// This model generated automatically from SBML // unit definitions import nsrunit; unit conversion off; // SBML property definitions property sbmlRole=string; property sbmlName=string; property sbmlCompartment=string; // SBML reactions // R01737: D_minus_Gluconic_space_acid <=> space_6_minus_Phospho_minus_D_minus_gluconate // R02750: Deoxyribose => space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate // R01051: D_minus_Ribose => D_minus_Ribose_space_5_minus_phosphate // R01056: D_minus_Ribose_space_5_minus_phosphate => D_minus_Ribulose_space_5_minus_phosphate // R01830: beta_minus_D_minus_Fructose_space_6_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Erythrose_space_4_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate // R04779: beta_minus_D_minus_Fructose_space_6_minus_phosphate <=> beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate // R01519: D_minus_Glucono_minus_1_space_5_minus_lactone <=> D_minus_Gluconic_space_acid // R02035: D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate => space_6_minus_Phospho_minus_D_minus_gluconate // R02740: alpha_minus_D_minus_Glucose_space_6_minus_phosphate => beta_minus_D_minus_Fructose_space_6_minus_phosphate // R01528: space_6_minus_Phospho_minus_D_minus_gluconate <=> D_minus_Ribulose_space_5_minus_phosphate CO2 // R01057: alpha_minus_D_minus_Ribose_space_1_minus_phosphate => D_minus_Ribose_space_5_minus_phosphate // R01827: D_minus_Sedoheptulose_space_7_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Erythrose_space_4_minus_phosphate D_minus_Fructose_space_6_minus_phosphate // R01070: beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate => space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal // R02739: alpha_minus_D_minus_Glucose_space_6_minus_phosphate => beta_minus_D_minus_Glucose_space_6_minus_phosphate // R01641: D_minus_Sedoheptulose_space_7_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Ribose_space_5_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate // R01529: D_minus_Ribulose_space_5_minus_phosphate => D_minus_Xylulose_space_5_minus_phosphate // R02736: beta_minus_D_minus_Glucose_space_6_minus_phosphate <=> D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate // R04780: beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate <=> beta_minus_D_minus_Fructose_space_6_minus_phosphate // R01049: D_minus_Ribose_space_5_minus_phosphate => space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate math main { realDomain time second; time.min=0; extern time.max; extern time.delta; // variable definitions real default = 1 L; real uVol = 1 L; real E5_space_3_space_1_space_9 = 0 M; real E2_space_7_space_1_space_15 = 0 M; real E3_space_1_space_3_space_11 = 0 M; real E2_space_7_space_1_space_11 = 0 M; real E4_space_1_space_2_space_13 = 0 M; real E3_space_1_space_1_space_17 = 0 M; real E1_space_1_space_1_space_49 = 0 M; real E2_space_7_space_1_space_12 = 0 M; real E2_space_2_space_1_space_1 = 0 M; real E3_space_1_space_1_space_31 = 0 M; real E1_space_1_space_1_space_44 = 0 M; real E2_space_2_space_1_space_2 = 0 M; real E5_space_1_space_3_space_1 = 0 M; real E5_space_3_space_1_space_6 = 0 M; real E2_space_7_space_6_space_1 = 0 M; real E5_space_4_space_2_space_2 = 0 M; real Deoxyribose(time) M; real alpha_minus_D_minus_Glucose_space_6_minus_phosphate(time) M; real D_minus_Glucono_minus_1_space_5_minus_lactone(time) M; real beta_minus_D_minus_Glucose_space_6_minus_phosphate(time) M; real beta_minus_D_minus_Fructose_space_6_minus_phosphate(time) M; real beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate(time) M; real space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal(time) M; real space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate(time) M; real D_minus_Gluconic_space_acid(time) M; real D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate(time) M; real D_minus_Fructose_space_6_minus_phosphate(time) M; real space_6_minus_Phospho_minus_D_minus_gluconate(time) M; real D_minus_Erythrose_space_4_minus_phosphate(time) M; real CO2(time) M; real D_minus_Ribulose_space_5_minus_phosphate(time) M; real D_minus_Xylulose_space_5_minus_phosphate(time) M; real D_minus_Ribose_space_5_minus_phosphate(time) M; real D_minus_Sedoheptulose_space_7_minus_phosphate(time) M; real D_minus_Ribose(time) M; real