// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05660: D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol => space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid 
// R00705: space_3_minus_Oxopropanoate <=> Acetyl_minus_CoA 
// R05661: space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid <=> space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate 
// R01015: space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => Glycerone_space_phosphate 
// R01183: myo_minus_Inositol => space_2_space_4_space_6_space_3_space_5_minus_Pentahydroxycyclohexanone 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_1_space_18 = 0 M;
  real E1_space_minus_space_minus_space_minus_ = 0 M;
  real E2_space_7_space_1_space_92 = 0 M;
  real E5_space_3_space_1_space_1 = 0 M;
  real E1_space_2_space_1_space_27 = 0 M;
  real space_2_space_4_space_6_space_3_space_5_minus_Pentahydroxycyclohexanone(time) M;
  real D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol(time) M;
  real space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid(time) M;
  real space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate(time) M;
  real space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal(time) M;
  real Glycerone_space_phosphate(time) M;
  real space_3_minus_Oxopropanoate(time) M;
  real Acetyl_minus_CoA(time) M;
  real myo_minus_Inositol(time) M;
  real R05660(time) katal;
  extern real R05660.kf;
  extern real R05660.kb;
  real R00705(time) katal;
  extern real R00705.kf;
  extern real R00705.kb;
  real R05661(time) katal;
  extern real R05661.kf;
  extern real R05661.kb;
  real R01015(time) katal;
  extern real R01015.kf;
  extern real R01015.kb;
  real R01183(time) katal;
  extern real R01183.kf;
  extern real R01183.kb;

  // equations
  when (time=time.min) space_2_space_4_space_6_space_3_space_5_minus_Pentahydroxycyclohexanone = 0;
  space_2_space_4_space_6_space_3_space_5_minus_Pentahydroxycyclohexanone:time = (R01183)/uVol;
  when (time=time.min) D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol = 0;
  D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol:time = (-1*R05660)/uVol;
  when (time=time.min) space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid = 0;
  space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid:time = (R05660 + -1*R05661)/uVol;
  when (time=time.min) space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate = 0;
  space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate:time = (R05661)/uVol;
  when (time=time.min) space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal = 0;
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal:time = (-1*R01015)/uVol;
  when (time=time.min) Glycerone_space_phosphate = 0;
  Glycerone_space_phosphate:time = (R01015)/uVol;
  when (time=time.min) space_3_minus_Oxopropanoate = 0;
  space_3_minus_Oxopropanoate:time = (-1*R00705)/uVol;
  when (time=time.min) Acetyl_minus_CoA = 0;
  Acetyl_minus_CoA:time = (R00705)/uVol;
  when (time=time.min) myo_minus_Inositol = 0;
  myo_minus_Inositol:time = (-1*R01183)/uVol;
  R05660 = R05660.kf*D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol - R05660.kb*space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid;
  R00705 = R00705.kf*space_3_minus_Oxopropanoate - R00705.kb*Acetyl_minus_CoA;
  R05661 = R05661.kf*space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid - R05661.kb*space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate;
  R01015 = R01015.kf*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01015.kb*Glycerone_space_phosphate;
  R01183 = R01183.kf*myo_minus_Inositol - R01183.kb*space_2_space_4_space_6_space_3_space_5_minus_Pentahydroxycyclohexanone;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_1_space_18.sbmlRole="species";
  E1_space_1_space_1_space_18.sbmlCompartment="uVol";
  E1_space_minus_space_minus_space_minus_.sbmlRole="species";
  E1_space_minus_space_minus_space_minus_.sbmlCompartment="uVol";
  E2_space_7_space_1_space_92.sbmlRole="species";
  E2_space_7_space_1_space_92.sbmlCompartment="uVol";
  E5_space_3_space_1_space_1.sbmlRole="species";
  E5_space_3_space_1_space_1.sbmlCompartment="uVol";
  E1_space_2_space_1_space_27.sbmlRole="species";
  E1_space_2_space_1_space_27.sbmlCompartment="uVol";
  space_2_space_4_space_6_space_3_space_5_minus_Pentahydroxycyclohexanone.sbmlRole="species";
  space_2_space_4_space_6_space_3_space_5_minus_Pentahydroxycyclohexanone.sbmlCompartment="uVol";
  D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol.sbmlRole="species";
  D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol.sbmlCompartment="uVol";
  space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid.sbmlRole="species";
  space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid.sbmlCompartment="uVol";
  space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate.sbmlRole="species";
  space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate.sbmlCompartment="uVol";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlRole="species";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlCompartment="uVol";
  Glycerone_space_phosphate.sbmlRole="species";
  Glycerone_space_phosphate.sbmlCompartment="uVol";
  space_3_minus_Oxopropanoate.sbmlRole="species";
  space_3_minus_Oxopropanoate.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  myo_minus_Inositol.sbmlRole="species";
  myo_minus_Inositol.sbmlCompartment="uVol";
  R05660.sbmlRole="rate";
  R05660.kf.sbmlRole="rate";
  R05660.kb.sbmlRole="rate";
  R00705.sbmlRole="rate";
  R00705.kf.sbmlRole="rate";
  R00705.kb.sbmlRole="rate";
  R05661.sbmlRole="rate";
  R05661.kf.sbmlRole="rate";
  R05661.kb.sbmlRole="rate";
  R01015.sbmlRole="rate";
  R01015.kf.sbmlRole="rate";
  R01015.kb.sbmlRole="rate";
  R01183.sbmlRole="rate";
  R01183.kf.sbmlRole="rate";
  R01183.kb.sbmlRole="rate";
}