole="species";
  NFkBn.sbmlCompartment="compartment";
  IkBan.sbmlRole="species";
  IkBan.sbmlCompartment="compartment";
  IkBanNFkBn.sbmlRole="species";
  IkBanNFkBn.sbmlCompartment="compartment";
  IkBbn.sbmlRole="species";
  IkBbn.sbmlCompartment="compartment";
  IkBbnNFkBn.sbmlRole="species";
  IkBbnNFkBn.sbmlCompartment="compartment";
  IkBbt.sbmlRole="species";
  IkBbt.sbmlCompartment="compartment";
  IkBen.sbmlRole="species";
  IkBen.sbmlCompartment="compartment";
  IkBenNFkBn.sbmlRole="species";
  IkBenNFkBn.sbmlCompartment="compartment";
  IkBet.sbmlRole="species";
  IkBet.sbmlCompartment="compartment";
  v1.sbmlRole="rate";
  v2.sbmlRole="rate";
  v3.sbmlRole="rate";
  v4.sbmlRole="rate";
  v5.sbmlRole="rate";
  v6.sbmlRole="rate";
  v7.sbmlRole="rate";
  v8.sbmlRole="rate";
  v9.sbmlRole="rate";
  v10.sbmlRole="rate";
  v11.sbmlRole="rate";
  v12.sbmlRole="rate";
  v13.sbmlRole="rate";
  v14.sbmlRole="rate";
  v15.sbmlRole="rate";
  v16.sbmlRole="rate";
  v17.sbmlRole="rate";
  v18.sbmlRole="rate";
  v19.sbmlRole="rate";
  v20.sbmlRole="rate";
  v21.sbmlRole="rate";
  v22.sbmlRole="rate";
  v23.sbmlRole="rate";
  v24.sbmlRole="rate";
  v25.sbmlRole="rate";
  v26.sbmlRole="rate";
  v27.sbmlRole="rate";
  v28.sbmlRole="rate";
  v29.sbmlRole="rate";
  v30.sbmlRole="rate";
  v31.sbmlRole="rate";
  v32.sbmlRole="rate";
  v33.sbmlRole="rate";
  v34.sbmlRole="rate";
  v35.sbmlRole="rate";
  v36.sbmlRole="rate";
  v37.sbmlRole="rate";
  v38.sbmlRole="rate";
  v39.sbmlRole="rate";
  v40.sbmlRole="rate";
  v41.sbmlRole="rate";
  v42.sbmlRole="rate";
  v43.sbmlRole="rate";
  v44.sbmlRole="rate";
  v45.sbmlRole="rate";
  v46.sbmlRole="rate";
  v47.sbmlRole="rate";
  v48.sbmlRole="rate";
  v49.sbmlRole="rate";
  v50.sbmlRole="rate";
  v51.sbmlRole="rate";
  v52.sbmlRole="rate";
  v53.sbmlRole="rate";
  v54.sbmlRole="rate";
  v55.sbmlRole="rate";
  v56.sbmlRole="rate";
  v57.sbmlRole="rate";
  v58.sbmlRole="rate";
  v59.sbmlRole="rate";
  v60.sbmlRole="rate";
  v61.sbmlRole="rate";
  v62.sbmlRole="rate";
  v63.sbmlRole="rate";
  v64.sbmlRole="rate";
}