// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00289: D_minus_Glucose_space_1_minus_phosphate <=> UDP_minus_glucose 
// R05605: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate => space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal 
// R00286: UDP_minus_glucose => UDP_minus_glucuronate 
// R01761: L_minus_Arabinose => L_minus_Ribulose 
// R01529: D_minus_Ribulose_space_5_minus_phosphate => D_minus_Xylulose_space_5_minus_phosphate 
// R02439: L_minus_Ribulose => L_minus_Ribulose_space_5_minus_phosphate 
// R05850: L_minus_Ribulose_space_5_minus_phosphate <=> D_minus_Xylulose_space_5_minus_phosphate 
// R01432: D_minus_Xylose => D_minus_Xylulose 
// R01526: D_minus_Ribulose => D_minus_Ribulose_space_5_minus_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_1_space_2_space_14 = 0 M;
  real E5_space_3_space_1_space_5 = 0 M;
  real E1_space_1_space_1_space_22 = 0 M;
  real E2_space_7_space_7_space_9 = 0 M;
  real E5_space_1_space_3_space_1 = 0 M;
  real E2_space_7_space_1_space_16 = 0 M;
  real E5_space_1_space_3_space_4 = 0 M;
  real E5_space_3_space_1_space_4 = 0 M;
  real space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate(time) M;
  real space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal(time) M;
  real D_minus_Xylose(time) M;
  real UDP_minus_glucose(time) M;
  real D_minus_Glucose_space_1_minus_phosphate(time) M;
  real UDP_minus_glucuronate(time) M;
  real D_minus_Xylulose(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real L_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose(time) M;
  real L_minus_Arabinose(time) M;
  real L_minus_Ribulose(time) M;
  real R00289(time) katal;
  extern real R00289.kf;
  extern real R00289.kb;
  real R05605(time) katal;
  extern real R05605.kf;
  extern real R05605.kb;
  real R00286(time) katal;
  extern real R00286.kf;
  extern real R00286.kb;
  real R01761(time) katal;
  extern real R01761.kf;
  extern real R01761.kb;
  real R01529(time) katal;
  extern real R01529.kf;
  extern real R01529.kb;
  real R02439(time) katal;
  extern real R02439.kf;
  extern real R02439.kb;
  real R05850(time) katal;
  extern real R05850.kf;
  extern real R05850.kb;
  real R01432(time) katal;
  extern real R01432.kf;
  extern real R01432.kb;
  real R01526(time) katal;
  extern real R01526.kf;
  extern real R01526.kb;

  // equations
  when (time=time.min) space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate = 0;
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate:time = (-1*R05605)/uVol;
  when (time=time.min) space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal = 0;
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal:time = (R05605)/uVol;
  when (time=time.min) D_minus_Xylose = 0;
  D_minus_Xylose:time = (-1*R01432)/uVol;
  when (time=time.min) UDP_minus_glucose = 0;
  UDP_minus_glucose:time = (R00289 + -1*R00286)/uVol;
  when (time=time.min) D_minus_Glucose_space_1_minus_phosphate = 0;
  D_minus_Glucose_space_1_minus_phosphate:time = (-1*R00289)/uVol;
  when (time=time.min) UDP_minus_glucuronate = 0;
  UDP_minus_glucuronate:time = (R00286)/uVol;
  when (time=time.min) D_minus_Xylulose = 0;
  D_minus_Xylulose:time = (R01432)/uVol;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  D_minus_Xylulose_space_5_minus_phosphate:time = (R01529 + R05850)/uVol;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  D_minus_Ribulose_space_5_minus_phosphate:time = (-1*R01529 + R01526)/uVol;
  when (time=time.min) L_minus_Ribulose_space_5_minus_phosphate = 0;
  L_minus_Ribulose_space_5_minus_phosphate:time = (R02439 + -1*R05850)/uVol;
  when (time=time.min) D_minus_Ribulose = 0;
  D_minus_Ribulose:time = (-1*R01526)/uVol;
