// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00551: L_minus_Arginine <=> L_minus_Ornithine Urea 
// R00131: Urea <=> CO2 
// R01398: Carbamoyl_space_phosphate L_minus_Ornithine <=> L_minus_Citrulline 
// R00259: L_minus_Glutamate <=> N_minus_Acetyl_minus_L_minus_glutamate 
// R04025: N_minus_Acetylputrescine <=> N4_minus_Acetylaminobutanal 
// R01954: L_minus_Citrulline L_minus_Aspartate <=> N_minus_space_L_minus_Arginino_space_succinate 
// R00239: L_minus_Glutamate <=> L_minus_Glutamyl_space_5_minus_phosphate 
// R01157: Agmatine <=> Putrescine 
// R03180: space_4_minus_Guanidinobutanamide <=> space_4_minus_Guanidinobutanoate 
// R02283: N_minus_Acetylornithine => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde 
// R01986: space_4_minus_Aminobutanal <=> space_4_minus_Aminobutanoate 
// R03443: N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate 
// R01920: Putrescine S_minus_Adenosylmethioninamine <=> Spermidine 
// R00669: N_minus_Acetylornithine <=> L_minus_Ornithine 
// R00178: S_minus_Adenosyl_minus_L_minus_methionine <=> S_minus_Adenosylmethioninamine CO2 
// R05050: N4_minus_Acetylaminobutanal <=> space_4_minus_Acetamidobutanoate 
// R01151: Putrescine => space_4_minus_Aminobutanal 
// R00670: L_minus_Ornithine <=> Putrescine 
// R01086: N_minus_space_L_minus_Arginino_space_succinate <=> Fumarate L_minus_Arginine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_2_space_11 = 0 M;
  real E2_space_3_space_1_space_1 = 0 M;
  real E2_space_6_space_1_space_11 = 0 M;
  real E3_space_5_space_1_space_16 = 0 M;
  real E2_space_1_space_3_space_3 = 0 M;
  real E1_space_4_space_3_space_4 = 0 M;
  real E1_space_2_space_1_space_3 = 0 M;
  real E6_space_3_space_4_space_5 = 0 M;
  real E4_space_1_space_1_space_17 = 0 M;
  real E3_space_5_space_3_space_1 = 0 M;
  real E4_space_3_space_2_space_1 = 0 M;
  real E1_space_4_space_3_space_6 = 0 M;
  real E3_space_5_space_3_space_11 = 0 M;
  real E2_space_5_space_1_space_16 = 0 M;
  real E3_space_5_space_1_space_5 = 0 M;
  real E4_space_1_space_1_space_50 = 0 M;
  real E1_space_2_space_1_space_38 = 0 M;
  real E3_space_5_space_1_space_4 = 0 M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate(time) M;
  real L_minus_Glutamyl_space_5_minus_phosphate(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate(time) M;
  real L_minus_Glutamate(time) M;
  real Carbamoyl_space_phosphate(time) M;
  real N_minus_Acetylornithine(time) M;
  real L_minus_Aspartate(time) M;
  real L_minus_Citrulline(time) M;
  real N_minus_Acetylputrescine(time) M;
  real N4_minus_Acetylaminobutanal(time) M;
  real space_4_minus_Acetamidobutanoate(time) M;
  real L_minus_Ornithine(time) M;
  real N_minus_space_L_minus_Arginino_space_succinate(time) M;
  real Putrescine(time) M;
  real space_4_minus_Aminobutanal(time) M;
  real space_4_minus_Aminobutanoate(time) M;
  real L_minus_Arginine(time) M;
  real Urea(time) M;
  real Fumarate(time) M;
  real Spermidine(time) M;
  real S_minus_Adenosylmethioninamine(time) M;
