// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02735: LL_minus_2_space_6_minus_Diaminoheptanedioate => meso_minus_2_space_6_minus_Diaminoheptanedioate 
// R02788: meso_minus_2_space_6_minus_Diaminoheptanedioate <=> UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ 
// R04198: space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate => L_minus_2_space_3_minus_Dihydrodipicolinate 
// R02292: L_minus_Aspartate_space_4_minus_semialdehyde <=> L_minus_2_space_3_minus_Dihydrodipicolinate 
// R00480: L_minus_Aspartate <=> space_4_minus_Phospho_minus_L_minus_aspartate 
// R03658: L_minus_Lysine <=> L_minus_Lysyl_minus_tRNA 
// R02734: N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate <=> LL_minus_2_space_6_minus_Diaminoheptanedioate 
// R01773: L_minus_Homoserine => L_minus_Aspartate_space_4_minus_semialdehyde 
// R04617: UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ <=> UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_ 
// R00451: meso_minus_2_space_6_minus_Diaminoheptanedioate <=> L_minus_Lysine 
// R04475: N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate => N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate 
// R02291: L_minus_Aspartate_space_4_minus_semialdehyde <=> space_4_minus_Phospho_minus_L_minus_aspartate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_2_space_4 = 0 M;
  real E1_space_2_space_1_space_11 = 0 M;
  real E1_space_1_space_1_space_3 = 0 M;
  real E4_space_2_space_1_space_52 = 0 M;
  real E6_space_3_space_2_space_10 = 0 M;
  real E1_space_3_space_1_space_26 = 0 M;
  real E6_space_3_space_2_space_13 = 0 M;
  real E2_space_6_space_1_space_17 = 0 M;
  real E3_space_5_space_1_space_18 = 0 M;
  real E5_space_1_space_1_space_7 = 0 M;
  real E4_space_1_space_1_space_20 = 0 M;
  real E6_space_1_space_1_space_6 = 0 M;
  real space_4_minus_Phospho_minus_L_minus_aspartate(time) M;
  real L_minus_Homoserine(time) M;
  real L_minus_Aspartate_space_4_minus_semialdehyde(time) M;
  real UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_(time) M;
  real L_minus_2_space_3_minus_Dihydrodipicolinate(time) M;
  real space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate(time) M;
  real UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_(time) M;
  real N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate(time) M;
  real N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate(time) M;
  real LL_minus_2_space_6_minus_Diaminoheptanedioate(time) M;
  real meso_minus_2_space_6_minus_Diaminoheptanedioate(time) M;
  real L_minus_Lysine(time) M;
  real L_minus_Lysyl_minus_tRNA(time) M;
  real L_minus_Aspartate(time) M;
  real R02735(time) katal;
  extern real R02735.kf;
  extern real R02735.kb;
  real R02788(time) katal;
  extern real R02788.kf;
  extern real R02788.kb;
  real R04198(time) katal;
  extern real R04198.kf;
  extern real R04198.kb;
  real R02292(time) katal;
  extern real R02292.kf;
  extern real R02292.kb;
  real R00480(time) katal;
  extern real R00480.kf;
  extern real R00480.kb;
  real R03658(time) katal;
  extern real R03658.kf;
  extern real R03658.kb;
  real R02734(time) katal;
  extern real R02734.kf;
  extern real R02734.kb;
  real R01773(time) katal;
  extern real R01773.kf;
  extern real R01773.kb;
  real R04617(time) katal;
  extern real R04617.kf;
  extern real R04617.kb;
  real R00451(time) katal;
  extern real R00451.kf;
  extern real R00451.kb;
  real R04475(time) katal;
  extern real R04475.kf;
  extern real R04475.kb;
  real R02291(time) katal;
  extern real R02291.kf;
  extern real R02291.kb;

  // equations
  when (time=time.min) space_4_minus_Phospho_minus_L_minus_aspartate = 0;