alpha_minus_D_minus_Ribose_space_1_minus_phosphate(time) M; real space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate(time) M; real R01737(time) katal; extern real R01737.kf; extern real R01737.kb; real R02750(time) katal; extern real R02750.kf; extern real R02750.kb; real R01051(time) katal; extern real R01051.kf; extern real R01051.kb; real R01056(time) katal; extern real R01056.kf; extern real R01056.kb; real R01830(time) katal; extern real R01830.kf; extern real R01830.kb; real R04779(time) katal; extern real R04779.kf; extern real R04779.kb; real R01519(time) katal; extern real R01519.kf; extern real R01519.kb; real R02035(time) katal; extern real R02035.kf; extern real R02035.kb; real R02740(time) katal; extern real R02740.kf; extern real R02740.kb; real R01528(time) katal; extern real R01528.kf; extern real R01528.kb; real R01057(time) katal; extern real R01057.kf; extern real R01057.kb; real R01827(time) katal; extern real R01827.kf; extern real R01827.kb; real R01070(time) katal; extern real R01070.kf; extern real R01070.kb; real R02739(time) katal; extern real R02739.kf; extern real R02739.kb; real R01641(time) katal; extern real R01641.kf; extern real R01641.kb; real R01529(time) katal; extern real R01529.kf; extern real R01529.kb; real R02736(time) katal; extern real R02736.kf; extern real R02736.kb; real R04780(time) katal; extern real R04780.kf; extern real R04780.kb; real R01049(time) katal; extern real R01049.kf; extern real R01049.kb; // equations when (time=time.min) Deoxyribose = 0; Deoxyribose:time = (-1*R02750)/uVol; when (time=time.min) alpha_minus_D_minus_Glucose_space_6_minus_phosphate = 0; alpha_minus_D_minus_Glucose_space_6_minus_phosphate:time = (-1*R02740 + -1*R02739)/uVol; when (time=time.min) D_minus_Glucono_minus_1_space_5_minus_lactone = 0; D_minus_Glucono_minus_1_space_5_minus_lactone:time = (-1*R01519)/uVol; when (time=time.min) beta_minus_D_minus_Glucose_space_6_minus_phosphate = 0; beta_minus_D_minus_Glucose_space_6_minus_phosphate:time = (R02739 + -1*R02736)/uVol; when (time=time.min) beta_minus_D_minus_Fructose_space_6_minus_phosphate = 0; beta_minus_D_minus_Fructose_space_6_minus_phosphate:time = (-1*R01830 + -1*R04779 + R02740 + R04780)/uVol; when (time=time.min) beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate = 0; beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate:time = (R04779 + -1*R01070 + -1*R04780)/uVol; when (time=time.min) space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal = 0; space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal:time = (-1*R01830 + -1*R01827 + R01070 + -1*R01641)/uVol; when (time=time.min) space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate = 0; space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate:time = (R02750)/uVol; when (time=time.min) D_minus_Gluconic_space_acid = 0; D_minus_Gluconic_space_acid:time = (-1*R01737 + R01519)/uVol; when (time=time.min) D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate = 0; D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate:time = (-1*R02035 + R02736)/uVol; when (time=time.min) D_minus_Fructose_space_6_minus_phosphate = 0; D_minus_Fructose_space_6_minus_phosphate:time = (R01827)/uVol; when (time=time.min) space_6_minus_Phospho_minus_D_minus_gluconate = 0; space_6_minus_Phospho_minus_D_minus_gluconate:time = (R01737 + R02035 + -1*R01528)/uVol; when (time=time.min) D_minus_Erythrose_space_4_minus_phosphate = 0; D_minus_Erythrose_space_4_minus_phosphate:time = (R01830 + R01827)/uVol; when (time=time.min) CO2 = 0; CO2:time = (R01528)/uVol; when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0; D_minus_Ribulose_space_5_minus_phosphate:time = (R01056 + R01528 + -1*R01529)/uVol; when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0; D_minus_Xylulose_space_5_minus_phosphate:time = (R01830 + R01641 + R01529)/uVol; when (time=time.min) D_minus_Ribose_space_5_minus_phosphate = 0; D_minus_Ribose_space_5_minus_phosphate:time = (R01051 + -1*R01056 + R01057 + R01641 + -1*R01049)/uVol; when (time=time.min) D_minus_Sedoheptulose_space_7_minus_phosphate = 0; D_minus_Sedoheptulose_space_7_minus_phosphate:time = (-1*R01827 + -1*R01641)/uVol; when (time=time.min) D_minus_Ribose = 0; D_minus_Ribose:time = (-1*R01051)/uVol; when (time=time.min) alpha_minus_D_minus_Ribose_space_1_minus_phosphate = 0; alpha_minus_D_minus_Ribose_space_1_minus_phosphate:time = (-1*R01057)/uVol; when (time=time.min) space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate = 0; space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate:time = (R01049)/uVol; R01737 = R01737.kf*D_minus_Gluconic_space_acid - R01737.kb*space_6_minus_Phospho_minus_D_minus_gluconate; R02750 = R02750.kf*Deoxyribose - R02750.kb*space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate; R01051 = R01051.kf*D_minus_Ribose - R01051.kb*D_minus_Ribose_space_5_minus_phosphate; R01056 = R01056.kf*D_minus_Ribose_space_5_minus_phosphate - R01056.kb*D_minus_Ribulose_space_5_minus_phosphate; R01830 = R01830.kf*beta_minus_D_minus_Fructose_space_6_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01830.kb*D_minus_Erythrose_space_4_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate; R04779 = R04779.kf*beta_minus_D_minus_Fructose_space_6_minus_phosphate - R04779.kb*beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate; R01519 = R01519.kf*D_minus_Glucono_minus_1_space_5_minus_lactone - R01519.kb*D_minus_Gluconic_space_acid; R02035 = R02035.kf*D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate - R02035.kb*space_6_minus_Phospho_minus_D_minus_gluconate; R02740 = R02740.kf*alpha_minus_D_minus_Glucose_space_6_minus_phosphate - R02740.kb*beta_minus_D_minus_Fructose_space_6_minus_phosphate; R01528 = R01528.kf*space_6_minus_Phospho_minus_D_minus_gluconate - R01528.kb*D_minus_Ribulose_space_5_minus_phosphate*CO2; R01057 = R01057.kf*alpha_minus_D_minus_Ribose_space_1_minus_phosphate - R01057.kb*D_minus_Ribose_space_5_minus_phosphate; R01827 = R01827.kf*D_minus_Sedoheptulose_space_7_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01827.kb*D_minus_Erythrose_space_4_minus_phosphate*D_minus_Fructose_space_6_minus_phosphate; R01070 = R01070.kf*beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate - R01070.kb*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal; R02739 = R02739.kf*alpha_minus_D_minus_Glucose_space_6_minus_phosphate - R02739.kb*beta_minus_D_minus_Glucose_space_6_minus_phosphate; R01641 = R01641.kf*D_minus_Sedoheptulose_space_7_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01641.kb*D_minus_Ribose_space_5_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate; R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate; R02736 = R02736.kf*beta_minus_D_minus_Glucose_space_6_minus_phosphate - R02736.kb*D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate; R04780 = R04780.kf*beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate - R04780.kb*beta_minus_D_minus_Fructose_space_6_minus_phosphate; R01049 = R01049.kf*D_minus_Ribose_space_5_minus_phosphate - R01049.kb*space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate; // variable properties default.sbmlRole="compartment"; uVol.sbmlRole="compartment"; E5_space_3_space_1_space_9.sbmlRole="species"; E5_space_3_space_1_space_9.sbmlCompartment="uVol"; E2_space_7_space_1_space_15.sbmlRole="species"; E2_space_7_space_1_space_15.sbmlCompartment="uVol"; E3_space_1_space_3_space_11.sbmlRole="species"; E3_space_1_space_3_space_11.sbmlCompartment="uVol"; E2_space_7_space_1_space_11.sbmlRole="species"; E2_space_7_space_1_space_11.sbmlCompartment="uVol"; E4_space_1_space_2_space_13.sbmlRole="species"; E4_space_1_space_2_space_13.sbmlCompartment="uVol"; E3_space_1_space_1_space_17.sbmlRole="species"; E3_space_1_space_1_space_17.sbmlCompartment="uVol"; E1_space_1_space_1_space_49.sbmlRole="species"; E1_space_1_space_1_space_49.sbmlCompartment="uVol"; E2_space_7_space_1_space_12.sbmlRole="species"; E2_space_7_space_1_space_12.sbmlCompartment="uVol"; E2_space_2_space_1_space_1.sbmlRole="species"; E2_space_2_space_1_space_1.sbmlCompartment="uVol"; E3_space_1_space_1_space_31.sbmlRole="species"; E3_space_1_space_1_space_31.sbmlCompartment="uVol"; E1_space_1_space_1_space_44.sbmlRole="species"; E1_space_1_space_1_space_44.sbmlCompartment="uVol"; E2_space_2_space_1_space_2.sbmlRole="species"; E2_space_2_space_1_space_2.sbmlCompartment="uVol"; E5_space_1_space_3_space_1.sbmlRole="species"; E5_space_1_space_3_space_1.sbmlCompartment="uVol"; E5_space_3_space_1_space_6.sbmlRole="species"; E5_space_3_space_1_space_6.sbmlCompartment="uVol"; E2_space_7_space_6_space_1.sbmlRole="species"; E