  real CO2(time) M;
  real S_minus_Adenosyl_minus_L_minus_methionine(time) M;
  real Agmatine(time) M;
  real space_4_minus_Guanidinobutanamide(time) M;
  real space_4_minus_Guanidinobutanoate(time) M;
  real R00551(time) katal;
  extern real R00551.kf;
  extern real R00551.kb;
  real R00131(time) katal;
  extern real R00131.kf;
  extern real R00131.kb;
  real R01398(time) katal;
  extern real R01398.kf;
  extern real R01398.kb;
  real R00259(time) katal;
  extern real R00259.kf;
  extern real R00259.kb;
  real R04025(time) katal;
  extern real R04025.kf;
  extern real R04025.kb;
  real R01954(time) katal;
  extern real R01954.kf;
  extern real R01954.kb;
  real R00239(time) katal;
  extern real R00239.kf;
  extern real R00239.kb;
  real R01157(time) katal;
  extern real R01157.kf;
  extern real R01157.kb;
  real R03180(time) katal;
  extern real R03180.kf;
  extern real R03180.kb;
  real R02283(time) katal;
  extern real R02283.kf;
  extern real R02283.kb;
  real R01986(time) katal;
  extern real R01986.kf;
  extern real R01986.kb;
  real R03443(time) katal;
  extern real R03443.kf;
  extern real R03443.kb;
  real R01920(time) katal;
  extern real R01920.kf;
  extern real R01920.kb;
  real R00669(time) katal;
  extern real R00669.kf;
  extern real R00669.kb;
  real R00178(time) katal;
  extern real R00178.kf;
  extern real R00178.kb;
  real R05050(time) katal;
  extern real R05050.kf;
  extern real R05050.kb;
  real R01151(time) katal;
  extern real R01151.kf;
  extern real R01151.kb;
  real R00670(time) katal;
  extern real R00670.kf;
  extern real R00670.kb;
  real R01086(time) katal;
  extern real R01086.kf;
  extern real R01086.kb;

  // equations
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate:time = (R03443)/uVol;
  when (time=time.min) L_minus_Glutamyl_space_5_minus_phosphate = 0;
  L_minus_Glutamyl_space_5_minus_phosphate:time = (R00239)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde:time = (R02283 + -1*R03443)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate:time = (R00259)/uVol;
  when (time=time.min) L_minus_Glutamate = 0;
  L_minus_Glutamate:time = (-1*R00259 + -1*R00239)/uVol;
  when (time=time.min) Carbamoyl_space_phosphate = 0;
  Carbamoyl_space_phosphate:time = (-1*R01398)/uVol;
  when (time=time.min) N_minus_Acetylornithine = 0;
  N_minus_Acetylornithine:time = (-1*R02283 + -1*R00669)/uVol;
  when (time=time.min) L_minus_Aspartate = 0;
  L_minus_Aspartate:time = (-1*R01954)/uVol;
  when (time=time.min) L_minus_Citrulline = 0;
  L_minus_Citrulline:time = (R01398 + -1*R01954)/uVol;
  when (time=time.min) N_minus_Acetylputrescine = 0;
  N_minus_Acetylputrescine:time = (-1*R04025)/uVol;
  when (time=time.min) N4_minus_Acetylaminobutanal = 0;
  N4_minus_Acetylaminobutanal:time = (R04025 + -1*R05050)/uVol;
  when (time=time.min) space_4_minus_Acetamidobutanoate = 0;
  space_4_minus_Acetamidobutanoate:time = (R05050)/uVol;
  when (time=time.min) L_minus_Ornithine = 0;
