// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01542: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate => space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate 
// R00289: D_minus_Glucose_space_1_minus_phosphate <=> UDP_minus_glucose 
// R00286: UDP_minus_glucose => UDP_minus_glucuronate 
// R02362: Pectin <=> Pectate 
// R01529: D_minus_Ribulose_space_5_minus_phosphate => D_minus_Xylulose_space_5_minus_phosphate 
// R01982: Pectate <=> D_minus_Galacturonate 
// R01639: D_minus_Xylulose => D_minus_Xylulose_space_5_minus_phosphate 
// R02361: Pectate <=> space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate 
// R02360: Pectate <=> Digalacturonate 
// R01478: beta_minus_D_minus_Glucuronoside <=> D_minus_Glucuronate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_1_space_22 = 0 M;
  real E2_space_7_space_7_space_9 = 0 M;
  real E4_space_2_space_2_space_2 = 0 M;
  real E3_space_1_space_1_space_11 = 0 M;
  real E2_space_7_space_1_space_17 = 0 M;
  real E3_space_2_space_1_space_15 = 0 M;
  real E3_space_2_space_1_space_31 = 0 M;
  real E5_space_1_space_3_space_1 = 0 M;
  real E1_space_1_space_1_space_125 = 0 M;
  real space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate(time) M;
  real space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate(time) M;
  real UDP_minus_glucose(time) M;
  real D_minus_Glucose_space_1_minus_phosphate(time) M;
  real UDP_minus_glucuronate(time) M;
  real D_minus_Xylulose(time) M;
  real Pectate(time) M;
  real Digalacturonate(time) M;
  real D_minus_Galacturonate(time) M;
  real Pectin(time) M;
  real beta_minus_D_minus_Glucuronoside(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Glucuronate(time) M;
  real space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate(time) M;
  real R01542(time) katal;
  extern real R01542.kf;
  extern real R01542.kb;
  real R00289(time) katal;
  extern real R00289.kf;
  extern real R00289.kb;
  real R00286(time) katal;
  extern real R00286.kf;
  extern real R00286.kb;
  real R02362(time) katal;
  extern real R02362.kf;
  extern real R02362.kb;
  real R01529(time) katal;
  extern real R01529.kf;
  extern real R01529.kb;
  real R01982(time) katal;
  extern real R01982.kf;
  extern real R01982.kb;
  real R01639(time) katal;
  extern real R01639.kf;
  extern real R01639.kb;
  real R02361(time) katal;
  extern real R02361.kf;
  extern real R02361.kb;
  real R02360(time) katal;
  extern real R02360.kf;
  extern real R02360.kb;
  real R01478(time) katal;
  extern real R01478.kf;
  extern real R01478.kb;

  // equations
  when (time=time.min) space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate = 0;
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate:time = (-1*R01542)/uVol;
  when (time=time.min) space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate = 0;
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate:time = (R02361)/uVol;
  when (time=time.min) UDP_minus_glucose = 0;
  UDP_minus_glucose:time = (R00289 + -1*R00286)/uVol;
  when (time=time.min) D_minus_Glucose_space_1_minus_phosphate = 0;
  D_minus_Glucose_space_1_minus_phosphate:time = (-1*R00289)/uVol;
  when (time=time.min) UDP_minus_glucuronate = 0;
  UDP_minus_glucuronate:time = (R00286)/uVol;
  when (time=time.min) D_minus_Xylulose = 0;
  D_minus_Xylulose:time = (-1*R01639)/uVol;
  when (time=time.min) Pectate = 0;
  Pectate:time = (R02362 + -1*R01982 + -1*R02361 + -1*R02360)/uVol;
  when (time=time.min) Digalacturonate = 0;
  Digalacturonate:time = (R02360)/uVol;
  when (time=time.min) D_minus_Galacturonate = 0;
  D_minus_Galacturonate:time = (R01982)/uVol;
  when (time=time.min) Pectin = 0;
  Pectin:time = (-1*R02362)/uVol;
  when (time=time.min) beta_minus_D_minus_Glucuronoside = 0;
  beta_minus_D_minus_Glucuronoside:time = (-1*R01478)/uVol;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  D_minus_Xylulose_space_5_minus_phosphate:time = (R01529 + R01639)/uVol;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  D_minus_Ribulose_space_5_minus_phosphate:time = (-1*R01529)/uVol;
  when (time=time.min) D_minus_Glucuronate = 0;
  D_minus_Glucuronate:time = (R01478)/uVol;
