// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02750: Deoxyribose => space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate 
// R02740: alpha_minus_D_minus_Glucose_space_6_minus_phosphate => beta_minus_D_minus_Fructose_space_6_minus_phosphate 
// R01051: D_minus_Ribose => D_minus_Ribose_space_5_minus_phosphate 
// R01056: D_minus_Ribose_space_5_minus_phosphate => D_minus_Ribulose_space_5_minus_phosphate 
// R02739: alpha_minus_D_minus_Glucose_space_6_minus_phosphate => beta_minus_D_minus_Glucose_space_6_minus_phosphate 
// R01070: beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate => space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal 
// R01830: beta_minus_D_minus_Fructose_space_6_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Erythrose_space_4_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate 
// R01641: D_minus_Sedoheptulose_space_7_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Ribose_space_5_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate 
// R01066: space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate => space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal 
// R01049: D_minus_Ribose_space_5_minus_phosphate => space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E5_space_3_space_1_space_9 = 0 M;
  real E2_space_7_space_1_space_15 = 0 M;
  real E4_space_1_space_2_space_13 = 0 M;
  real E4_space_1_space_2_space_4 = 0 M;
  real E2_space_2_space_1_space_1 = 0 M;
  real E5_space_3_space_1_space_6 = 0 M;
  real E2_space_7_space_6_space_1 = 0 M;
  real Deoxyribose(time) M;
  real alpha_minus_D_minus_Glucose_space_6_minus_phosphate(time) M;
  real beta_minus_D_minus_Glucose_space_6_minus_phosphate(time) M;
  real beta_minus_D_minus_Fructose_space_6_minus_phosphate(time) M;
  real beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate(time) M;
  real space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal(time) M;
  real space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate(time) M;
  real D_minus_Erythrose_space_4_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribose_space_5_minus_phosphate(time) M;
  real D_minus_Sedoheptulose_space_7_minus_phosphate(time) M;
  real D_minus_Ribose(time) M;
  real space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate(time) M;
  real R02750(time) katal;
  extern real R02750.kf;
  extern real R02750.kb;
  real R02740(time) katal;
  extern real R02740.kf;
  extern real R02740.kb;
  real R01051(time) katal;
  extern real R01051.kf;
  extern real R01051.kb;
  real R01056(time) katal;
  extern real R01056.kf;
  extern real R01056.kb;
  real R02739(time) katal;
  extern real R02739.kf;
  extern real R02739.kb;
  real R01070(time) katal;
  extern real R01070.kf;
  extern real R01070.kb;
  real R01830(time) katal;
  extern real R01830.kf;
  extern real R01830.kb;
  real R01641(time) katal;
  extern real R01641.kf;
  extern real R01641.kb;
  real R01066(time) katal;
  extern real R01066.kf;
  extern real R01066.kb;
  real R01049(time) katal;
  extern real R01049.kf;
  extern real R01049.kb;

  // equations
  when (time=time.min) Deoxyribose = 0;
  Deoxyribose:time = (-1*R02750)/uVol;
  when (time=time.min) alpha_minus_D_minus_Glucose_space_6_minus_phosphate = 0;
  alpha_minus_D_minus_Glucose_space_6_minus_phosphate:time = (-1*R02740 + -1*R02739)/uVol;
  when (time=time.min) beta_minus_D_minus_Glucose_space_6_minus_phosphate = 0;
  beta_minus_D_minus_Glucose_space_6_minus_phosphate:time = (R02739)/uVol;
  when (time=time.min) beta_minus_D_minus_Fructose_space_6_minus_phosphate = 0;
  beta_minus_D_minus_Fructose_space_6_minus_phosphate:time = (R02740 + -1*R01830)/uVol;
  when (time=time.min) beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate = 0;
  beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate:time = (-1*R01070)/uVol;
  when (time=time.min) space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal = 0;
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal:time = (R01070 + -1*R01830 + -1*R01641 + R01066)/uVol;
  when (time=time.min) space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate = 0;
  space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate:time = (R02750 + -1*R01066)/uVol;
  when (time=time.min) D_minus_Erythrose_space_4_minus_phosphate = 0;
  D_minus_Erythrose_space_4_minus_phosphate:time = (R01830)/uVol;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  D_minus_Ribulose_space_5_minus_phosphate:time = (R01056)/uVol;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  D_minus_Xylulose_space_5_minus_phosphate:time = (R01830 + R01641)/uVol;
  when (time=time.min) D_minus_Ribose_space_5_minus_phosphate = 0;