  when (time=time.min) L_minus_Arabinose = 0;
  L_minus_Arabinose:time = (-1*R01761)/uVol;
  when (time=time.min) L_minus_Ribulose = 0;
  L_minus_Ribulose:time = (R01761 + -1*R02439)/uVol;
  R00289 = R00289.kf*D_minus_Glucose_space_1_minus_phosphate - R00289.kb*UDP_minus_glucose;
  R05605 = R05605.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate - R05605.kb*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal;
  R00286 = R00286.kf*UDP_minus_glucose - R00286.kb*UDP_minus_glucuronate;
  R01761 = R01761.kf*L_minus_Arabinose - R01761.kb*L_minus_Ribulose;
  R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R02439 = R02439.kf*L_minus_Ribulose - R02439.kb*L_minus_Ribulose_space_5_minus_phosphate;
  R05850 = R05850.kf*L_minus_Ribulose_space_5_minus_phosphate - R05850.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R01432 = R01432.kf*D_minus_Xylose - R01432.kb*D_minus_Xylulose;
  R01526 = R01526.kf*D_minus_Ribulose - R01526.kb*D_minus_Ribulose_space_5_minus_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_1_space_2_space_14.sbmlRole="species";
  E4_space_1_space_2_space_14.sbmlCompartment="uVol";
  E5_space_3_space_1_space_5.sbmlRole="species";
  E5_space_3_space_1_space_5.sbmlCompartment="uVol";
  E1_space_1_space_1_space_22.sbmlRole="species";
  E1_space_1_space_1_space_22.sbmlCompartment="uVol";
  E2_space_7_space_7_space_9.sbmlRole="species";
  E2_space_7_space_7_space_9.sbmlCompartment="uVol";
  E5_space_1_space_3_space_1.sbmlRole="species";
  E5_space_1_space_3_space_1.sbmlCompartment="uVol";
  E2_space_7_space_1_space_16.sbmlRole="species";
  E2_space_7_space_1_space_16.sbmlCompartment="uVol";
  E5_space_1_space_3_space_4.sbmlRole="species";
  E5_space_1_space_3_space_4.sbmlCompartment="uVol";
  E5_space_3_space_1_space_4.sbmlRole="species";
  E5_space_3_space_1_space_4.sbmlCompartment="uVol";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlRole="species";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlCompartment="uVol";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlRole="species";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlCompartment="uVol";
  D_minus_Xylose.sbmlRole="species";
  D_minus_Xylose.sbmlCompartment="uVol";
  UDP_minus_glucose.sbmlRole="species";
  UDP_minus_glucose.sbmlCompartment="uVol";
  D_minus_Glucose_space_1_minus_phosphate.sbmlRole="species";
  D_minus_Glucose_space_1_minus_phosphate.sbmlCompartment="uVol";
  UDP_minus_glucuronate.sbmlRole="species";
  UDP_minus_glucuronate.sbmlCompartment="uVol";
  D_minus_Xylulose.sbmlRole="species";
  D_minus_Xylulose.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  L_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose.sbmlRole="species";
  D_minus_Ribulose.sbmlCompartment="uVol";
  L_minus_Arabinose.sbmlRole="species";
  L_minus_Arabinose.sbmlCompartment="uVol";
  L_minus_Ribulose.sbmlRole="species";
  L_minus_Ribulose.sbmlCompartment="uVol";
  R00289.sbmlRole="rate";
  R00289.kf.sbmlRole="rate";
  R00289.kb.sbmlRole="rate";
  R05605.sbmlRole="rate";
  R05605.kf.sbmlRole="rate";
  R05605.kb.sbmlRole="rate";
  R00286.sbmlRole="rate";
  R00286.kf.sbmlRole="rate";
  R00286.kb.sbmlRole="rate";
  R01761.sbmlRole="rate";
  R01761.kf.sbmlRole="rate";
  R01761.kb.sbmlRole="rate";
  R01529.sbmlRole="rate";
  R01529.kf.sbmlRole="rate";
  R01529.kb.sbmlRole="rate";
  R02439.sbmlRole="rate";
  R02439.kf.sbmlRole="rate";
  R02439.kb.sbmlRole="rate";
  R05850.sbmlRole="rate";
  R05850.kf.sbmlRole="rate";
  R05850.kb.sbmlRole="rate";
  R01432.sbmlRole="rate";
  R01432.kf.sbmlRole="rate";
  R01432.kb.sbmlRole="rate";
  R01526.sbmlRole="rate";
  R01526.kf.sbmlRole="rate";
  R01526.kb.sbmlRole="rate";
}