// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00289: D_minus_Glucose_space_1_minus_phosphate <=> UDP_minus_glucose 
// R05605: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate => space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal 
// R02361: Pectate <=> space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate 
// R01529: D_minus_Ribulose_space_5_minus_phosphate => D_minus_Xylulose_space_5_minus_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_1_space_2_space_14 = 0 M;
  real E2_space_7_space_7_space_9 = 0 M;
  real E4_space_2_space_2_space_2 = 0 M;
  real E5_space_1_space_3_space_1 = 0 M;
  real space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate(time) M;
  real space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal(time) M;
  real space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate(time) M;
  real UDP_minus_glucose(time) M;
  real D_minus_Glucose_space_1_minus_phosphate(time) M;
  real Pectate(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real R00289(time) katal;
  extern real R00289.kf;
  extern real R00289.kb;
  real R05605(time) katal;
  extern real R05605.kf;
  extern real R05605.kb;
  real R02361(time) katal;
  extern real R02361.kf;
  extern real R02361.kb;
  real R01529(time) katal;
  extern real R01529.kf;
  extern real R01529.kb;

  // equations
  when (time=time.min) space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate = 0;
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate:time = (-1*R05605)/uVol;
  when (time=time.min) space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal = 0;
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal:time = (R05605)/uVol;
  when (time=time.min) space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate = 0;
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate:time = (R02361)/uVol;
  when (time=time.min) UDP_minus_glucose = 0;
  UDP_minus_glucose:time = (R00289)/uVol;
  when (time=time.min) D_minus_Glucose_space_1_minus_phosphate = 0;
  D_minus_Glucose_space_1_minus_phosphate:time = (-1*R00289)/uVol;
  when (time=time.min) Pectate = 0;
  Pectate:time = (-1*R02361)/uVol;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  D_minus_Xylulose_space_5_minus_phosphate:time = (R01529)/uVol;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  D_minus_Ribulose_space_5_minus_phosphate:time = (-1*R01529)/uVol;
  R00289 = R00289.kf*D_minus_Glucose_space_1_minus_phosphate - R00289.kb*UDP_minus_glucose;
  R05605 = R05605.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate - R05605.kb*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal;
  R02361 = R02361.kf*Pectate - R02361.kb*space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate;
  R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_1_space_2_space_14.sbmlRole="species";
  E4_space_1_space_2_space_14.sbmlCompartment="uVol";
  E2_space_7_space_7_space_9.sbmlRole="species";
  E2_space_7_space_7_space_9.sbmlCompartment="uVol";
  E4_space_2_space_2_space_2.sbmlRole="species";
  E4_space_2_space_2_space_2.sbmlCompartment="uVol";
  E5_space_1_space_3_space_1.sbmlRole="species";
  E5_space_1_space_3_space_1.sbmlCompartment="uVol";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlRole="species";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlCompartment="uVol";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlRole="species";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlCompartment="uVol";
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate.sbmlRole="species";
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate.sbmlCompartment="uVol";
  UDP_minus_glucose.sbmlRole="species";
  UDP_minus_glucose.sbmlCompartment="uVol";
  D_minus_Glucose_space_1_minus_phosphate.sbmlRole="species";
  D_minus_Glucose_space_1_minus_phosphate.sbmlCompartment="uVol";
  Pectate.sbmlRole="species";
  Pectate.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  R00289.sbmlRole="rate";
  R00289.kf.sbmlRole="rate";
  R00289.kb.sbmlRole="rate";
  R05605.sbmlRole="rate";
  R05605.kf.sbmlRole="rate";
  R05605.kb.sbmlRole="rate";
  R02361.sbmlRole="rate";
  R02361.kf.sbmlRole="rate";
  R02361.kb.sbmlRole="rate";
  R01529.sbmlRole="rate";
  R01529.kf.sbmlRole="rate";
  R01529.kb.sbmlRole="rate";
}