  space_4_minus_Phospho_minus_L_minus_aspartate:time = (R00480 + R02291)/uVol;
  when (time=time.min) L_minus_Homoserine = 0;
  L_minus_Homoserine:time = (-1*R01773)/uVol;
  when (time=time.min) L_minus_Aspartate_space_4_minus_semialdehyde = 0;
  L_minus_Aspartate_space_4_minus_semialdehyde:time = (-1*R02292 + R01773 + -1*R02291)/uVol;
  when (time=time.min) UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_ = 0;
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_:time = (R04617)/uVol;
  when (time=time.min) L_minus_2_space_3_minus_Dihydrodipicolinate = 0;
  L_minus_2_space_3_minus_Dihydrodipicolinate:time = (R04198 + R02292)/uVol;
  when (time=time.min) space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate = 0;
  space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate:time = (-1*R04198)/uVol;
  when (time=time.min) UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ = 0;
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_:time = (R02788 + -1*R04617)/uVol;
  when (time=time.min) N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate = 0;
  N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate:time = (R04475)/uVol;
  when (time=time.min) N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate = 0;
  N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate:time = (-1*R02734 + -1*R04475)/uVol;
  when (time=time.min) LL_minus_2_space_6_minus_Diaminoheptanedioate = 0;
  LL_minus_2_space_6_minus_Diaminoheptanedioate:time = (-1*R02735 + R02734)/uVol;
  when (time=time.min) meso_minus_2_space_6_minus_Diaminoheptanedioate = 0;
  meso_minus_2_space_6_minus_Diaminoheptanedioate:time = (R02735 + -1*R02788 + -1*R00451)/uVol;
  when (time=time.min) L_minus_Lysine = 0;
  L_minus_Lysine:time = (-1*R03658 + R00451)/uVol;
  when (time=time.min) L_minus_Lysyl_minus_tRNA = 0;
  L_minus_Lysyl_minus_tRNA:time = (R03658)/uVol;
  when (time=time.min) L_minus_Aspartate = 0;
  L_minus_Aspartate:time = (-1*R00480)/uVol;
  R02735 = R02735.kf*LL_minus_2_space_6_minus_Diaminoheptanedioate - R02735.kb*meso_minus_2_space_6_minus_Diaminoheptanedioate;
  R02788 = R02788.kf*meso_minus_2_space_6_minus_Diaminoheptanedioate - R02788.kb*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_;
  R04198 = R04198.kf*space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate - R04198.kb*L_minus_2_space_3_minus_Dihydrodipicolinate;
  R02292 = R02292.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R02292.kb*L_minus_2_space_3_minus_Dihydrodipicolinate;
  R00480 = R00480.kf*L_minus_Aspartate - R00480.kb*space_4_minus_Phospho_minus_L_minus_aspartate;
  R03658 = R03658.kf*L_minus_Lysine - R03658.kb*L_minus_Lysyl_minus_tRNA;
  R02734 = R02734.kf*N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate - R02734.kb*LL_minus_2_space_6_minus_Diaminoheptanedioate;
  R01773 = R01773.kf*L_minus_Homoserine - R01773.kb*L_minus_Aspartate_space_4_minus_semialdehyde;
  R04617 = R04617.kf*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ - R04617.kb*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_;
  R00451 = R00451.kf*meso_minus_2_space_6_minus_Diaminoheptanedioate - R00451.kb*L_minus_Lysine;
  R04475 = R04475.kf*N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate - R04475.kb*N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate;
  R02291 = R02291.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R02291.kb*space_4_minus_Phospho_minus_L_minus_aspartate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_2_space_4.sbmlRole="species";
  E2_space_7_space_2_space_4.sbmlCompartment="uVol";
  E1_space_2_space_1_space_11.sbmlRole="species";
  E1_space_2_space_1_space_11.sbmlCompartment="uVol";
