// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03659: L_minus_Methionine <=> L_minus_Methionyl_minus_tRNA 
// R00192: S_minus_Adenosyl_minus_L_minus_homocysteine => L_minus_Homocysteine 
// R04858: S_minus_Adenosyl_minus_L_minus_methionine => S_minus_Adenosyl_minus_L_minus_homocysteine 
// R01402: space_5_space_minus_Methylthioadenosine <=> S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate 
// R04405: L_minus_Homocysteine <=> L_minus_Methionine 
// R03940: L_minus_Methionyl_minus_tRNA <=> N_minus_Formylmethionyl_minus_tRNA 
// R00178: S_minus_Adenosyl_minus_L_minus_methionine <=> S_minus_Adenosylmethioninamine 
// R00177: L_minus_Methionine <=> S_minus_Adenosyl_minus_L_minus_methionine 
// R04420: S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate <=> S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribulose_space_1_minus_phosphate 
// R01920: S_minus_Adenosylmethioninamine <=> space_5_space_minus_Methylthioadenosine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_1_space_2_space_9 = 0 M;
  real E6_space_1_space_1_space_10 = 0 M;
  real E2_space_1_space_1_space_14 = 0 M;
  real E3_space_3_space_1_space_1 = 0 M;
  real E2_space_5_space_1_space_6 = 0 M;
  real E2_space_1_space_1_space_37 = 0 M;
  real E4_space_1_space_1_space_50 = 0 M;
  real E2_space_5_space_1_space_16 = 0 M;
  real E5_space_3_space_1_space_23 = 0 M;
  real E2_space_4_space_2_space_28 = 0 M;
  real N_minus_Formylmethionyl_minus_tRNA(time) M;
  real L_minus_Methionyl_minus_tRNA(time) M;
  real L_minus_Homocysteine(time) M;
  real L_minus_Methionine(time) M;
  real S_minus_Adenosyl_minus_L_minus_homocysteine(time) M;
  real S_minus_Adenosyl_minus_L_minus_methionine(time) M;
  real S_minus_Adenosylmethioninamine(time) M;
  real space_5_space_minus_Methylthioadenosine(time) M;
  real S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate(time) M;
  real S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribulose_space_1_minus_phosphate(time) M;
  real R03659(time) katal;
  extern real R03659.kf;
  extern real R03659.kb;
  real R00192(time) katal;
  extern real R00192.kf;
  extern real R00192.kb;
  real R04858(time) katal;
  extern real R04858.kf;
  extern real R04858.kb;
  real R01402(time) katal;
  extern real R01402.kf;
  extern real R01402.kb;
  real R04405(time) katal;
  extern real R04405.kf;
  extern real R04405.kb;
  real R03940(time) katal;
  extern real R03940.kf;
  extern real R03940.kb;
  real R00178(time) katal;
  extern real R00178.kf;
  extern real R00178.kb;
  real R00177(time) katal;
  extern real R00177.kf;
  extern real R00177.kb;
  real R04420(time) katal;
  extern real R04420.kf;
  extern real R04420.kb;
  real R01920(time) katal;
  extern real R01920.kf;
  extern real R01920.kb;

  // equations
  when (time=time.min) N_minus_Formylmethionyl_minus_tRNA = 0;
  N_minus_Formylmethionyl_minus_tRNA:time = (R03940)/uVol;
  when (time=time.min) L_minus_Methionyl_minus_tRNA = 0;
  L_minus_Methionyl_minus_tRNA:time = (R03659 + -1*R03940)/uVol;
  when (time=time.min) L_minus_Homocysteine = 0;
  L_minus_Homocysteine:time = (R00192 + -1*R04405)/uVol;
  when (time=time.min) L_minus_Methionine = 0;
  L_minus_Methionine:time = (-1*R03659 + R04405 + -1*R00177)/uVol;
  when (time=time.min) S_minus_Adenosyl_minus_L_minus_homocysteine = 0;
  S_minus_Adenosyl_minus_L_minus_homocysteine:time = (-1*R00192 + R04858)/uVol;
  when (time=time.min) S_minus_Adenosyl_minus_L_minus_methionine = 0;
  S_minus_Adenosyl_minus_L_minus_methionine:time = (-1*R04858 + -1*R00178 + R00177)/uVol;
  when (time=time.min) S_minus_Adenosylmethioninamine = 0;
  S_minus_Adenosylmethioninamine:time = (R00178 + -1*R01920)/uVol;
  when (time=time.min) space_5_space_minus_Methylthioadenosine = 0;
  space_5_space_minus_Methylthioadenosine:time = (-1*R01402 + R01920)/uVol;
  when (time=time.min) S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate = 0;
  S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate:time = (R01402 + -1*R04420)/uVol;
  when (time=time.min) S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribulose_space_1_minus_phosphate = 0;
  S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribulose_space_1_minus_phosphate:time = (R04420)/uVol;
  R03659 = R03659.kf*L_minus_Methionine - R03659.kb*L_minus_Methionyl_minus_tRNA;
