// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04313: Protein_space_N6_space_N6_space_N6_minus_trimethyl_minus_L_minus_lysine <=> N6_space_N6_space_N6_minus_Trimethyl_minus_L_minus_lysine 
// R00461: L_minus_Lysine <=> space_3S_space_minus_3_space_6_minus_Diaminohexanoate 
// R03283: space_4_minus_Trimethylammoniobutanal <=> space_4_minus_Trimethylammoniobutanoate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E3_space_4_space_minus_space_minus_ = 0 M;
  real E5_space_4_space_3_space_2 = 0 M;
  real E1_space_2_space_1_space_3 = 0 M;
  real Protein_space_N6_space_N6_space_N6_minus_trimethyl_minus_L_minus_lysine(time) M;
  real N6_space_N6_space_N6_minus_Trimethyl_minus_L_minus_lysine(time) M;
  real L_minus_Lysine(time) M;
  real space_4_minus_Trimethylammoniobutanal(time) M;
  real space_3S_space_minus_3_space_6_minus_Diaminohexanoate(time) M;
  real space_4_minus_Trimethylammoniobutanoate(time) M;
  real R04313(time) katal;
  extern real R04313.kf;
  extern real R04313.kb;
  real R00461(time) katal;
  extern real R00461.kf;
  extern real R00461.kb;
  real R03283(time) katal;
  extern real R03283.kf;
  extern real R03283.kb;

  // equations
  when (time=time.min) Protein_space_N6_space_N6_space_N6_minus_trimethyl_minus_L_minus_lysine = 0;
  Protein_space_N6_space_N6_space_N6_minus_trimethyl_minus_L_minus_lysine:time = (-1*R04313)/uVol;
  when (time=time.min) N6_space_N6_space_N6_minus_Trimethyl_minus_L_minus_lysine = 0;
  N6_space_N6_space_N6_minus_Trimethyl_minus_L_minus_lysine:time = (R04313)/uVol;
  when (time=time.min) L_minus_Lysine = 0;
  L_minus_Lysine:time = (-1*R00461)/uVol;
  when (time=time.min) space_4_minus_Trimethylammoniobutanal = 0;
  space_4_minus_Trimethylammoniobutanal:time = (-1*R03283)/uVol;
  when (time=time.min) space_3S_space_minus_3_space_6_minus_Diaminohexanoate = 0;
  space_3S_space_minus_3_space_6_minus_Diaminohexanoate:time = (R00461)/uVol;
  when (time=time.min) space_4_minus_Trimethylammoniobutanoate = 0;
  space_4_minus_Trimethylammoniobutanoate:time = (R03283)/uVol;
  R04313 = R04313.kf*Protein_space_N6_space_N6_space_N6_minus_trimethyl_minus_L_minus_lysine - R04313.kb*N6_space_N6_space_N6_minus_Trimethyl_minus_L_minus_lysine;
  R00461 = R00461.kf*L_minus_Lysine - R00461.kb*space_3S_space_minus_3_space_6_minus_Diaminohexanoate;
  R03283 = R03283.kf*space_4_minus_Trimethylammoniobutanal - R03283.kb*space_4_minus_Trimethylammoniobutanoate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E3_space_4_space_minus_space_minus_.sbmlRole="species";
  E3_space_4_space_minus_space_minus_.sbmlCompartment="uVol";
  E5_space_4_space_3_space_2.sbmlRole="species";
  E5_space_4_space_3_space_2.sbmlCompartment="uVol";
  E1_space_2_space_1_space_3.sbmlRole="species";
  E1_space_2_space_1_space_3.sbmlCompartment="uVol";
  Protein_space_N6_space_N6_space_N6_minus_trimethyl_minus_L_minus_lysine.sbmlRole="species";
  Protein_space_N6_space_N6_space_N6_minus_trimethyl_minus_L_minus_lysine.sbmlCompartment="uVol";
  N6_space_N6_space_N6_minus_Trimethyl_minus_L_minus_lysine.sbmlRole="species";
  N6_space_N6_space_N6_minus_Trimethyl_minus_L_minus_lysine.sbmlCompartment="uVol";
  L_minus_Lysine.sbmlRole="species";
  L_minus_Lysine.sbmlCompartment="uVol";
  space_4_minus_Trimethylammoniobutanal.sbmlRole="species";
  space_4_minus_Trimethylammoniobutanal.sbmlCompartment="uVol";
  space_3S_space_minus_3_space_6_minus_Diaminohexanoate.sbmlRole="species";
  space_3S_space_minus_3_space_6_minus_Diaminohexanoate.sbmlCompartment="uVol";
  space_4_minus_Trimethylammoniobutanoate.sbmlRole="species";
  space_4_minus_Trimethylammoniobutanoate.sbmlCompartment="uVol";
  R04313.sbmlRole="rate";
  R04313.kf.sbmlRole="rate";
  R04313.kb.sbmlRole="rate";
  R00461.sbmlRole="rate";
  R00461.kf.sbmlRole="rate";
  R00461.kb.sbmlRole="rate";
  R03283.sbmlRole="rate";
  R03283.kf.sbmlRole="rate";
  R03283.kb.sbmlRole="rate";
}