  E1_space_1_space_1_space_3.sbmlRole="species";
  E1_space_1_space_1_space_3.sbmlCompartment="uVol";
  E4_space_2_space_1_space_52.sbmlRole="species";
  E4_space_2_space_1_space_52.sbmlCompartment="uVol";
  E6_space_3_space_2_space_10.sbmlRole="species";
  E6_space_3_space_2_space_10.sbmlCompartment="uVol";
  E1_space_3_space_1_space_26.sbmlRole="species";
  E1_space_3_space_1_space_26.sbmlCompartment="uVol";
  E6_space_3_space_2_space_13.sbmlRole="species";
  E6_space_3_space_2_space_13.sbmlCompartment="uVol";
  E2_space_6_space_1_space_17.sbmlRole="species";
  E2_space_6_space_1_space_17.sbmlCompartment="uVol";
  E3_space_5_space_1_space_18.sbmlRole="species";
  E3_space_5_space_1_space_18.sbmlCompartment="uVol";
  E5_space_1_space_1_space_7.sbmlRole="species";
  E5_space_1_space_1_space_7.sbmlCompartment="uVol";
  E4_space_1_space_1_space_20.sbmlRole="species";
  E4_space_1_space_1_space_20.sbmlCompartment="uVol";
  E6_space_1_space_1_space_6.sbmlRole="species";
  E6_space_1_space_1_space_6.sbmlCompartment="uVol";
  space_4_minus_Phospho_minus_L_minus_aspartate.sbmlRole="species";
  space_4_minus_Phospho_minus_L_minus_aspartate.sbmlCompartment="uVol";
  L_minus_Homoserine.sbmlRole="species";
  L_minus_Homoserine.sbmlCompartment="uVol";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlRole="species";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_.sbmlRole="species";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_.sbmlCompartment="uVol";
  L_minus_2_space_3_minus_Dihydrodipicolinate.sbmlRole="species";
  L_minus_2_space_3_minus_Dihydrodipicolinate.sbmlCompartment="uVol";
  space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate.sbmlRole="species";
  space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_.sbmlRole="species";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_.sbmlCompartment="uVol";
  N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate.sbmlRole="species";
  N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate.sbmlCompartment="uVol";
  N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate.sbmlRole="species";
  N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate.sbmlCompartment="uVol";
  LL_minus_2_space_6_minus_Diaminoheptanedioate.sbmlRole="species";
  LL_minus_2_space_6_minus_Diaminoheptanedioate.sbmlCompartment="uVol";
  meso_minus_2_space_6_minus_Diaminoheptanedioate.sbmlRole="species";
  meso_minus_2_space_6_minus_Diaminoheptanedioate.sbmlCompartment="uVol";
  L_minus_Lysine.sbmlRole="species";
  L_minus_Lysine.sbmlCompartment="uVol";
  L_minus_Lysyl_minus_tRNA.sbmlRole="species";
  L_minus_Lysyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  R02735.sbmlRole="rate";
  R02735.kf.sbmlRole="rate";
  R02735.kb.sbmlRole="rate";
  R02788.sbmlRole="rate";
  R02788.kf.sbmlRole="rate";
  R02788.kb.sbmlRole="rate";
  R04198.sbmlRole="rate";
  R04198.kf.sbmlRole="rate";
  R04198.kb.sbmlRole="rate";
  R02292.sbmlRole="rate";
  R02292.kf.sbmlRole="rate";
  R02292.kb.sbmlRole="rate";
  R00480.sbmlRole="rate";
  R00480.kf.sbmlRole="rate";
  R00480.kb.sbmlRole="rate";
  R03658.sbmlRole="rate";
  R03658.kf.sbmlRole="rate";
  R03658.kb.sbmlRole="rate";
  R02734.sbmlRole="rate";
  R02734.kf.sbmlRole="rate";
  R02734.kb.sbmlRole="rate";
  R01773.sbmlRole="rate";
  R01773.kf.sbmlRole="rate";
  R01773.kb.sbmlRole="rate";
  R04617.sbmlRole="rate";
  R04617.kf.sbmlRole="rate";
  R04617.kb.sbmlRole="rate";
  R00451.sbmlRole="rate";
  R00451.kf.sbmlRole="rate";
  R00451.kb.sbmlRole="rate";
  R04475.sbmlRole="rate";
  R04475.kf.sbmlRole="rate";
  R04475.kb.sbmlRole="rate";
  R02291.sbmlRole="rate";
  R02291.kf.sbmlRole="rate";
  R02291.kb.sbmlRole="rate";
}