  when (time=time.min) space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate = 0;
  space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate:time = (R01542)/uVol;
  R01542 = R01542.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate - R01542.kb*space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate;
  R00289 = R00289.kf*D_minus_Glucose_space_1_minus_phosphate - R00289.kb*UDP_minus_glucose;
  R00286 = R00286.kf*UDP_minus_glucose - R00286.kb*UDP_minus_glucuronate;
  R02362 = R02362.kf*Pectin - R02362.kb*Pectate;
  R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R01982 = R01982.kf*Pectate - R01982.kb*D_minus_Galacturonate;
  R01639 = R01639.kf*D_minus_Xylulose - R01639.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R02361 = R02361.kf*Pectate - R02361.kb*space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate;
  R02360 = R02360.kf*Pectate - R02360.kb*Digalacturonate;
  R01478 = R01478.kf*beta_minus_D_minus_Glucuronoside - R01478.kb*D_minus_Glucuronate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_1_space_22.sbmlRole="species";
  E1_space_1_space_1_space_22.sbmlCompartment="uVol";
  E2_space_7_space_7_space_9.sbmlRole="species";
  E2_space_7_space_7_space_9.sbmlCompartment="uVol";
  E4_space_2_space_2_space_2.sbmlRole="species";
  E4_space_2_space_2_space_2.sbmlCompartment="uVol";
  E3_space_1_space_1_space_11.sbmlRole="species";
  E3_space_1_space_1_space_11.sbmlCompartment="uVol";
  E2_space_7_space_1_space_17.sbmlRole="species";
  E2_space_7_space_1_space_17.sbmlCompartment="uVol";
  E3_space_2_space_1_space_15.sbmlRole="species";
  E3_space_2_space_1_space_15.sbmlCompartment="uVol";
  E3_space_2_space_1_space_31.sbmlRole="species";
  E3_space_2_space_1_space_31.sbmlCompartment="uVol";
  E5_space_1_space_3_space_1.sbmlRole="species";
  E5_space_1_space_3_space_1.sbmlCompartment="uVol";
  E1_space_1_space_1_space_125.sbmlRole="species";
  E1_space_1_space_1_space_125.sbmlCompartment="uVol";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate.sbmlRole="species";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate.sbmlCompartment="uVol";
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate.sbmlRole="species";
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate.sbmlCompartment="uVol";
  UDP_minus_glucose.sbmlRole="species";
  UDP_minus_glucose.sbmlCompartment="uVol";
  D_minus_Glucose_space_1_minus_phosphate.sbmlRole="species";
  D_minus_Glucose_space_1_minus_phosphate.sbmlCompartment="uVol";
  UDP_minus_glucuronate.sbmlRole="species";
  UDP_minus_glucuronate.sbmlCompartment="uVol";
  D_minus_Xylulose.sbmlRole="species";
  D_minus_Xylulose.sbmlCompartment="uVol";
  Pectate.sbmlRole="species";
  Pectate.sbmlCompartment="uVol";
  Digalacturonate.sbmlRole="species";
  Digalacturonate.sbmlCompartment="uVol";
  D_minus_Galacturonate.sbmlRole="species";
  D_minus_Galacturonate.sbmlCompartment="uVol";
  Pectin.sbmlRole="species";
  Pectin.sbmlCompartment="uVol";
  beta_minus_D_minus_Glucuronoside.sbmlRole="species";
  beta_minus_D_minus_Glucuronoside.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Glucuronate.sbmlRole="species";
  D_minus_Glucuronate.sbmlCompartment="uVol";
  space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate.sbmlRole="species";
  space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate.sbmlCompartment="uVol";
  R01542.sbmlRole="rate";
  R01542.kf.sbmlRole="rate";
  R01542.kb.sbmlRole="rate";
  R00289.sbmlRole="rate";
  R00289.kf.sbmlRole="rate";
  R00289.kb.sbmlRole="rate";
  R00286.sbmlRole="rate";
  R00286.kf.sbmlRole="rate";
  R00286.kb.sbmlRole="rate";
  R02362.sbmlRole="rate";
  R02362.kf.sbmlRole="rate";
  R02362.kb.sbmlRole="rate";
  R01529.sbmlRole="rate";
  R01529.kf.sbmlRole="rate";
  R01529.kb.sbmlRole="rate";
  R01982.sbmlRole="rate";
  R01982.kf.sbmlRole="rate";
  R01982.kb.sbmlRole="rate";
  R01639.sbmlRole="rate";
  R01639.kf.sbmlRole="rate";
  R01639.kb.sbmlRole="rate";
  R02361.sbmlRole="rate";
  R02361.kf.sbmlRole="rate";
  R02361.kb.sbmlRole="rate";
  R02360.sbmlRole="rate";
  R02360.kf.sbmlRole="rate";
  R02360.kb.sbmlRole="rate";
  R01478.sbmlRole="rate";
  R01478.kf.sbmlRole="rate";
  R01478.kb.sbmlRole="rate";
}