2_space_7_space_6_space_1.sbmlCompartment="uVol"; E5_space_4_space_2_space_2.sbmlRole="species"; E5_space_4_space_2_space_2.sbmlCompartment="uVol"; Deoxyribose.sbmlRole="species"; Deoxyribose.sbmlCompartment="uVol"; alpha_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species"; alpha_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol"; D_minus_Glucono_minus_1_space_5_minus_lactone.sbmlRole="species"; D_minus_Glucono_minus_1_space_5_minus_lactone.sbmlCompartment="uVol"; beta_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species"; beta_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol"; beta_minus_D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species"; beta_minus_D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol"; beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlRole="species"; beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlCompartment="uVol"; space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlRole="species"; space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlCompartment="uVol"; space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate.sbmlRole="species"; space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate.sbmlCompartment="uVol"; D_minus_Gluconic_space_acid.sbmlRole="species"; D_minus_Gluconic_space_acid.sbmlCompartment="uVol"; D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate.sbmlRole="species"; D_minus_Glucono_minus_1_space_5_minus_lactone_space_6_minus_phosphate.sbmlCompartment="uVol"; D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species"; D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol"; space_6_minus_Phospho_minus_D_minus_gluconate.sbmlRole="species"; space_6_minus_Phospho_minus_D_minus_gluconate.sbmlCompartment="uVol"; D_minus_Erythrose_space_4_minus_phosphate.sbmlRole="species"; D_minus_Erythrose_space_4_minus_phosphate.sbmlCompartment="uVol"; CO2.sbmlRole="species"; CO2.sbmlCompartment="uVol"; D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species"; D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol"; D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species"; D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol"; D_minus_Ribose_space_5_minus_phosphate.sbmlRole="species"; D_minus_Ribose_space_5_minus_phosphate.sbmlCompartment="uVol"; D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlRole="species"; D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlCompartment="uVol"; D_minus_Ribose.sbmlRole="species"; D_minus_Ribose.sbmlCompartment="uVol"; alpha_minus_D_minus_Ribose_space_1_minus_phosphate.sbmlRole="species"; alpha_minus_D_minus_Ribose_space_1_minus_phosphate.sbmlCompartment="uVol"; space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlRole="species"; space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlCompartment="uVol"; R01737.sbmlRole="rate"; R01737.kf.sbmlRole="rate"; R01737.kb.sbmlRole="rate"; R02750.sbmlRole="rate"; R02750.kf.sbmlRole="rate"; R02750.kb.sbmlRole="rate"; R01051.sbmlRole="rate"; R01051.kf.sbmlRole="rate"; R01051.kb.sbmlRole="rate"; R01056.sbmlRole="rate"; R01056.kf.sbmlRole="rate"; R01056.kb.sbmlRole="rate"; R01830.sbmlRole="rate"; R01830.kf.sbmlRole="rate"; R01830.kb.sbmlRole="rate"; R04779.sbmlRole="rate"; R04779.kf.sbmlRole="rate"; R04779.kb.sbmlRole="rate"; R01519.sbmlRole="rate"; R01519.kf.sbmlRole="rate"; R01519.kb.sbmlRole="rate"; R02035.sbmlRole="rate"; R02035.kf.sbmlRole="rate"; R02035.kb.sbmlRole="rate"; R02740.sbmlRole="rate"; R02740.kf.sbmlRole="rate"; R02740.kb.sbmlRole="rate"; R01528.sbmlRole="rate"; R01528.kf.sbmlRole="rate"; R01528.kb.sbmlRole="rate"; R01057.sbmlRole="rate"; R01057.kf.sbmlRole="rate"; R01057.kb.sbmlRole="rate"; R01827.sbmlRole="rate"; R01827.kf.sbmlRole="rate"; R01827.kb.sbmlRole="rate"; R01070.sbmlRole="rate"; R01070.kf.sbmlRole="rate"; R01070.kb.sbmlRole="rate"; R02739.sbmlRole="rate"; R02739.kf.sbmlRole="rate"; R02739.kb.sbmlRole="rate"; R01641.sbmlRole="rate"; R01641.kf.sbmlRole="rate"; R01641.kb.sbmlRole="rate"; R01529.sbmlRole="rate"; R01529.kf.sbmlRole="rate"; R01529.kb.sbmlRole="rate"; R02736.sbmlRole="rate"; R02736.kf.sbmlRole="rate"; R02736.kb.sbmlRole="rate"; R04780.sbmlRole="rate"; R04780.kf.sbmlRole="rate"; R04780.kb.sbmlRole="rate"; R01049.sbmlRole="rate"; R01049.kf.sbmlRole="rate"; R01049.kb.sbmlRole="rate"; }