// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02082: space_R_space_minus_Mevalonate <=> space_S_space_minus_3_minus_Hydroxy_minus_3_minus_methylglutaryl_minus_CoA 
// R02003: Geranyl_space_diphosphate Isopentenyl_space_diphosphate <=> trans_space_trans_minus_Farnesyl_space_diphosphate 
// R01658: Dimethylallyl_space_diphosphate Isopentenyl_space_diphosphate <=> Geranyl_space_diphosphate 
// R01123: Isopentenyl_space_diphosphate => Dimethylallyl_space_diphosphate 
// R02245: space_R_space_minus_Mevalonate <=> space_R_space_minus_5_minus_Phosphomevalonate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E5_space_3_space_3_space_2 = 0 M;
  real E2_space_5_space_1_space_1 = 0 M;
  real E2_space_5_space_1_space_10 = 0 M;
  real E2_space_7_space_1_space_36 = 0 M;
  real E1_space_1_space_1_space_34 = 0 M;
  real Dimethylallyl_space_diphosphate(time) M;
  real Geranyl_space_diphosphate(time) M;
  real Isopentenyl_space_diphosphate(time) M;
  real trans_space_trans_minus_Farnesyl_space_diphosphate(time) M;
  real space_R_space_minus_5_minus_Phosphomevalonate(time) M;
  real space_R_space_minus_Mevalonate(time) M;
  real space_S_space_minus_3_minus_Hydroxy_minus_3_minus_methylglutaryl_minus_CoA(time) M;
  real R02082(time) katal;
  extern real R02082.kf;
  extern real R02082.kb;
  real R02003(time) katal;
  extern real R02003.kf;
  extern real R02003.kb;
  real R01658(time) katal;
  extern real R01658.kf;
  extern real R01658.kb;
  real R01123(time) katal;
  extern real R01123.kf;
  extern real R01123.kb;
  real R02245(time) katal;
  extern real R02245.kf;
  extern real R02245.kb;

  // equations
  when (time=time.min) Dimethylallyl_space_diphosphate = 0;
  Dimethylallyl_space_diphosphate:time = (-1*R01658 + R01123)/uVol;
  when (time=time.min) Geranyl_space_diphosphate = 0;
  Geranyl_space_diphosphate:time = (-1*R02003 + R01658)/uVol;
  when (time=time.min) Isopentenyl_space_diphosphate = 0;
  Isopentenyl_space_diphosphate:time = (-1*R02003 + -1*R01658 + -1*R01123)/uVol;
  when (time=time.min) trans_space_trans_minus_Farnesyl_space_diphosphate = 0;
  trans_space_trans_minus_Farnesyl_space_diphosphate:time = (R02003)/uVol;
  when (time=time.min) space_R_space_minus_5_minus_Phosphomevalonate = 0;
  space_R_space_minus_5_minus_Phosphomevalonate:time = (R02245)/uVol;
  when (time=time.min) space_R_space_minus_Mevalonate = 0;
  space_R_space_minus_Mevalonate:time = (-1*R02082 + -1*R02245)/uVol;
  when (time=time.min) space_S_space_minus_3_minus_Hydroxy_minus_3_minus_methylglutaryl_minus_CoA = 0;
  space_S_space_minus_3_minus_Hydroxy_minus_3_minus_methylglutaryl_minus_CoA:time = (R02082)/uVol;
  R02082 = R02082.kf*space_R_space_minus_Mevalonate - R02082.kb*space_S_space_minus_3_minus_Hydroxy_minus_3_minus_methylglutaryl_minus_CoA;
  R02003 = R02003.kf*Geranyl_space_diphosphate*Isopentenyl_space_diphosphate - R02003.kb*trans_space_trans_minus_Farnesyl_space_diphosphate;
  R01658 = R01658.kf*Dimethylallyl_space_diphosphate*Isopentenyl_space_diphosphate - R01658.kb*Geranyl_space_diphosphate;
  R01123 = R01123.kf*Isopentenyl_space_diphosphate - R01123.kb*Dimethylallyl_space_diphosphate;
  R02245 = R02245.kf*space_R_space_minus_Mevalonate - R02245.kb*space_R_space_minus_5_minus_Phosphomevalonate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E5_space_3_space_3_space_2.sbmlRole="species";
  E5_space_3_space_3_space_2.sbmlCompartment="uVol";
  E2_space_5_space_1_space_1.sbmlRole="species";
  E2_space_5_space_1_space_1.sbmlCompartment="uVol";
  E2_space_5_space_1_space_10.sbmlRole="species";
  E2_space_5_space_1_space_10.sbmlCompartment="uVol";
  E2_space_7_space_1_space_36.sbmlRole="species";
  E2_space_7_space_1_space_36.sbmlCompartment="uVol";
  E1_space_1_space_1_space_34.sbmlRole="species";
  E1_space_1_space_1_space_34.sbmlCompartment="uVol";
  Dimethylallyl_space_diphosphate.sbmlRole="species";
  Dimethylallyl_space_diphosphate.sbmlCompartment="uVol";
  Geranyl_space_diphosphate.sbmlRole="species";
  Geranyl_space_diphosphate.sbmlCompartment="uVol";
  Isopentenyl_space_diphosphate.sbmlRole="species";
  Isopentenyl_space_diphosphate.sbmlCompartment="uVol";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlRole="species";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlCompartment="uVol";
  space_R_space_minus_5_minus_Phosphomevalonate.sbmlRole="species";
  space_R_space_minus_5_minus_Phosphomevalonate.sbmlCompartment="uVol";
  space_R_space_minus_Mevalonate.sbmlRole="species";
  space_R_space_minus_Mevalonate.sbmlCompartment="uVol";
  space_S_space_minus_3_minus_Hydroxy_minus_3_minus_methylglutaryl_minus_CoA.sbmlRole="species";
  space_S_space_minus_3_minus_Hydroxy_minus_3_minus_methylglutaryl_minus_CoA.sbmlCompartment="uVol";
  R02082.sbmlRole="rate";
  R02082.kf.sbmlRole="rate";
  R02082.kb.sbmlRole="rate";
  R02003.sbmlRole="rate";
  R02003.kf.sbmlRole="rate";
  R02003.kb.sbmlRole="rate";
  R01658.sbmlRole="rate";
  R01658.kf.sbmlRole="rate";
  R01658.kb.sbmlRole="rate";
  R01123.sbmlRole="rate";
  R01123.kf.sbmlRole="rate";
  R01123.kb.sbmlRole="rate";
  R02245.sbmlRole="rate";
  R02245.kf.sbmlRole="rate";
  R02245.kb.sbmlRole="rate";
}