  L_minus_Ornithine:time = (R00551 + -1*R01398 + R00669 + -1*R00670)/uVol;
  when (time=time.min) N_minus_space_L_minus_Arginino_space_succinate = 0;
  N_minus_space_L_minus_Arginino_space_succinate:time = (R01954 + -1*R01086)/uVol;
  when (time=time.min) Putrescine = 0;
  Putrescine:time = (R01157 + -1*R01920 + -1*R01151 + R00670)/uVol;
  when (time=time.min) space_4_minus_Aminobutanal = 0;
  space_4_minus_Aminobutanal:time = (-1*R01986 + R01151)/uVol;
  when (time=time.min) space_4_minus_Aminobutanoate = 0;
  space_4_minus_Aminobutanoate:time = (R01986)/uVol;
  when (time=time.min) L_minus_Arginine = 0;
  L_minus_Arginine:time = (-1*R00551 + R01086)/uVol;
  when (time=time.min) Urea = 0;
  Urea:time = (R00551 + -1*R00131)/uVol;
  when (time=time.min) Fumarate = 0;
  Fumarate:time = (R01086)/uVol;
  when (time=time.min) Spermidine = 0;
  Spermidine:time = (R01920)/uVol;
  when (time=time.min) S_minus_Adenosylmethioninamine = 0;
  S_minus_Adenosylmethioninamine:time = (-1*R01920 + R00178)/uVol;
  when (time=time.min) CO2 = 0;
  CO2:time = (R00131 + R00178)/uVol;
  when (time=time.min) S_minus_Adenosyl_minus_L_minus_methionine = 0;
  S_minus_Adenosyl_minus_L_minus_methionine:time = (-1*R00178)/uVol;
  when (time=time.min) Agmatine = 0;
  Agmatine:time = (-1*R01157)/uVol;
  when (time=time.min) space_4_minus_Guanidinobutanamide = 0;
  space_4_minus_Guanidinobutanamide:time = (-1*R03180)/uVol;
  when (time=time.min) space_4_minus_Guanidinobutanoate = 0;
  space_4_minus_Guanidinobutanoate:time = (R03180)/uVol;
  R00551 = R00551.kf*L_minus_Arginine - R00551.kb*L_minus_Ornithine*Urea;
  R00131 = R00131.kf*Urea - R00131.kb*CO2;
  R01398 = R01398.kf*Carbamoyl_space_phosphate*L_minus_Ornithine - R01398.kb*L_minus_Citrulline;
  R00259 = R00259.kf*L_minus_Glutamate - R00259.kb*N_minus_Acetyl_minus_L_minus_glutamate;
  R04025 = R04025.kf*N_minus_Acetylputrescine - R04025.kb*N4_minus_Acetylaminobutanal;
  R01954 = R01954.kf*L_minus_Citrulline*L_minus_Aspartate - R01954.kb*N_minus_space_L_minus_Arginino_space_succinate;
  R00239 = R00239.kf*L_minus_Glutamate - R00239.kb*L_minus_Glutamyl_space_5_minus_phosphate;
  R01157 = R01157.kf*Agmatine - R01157.kb*Putrescine;
  R03180 = R03180.kf*space_4_minus_Guanidinobutanamide - R03180.kb*space_4_minus_Guanidinobutanoate;
  R02283 = R02283.kf*N_minus_Acetylornithine - R02283.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde;
  R01986 = R01986.kf*space_4_minus_Aminobutanal - R01986.kb*space_4_minus_Aminobutanoate;
  R03443 = R03443.kf*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde - R03443.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate;
  R01920 = R01920.kf*Putrescine*S_minus_Adenosylmethioninamine - R01920.kb*Spermidine;
  R00669 = R00669.kf*N_minus_Acetylornithine - R00669.kb*L_minus_Ornithine;
  R00178 = R00178.kf*S_minus_Adenosyl_minus_L_minus_methionine - R00178.kb*S_minus_Adenosylmethioninamine*CO2;
  R05050 = R05050.kf*N4_minus_Acetylaminobutanal - R05050.kb*space_4_minus_Acetamidobutanoate;