  R00192 = R00192.kf*S_minus_Adenosyl_minus_L_minus_homocysteine - R00192.kb*L_minus_Homocysteine;
  R04858 = R04858.kf*S_minus_Adenosyl_minus_L_minus_methionine - R04858.kb*S_minus_Adenosyl_minus_L_minus_homocysteine;
  R01402 = R01402.kf*space_5_space_minus_Methylthioadenosine - R01402.kb*S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate;
  R04405 = R04405.kf*L_minus_Homocysteine - R04405.kb*L_minus_Methionine;
  R03940 = R03940.kf*L_minus_Methionyl_minus_tRNA - R03940.kb*N_minus_Formylmethionyl_minus_tRNA;
  R00178 = R00178.kf*S_minus_Adenosyl_minus_L_minus_methionine - R00178.kb*S_minus_Adenosylmethioninamine;
  R00177 = R00177.kf*L_minus_Methionine - R00177.kb*S_minus_Adenosyl_minus_L_minus_methionine;
  R04420 = R04420.kf*S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate - R04420.kb*S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribulose_space_1_minus_phosphate;
  R01920 = R01920.kf*S_minus_Adenosylmethioninamine - R01920.kb*space_5_space_minus_Methylthioadenosine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_1_space_2_space_9.sbmlRole="species";
  E2_space_1_space_2_space_9.sbmlCompartment="uVol";
  E6_space_1_space_1_space_10.sbmlRole="species";
  E6_space_1_space_1_space_10.sbmlCompartment="uVol";
  E2_space_1_space_1_space_14.sbmlRole="species";
  E2_space_1_space_1_space_14.sbmlCompartment="uVol";
  E3_space_3_space_1_space_1.sbmlRole="species";
  E3_space_3_space_1_space_1.sbmlCompartment="uVol";
  E2_space_5_space_1_space_6.sbmlRole="species";
  E2_space_5_space_1_space_6.sbmlCompartment="uVol";
  E2_space_1_space_1_space_37.sbmlRole="species";
  E2_space_1_space_1_space_37.sbmlCompartment="uVol";
  E4_space_1_space_1_space_50.sbmlRole="species";
  E4_space_1_space_1_space_50.sbmlCompartment="uVol";
  E2_space_5_space_1_space_16.sbmlRole="species";
  E2_space_5_space_1_space_16.sbmlCompartment="uVol";
  E5_space_3_space_1_space_23.sbmlRole="species";
  E5_space_3_space_1_space_23.sbmlCompartment="uVol";
  E2_space_4_space_2_space_28.sbmlRole="species";
  E2_space_4_space_2_space_28.sbmlCompartment="uVol";
  N_minus_Formylmethionyl_minus_tRNA.sbmlRole="species";
  N_minus_Formylmethionyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Methionyl_minus_tRNA.sbmlRole="species";
  L_minus_Methionyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Homocysteine.sbmlRole="species";
  L_minus_Homocysteine.sbmlCompartment="uVol";
  L_minus_Methionine.sbmlRole="species";
  L_minus_Methionine.sbmlCompartment="uVol";
  S_minus_Adenosyl_minus_L_minus_homocysteine.sbmlRole="species";
  S_minus_Adenosyl_minus_L_minus_homocysteine.sbmlCompartment="uVol";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlRole="species";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlCompartment="uVol";
  S_minus_Adenosylmethioninamine.sbmlRole="species";
  S_minus_Adenosylmethioninamine.sbmlCompartment="uVol";
  space_5_space_minus_Methylthioadenosine.sbmlRole="species";
  space_5_space_minus_Methylthioadenosine.sbmlCompartment="uVol";
  S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate.sbmlRole="species";
  S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribose_space_1_minus_phosphate.sbmlCompartment="uVol";
  S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribulose_space_1_minus_phosphate.sbmlRole="species";
  S_minus_Methyl_minus_5_minus_thio_minus_D_minus_ribulose_space_1_minus_phosphate.sbmlCompartment="uVol";
  R03659.sbmlRole="rate";
  R03659.kf.sbmlRole="rate";
  R03659.kb.sbmlRole="rate";
  R00192.sbmlRole="rate";
  R00192.kf.sbmlRole="rate";
  R00192.kb.sbmlRole="rate";
  R04858.sbmlRole="rate";
  R04858.kf.sbmlRole="rate";
  R04858.kb.sbmlRole="rate";
  R01402.sbmlRole="rate";
  R01402.kf.sbmlRole="rate";
  R01402.kb.sbmlRole="rate";
  R04405.sbmlRole="rate";
  R04405.kf.sbmlRole="rate";
  R04405.kb.sbmlRole="rate";
  R03940.sbmlRole="rate";
  R03940.kf.sbmlRole="rate";
  R03940.kb.sbmlRole="rate";
  R00178.sbmlRole="rate";
  R00178.kf.sbmlRole="rate";
  R00178.kb.sbmlRole="rate";
  R00177.sbmlRole="rate";
  R00177.kf.sbmlRole="rate";
  R00177.kb.sbmlRole="rate";
  R04420.sbmlRole="rate";
  R04420.kf.sbmlRole="rate";
  R04420.kb.sbmlRole="rate";
  R01920.sbmlRole="rate";
  R01920.kf.sbmlRole="rate";
  R01920.kb.sbmlRole="rate";
}