  D_minus_Ribose_space_5_minus_phosphate:time = (R01051 + -1*R01056 + R01641 + -1*R01049)/uVol;
  when (time=time.min) D_minus_Sedoheptulose_space_7_minus_phosphate = 0;
  D_minus_Sedoheptulose_space_7_minus_phosphate:time = (-1*R01641)/uVol;
  when (time=time.min) D_minus_Ribose = 0;
  D_minus_Ribose:time = (-1*R01051)/uVol;
  when (time=time.min) space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate = 0;
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate:time = (R01049)/uVol;
  R02750 = R02750.kf*Deoxyribose - R02750.kb*space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate;
  R02740 = R02740.kf*alpha_minus_D_minus_Glucose_space_6_minus_phosphate - R02740.kb*beta_minus_D_minus_Fructose_space_6_minus_phosphate;
  R01051 = R01051.kf*D_minus_Ribose - R01051.kb*D_minus_Ribose_space_5_minus_phosphate;
  R01056 = R01056.kf*D_minus_Ribose_space_5_minus_phosphate - R01056.kb*D_minus_Ribulose_space_5_minus_phosphate;
  R02739 = R02739.kf*alpha_minus_D_minus_Glucose_space_6_minus_phosphate - R02739.kb*beta_minus_D_minus_Glucose_space_6_minus_phosphate;
  R01070 = R01070.kf*beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate - R01070.kb*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal;
  R01830 = R01830.kf*beta_minus_D_minus_Fructose_space_6_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01830.kb*D_minus_Erythrose_space_4_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate;
  R01641 = R01641.kf*D_minus_Sedoheptulose_space_7_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01641.kb*D_minus_Ribose_space_5_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate;
  R01066 = R01066.kf*space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate - R01066.kb*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal;
  R01049 = R01049.kf*D_minus_Ribose_space_5_minus_phosphate - R01049.kb*space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E5_space_3_space_1_space_9.sbmlRole="species";
  E5_space_3_space_1_space_9.sbmlCompartment="uVol";
  E2_space_7_space_1_space_15.sbmlRole="species";
  E2_space_7_space_1_space_15.sbmlCompartment="uVol";
  E4_space_1_space_2_space_13.sbmlRole="species";
  E4_space_1_space_2_space_13.sbmlCompartment="uVol";
  E4_space_1_space_2_space_4.sbmlRole="species";
  E4_space_1_space_2_space_4.sbmlCompartment="uVol";
  E2_space_2_space_1_space_1.sbmlRole="species";
  E2_space_2_space_1_space_1.sbmlCompartment="uVol";
  E5_space_3_space_1_space_6.sbmlRole="species";
  E5_space_3_space_1_space_6.sbmlCompartment="uVol";
  E2_space_7_space_6_space_1.sbmlRole="species";
  E2_space_7_space_6_space_1.sbmlCompartment="uVol";
  Deoxyribose.sbmlRole="species";
  Deoxyribose.sbmlCompartment="uVol";
  alpha_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species";
  alpha_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol";
  beta_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species";
  beta_minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol";
  beta_minus_D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species";
  beta_minus_D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol";
  beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlRole="species";
  beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlCompartment="uVol";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlRole="species";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlCompartment="uVol";
  space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate.sbmlRole="species";
  space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlRole="species";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlRole="species";
  D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribose.sbmlRole="species";
  D_minus_Ribose.sbmlCompartment="uVol";
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlRole="species";
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlCompartment="uVol";
  R02750.sbmlRole="rate";
  R02750.kf.sbmlRole="rate";
  R02750.kb.sbmlRole="rate";
  R02740.sbmlRole="rate";
  R02740.kf.sbmlRole="rate";
  R02740.kb.sbmlRole="rate";
  R01051.sbmlRole="rate";
  R01051.kf.sbmlRole="rate";
  R01051.kb.sbmlRole="rate";
  R01056.sbmlRole="rate";
  R01056.kf.sbmlRole="rate";
  R01056.kb.sbmlRole="rate";
  R02739.sbmlRole="rate";
  R02739.kf.sbmlRole="rate";
  R02739.kb.sbmlRole="rate";
  R01070.sbmlRole="rate";
  R01070.kf.sbmlRole="rate";
  R01070.kb.sbmlRole="rate";
  R01830.sbmlRole="rate";
  R01830.kf.sbmlRole="rate";
  R01830.kb.sbmlRole="rate";
  R01641.sbmlRole="rate";
  R01641.kf.sbmlRole="rate";
  R01641.kb.sbmlRole="rate";
  R01066.sbmlRole="rate";
  R01066.kf.sbmlRole="rate";
  R01066.kb.sbmlRole="rate";
  R01049.sbmlRole="rate";
  R01049.kf.sbmlRole="rate";
  R01049.kb.sbmlRole="rate";
}