  R01151 = R01151.kf*Putrescine - R01151.kb*space_4_minus_Aminobutanal;
  R00670 = R00670.kf*L_minus_Ornithine - R00670.kb*Putrescine;
  R01086 = R01086.kf*N_minus_space_L_minus_Arginino_space_succinate - R01086.kb*Fumarate*L_minus_Arginine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_2_space_11.sbmlRole="species";
  E2_space_7_space_2_space_11.sbmlCompartment="uVol";
  E2_space_3_space_1_space_1.sbmlRole="species";
  E2_space_3_space_1_space_1.sbmlCompartment="uVol";
  E2_space_6_space_1_space_11.sbmlRole="species";
  E2_space_6_space_1_space_11.sbmlCompartment="uVol";
  E3_space_5_space_1_space_16.sbmlRole="species";
  E3_space_5_space_1_space_16.sbmlCompartment="uVol";
  E2_space_1_space_3_space_3.sbmlRole="species";
  E2_space_1_space_3_space_3.sbmlCompartment="uVol";
  E1_space_4_space_3_space_4.sbmlRole="species";
  E1_space_4_space_3_space_4.sbmlCompartment="uVol";
  E1_space_2_space_1_space_3.sbmlRole="species";
  E1_space_2_space_1_space_3.sbmlCompartment="uVol";
  E6_space_3_space_4_space_5.sbmlRole="species";
  E6_space_3_space_4_space_5.sbmlCompartment="uVol";
  E4_space_1_space_1_space_17.sbmlRole="species";
  E4_space_1_space_1_space_17.sbmlCompartment="uVol";
  E3_space_5_space_3_space_1.sbmlRole="species";
  E3_space_5_space_3_space_1.sbmlCompartment="uVol";
  E4_space_3_space_2_space_1.sbmlRole="species";
  E4_space_3_space_2_space_1.sbmlCompartment="uVol";
  E1_space_4_space_3_space_6.sbmlRole="species";
  E1_space_4_space_3_space_6.sbmlCompartment="uVol";
  E3_space_5_space_3_space_11.sbmlRole="species";
  E3_space_5_space_3_space_11.sbmlCompartment="uVol";
  E2_space_5_space_1_space_16.sbmlRole="species";
  E2_space_5_space_1_space_16.sbmlCompartment="uVol";
  E3_space_5_space_1_space_5.sbmlRole="species";
  E3_space_5_space_1_space_5.sbmlCompartment="uVol";
  E4_space_1_space_1_space_50.sbmlRole="species";
  E4_space_1_space_1_space_50.sbmlCompartment="uVol";
  E1_space_2_space_1_space_38.sbmlRole="species";
  E1_space_2_space_1_space_38.sbmlCompartment="uVol";
  E3_space_5_space_1_space_4.sbmlRole="species";
  E3_space_5_space_1_space_4.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Glutamyl_space_5_minus_phosphate.sbmlRole="species";
  L_minus_Glutamyl_space_5_minus_phosphate.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlCompartment="uVol";
  L_minus_Glutamate.sbmlRole="species";
  L_minus_Glutamate.sbmlCompartment="uVol";
  Carbamoyl_space_phosphate.sbmlRole="species";
  Carbamoyl_space_phosphate.sbmlCompartment="uVol";
  N_minus_Acetylornithine.sbmlRole="species";
  N_minus_Acetylornithine.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  L_minus_Citrulline.sbmlRole="species";
  L_minus_Citrulline.sbmlCompartment="uVol";
  N_minus_Acetylputrescine.sbmlRole="species";
  N_minus_Acetylputrescine.sbmlCompartment="uVol";
  N4_minus_Acetylaminobutanal.sbmlRole="species";
  N4_minus_Acetylaminobutanal.sbmlCompartment="uVol";
  space_4_minus_Acetamidobutanoate.sbmlRole="species";
  space_4_minus_Acetamidobutanoate.sbmlCompartment="uVol";
  L_minus_Ornithine.sbmlRole="species";
  L_minus_Ornithine.sbmlCompartment="uVol";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlRole="species";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlCompartment="uVol";
  Putrescine.sbmlRole="species";
  Putrescine.sbmlCompartment="uVol";
  space_4_minus_Aminobutanal.sbmlRole="species";
  space_4_minus_Aminobutanal.sbmlCompartment="uVol";
  space_4_minus_Aminobutanoate.sbmlRole="species";
  space_4_minus_Aminobutanoate.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  Urea.sbmlRole="species";
  Urea.sbmlCompartment="uVol";
  Fumarate.sbmlRole="species";
  Fumarate.sbmlCompartment="uVol";
  Spermidine.sbmlRole="species";
  Spermidine.sbmlCompartment="uVol";
  S_minus_Adenosylmethioninamine.sbmlRole="species";
  S_minus_Adenosylmethioninamine.sbmlCompartment="uVol";
  CO2.sbmlRole="species";
  CO2.sbmlCompartment="uVol";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlRole="species";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlCompartment="uVol";
  Agmatine.sbmlRole="species";
  Agmatine.sbmlCompartment="uVol";
  space_4_minus_Guanidinobutanamide.sbmlRole="species";
  space_4_minus_Guanidinobutanamide.sbmlCompartment="uVol";
  space_4_minus_Guanidinobutanoate.sbmlRole="species";
  space_4_minus_Guanidinobutanoate.sbmlCompartment="uVol";
  R00551.sbmlRole="rate";
  R00551.kf.sbmlRole="rate";
  R00551.kb.sbmlRole="rate";
  R00131.sbmlRole="rate";
  R00131.kf.sbmlRole="rate";
  R00131.kb.sbmlRole="rate";
  R01398.sbmlRole="rate";
  R01398.kf.sbmlRole="rate";
  R01398.kb.sbmlRole="rate";
  R00259.sbmlRole="rate";
  R00259.kf.sbmlRole="rate";
  R00259.kb.sbmlRole="rate";
  R04025.sbmlRole="rate";
  R04025.kf.sbmlRole="rate";
  R04025.kb.sbmlRole="rate";
  R01954.sbmlRole="rate";
  R01954.kf.sbmlRole="rate";
  R01954.kb.sbmlRole="rate";
  R00239.sbmlRole="rate";
  R00239.kf.sbmlRole="rate";
  R00239.kb.sbmlRole="rate";
  R01157.sbmlRole="rate";
  R01157.kf.sbmlRole="rate";
  R01157.kb.sbmlRole="rate";
  R03180.sbmlRole="rate";
  R03180.kf.sbmlRole="rate";
  R03180.kb.sbmlRole="rate";
  R02283.sbmlRole="rate";
  R02283.kf.sbmlRole="rate";
  R02283.kb.sbmlRole="rate";
  R01986.sbmlRole="rate";
  R01986.kf.sbmlRole="rate";
  R01986.kb.sbmlRole="rate";
  R03443.sbmlRole="rate";
  R03443.kf.sbmlRole="rate";
  R03443.kb.sbmlRole="rate";
  R01920.sbmlRole="rate";
  R01920.kf.sbmlRole="rate";
  R01920.kb.sbmlRole="rate";
  R00669.sbmlRole="rate";
  R00669.kf.sbmlRole="rate";
  R00669.kb.sbmlRole="rate";
  R00178.sbmlRole="rate";
  R00178.kf.sbmlRole="rate";
  R00178.kb.sbmlRole="rate";
  R05050.sbmlRole="rate";
  R05050.kf.sbmlRole="rate";
  R05050.kb.sbmlRole="rate";
  R01151.sbmlRole="rate";
  R01151.kf.sbmlRole="rate";
  R01151.kb.sbmlRole="rate";
  R00670.sbmlRole="rate";
  R00670.kf.sbmlRole="rate";
  R00670.kb.sbmlRole="rate";
  R01086.sbmlRole="rate";
  R01086.kf.sbmlRole="rate";
  R01086.kb.sbmlRole="rate";
}