// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04811: space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA <=> Chenodeoxyglycocholoyl_minus_CoA 
// R04546: space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanoyl_minus_CoA <=> Chenodeoxycholoyl_minus_CoA 
// R03719: space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA <=> Choloyl_minus_CoA 
// R04805: space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane <=> space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_3_space_1_space_16 = 0 M;
  real E1_space_1_space_1_space_1 = 0 M;
  real space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA(time) M;
  real Choloyl_minus_CoA(time) M;
  real space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane(time) M;
  real space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al(time) M;
  real space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanoyl_minus_CoA(time) M;
  real space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA(time) M;
  real Chenodeoxyglycocholoyl_minus_CoA(time) M;
  real Chenodeoxycholoyl_minus_CoA(time) M;
  real R04811(time) katal;
  extern real R04811.kf;
  extern real R04811.kb;
  real R04546(time) katal;
  extern real R04546.kf;
  extern real R04546.kb;
  real R03719(time) katal;
  extern real R03719.kf;
  extern real R03719.kb;
  real R04805(time) katal;
  extern real R04805.kf;
  extern real R04805.kb;

  // equations
  when (time=time.min) space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA = 0;
  space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA:time = (-1*R03719)/uVol;
  when (time=time.min) Choloyl_minus_CoA = 0;
  Choloyl_minus_CoA:time = (R03719)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane = 0;
  space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane:time = (-1*R04805)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al = 0;
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al:time = (R04805)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanoyl_minus_CoA = 0;
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanoyl_minus_CoA:time = (-1*R04546)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA = 0;
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA:time = (-1*R04811)/uVol;
  when (time=time.min) Chenodeoxyglycocholoyl_minus_CoA = 0;
  Chenodeoxyglycocholoyl_minus_CoA:time = (R04811)/uVol;
  when (time=time.min) Chenodeoxycholoyl_minus_CoA = 0;
  Chenodeoxycholoyl_minus_CoA:time = (R04546)/uVol;
  R04811 = R04811.kf*space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA - R04811.kb*Chenodeoxyglycocholoyl_minus_CoA;
  R04546 = R04546.kf*space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanoyl_minus_CoA - R04546.kb*Chenodeoxycholoyl_minus_CoA;
  R03719 = R03719.kf*space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA - R03719.kb*Choloyl_minus_CoA;
  R04805 = R04805.kf*space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane - R04805.kb*space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_3_space_1_space_16.sbmlRole="species";
  E2_space_3_space_1_space_16.sbmlCompartment="uVol";
  E1_space_1_space_1_space_1.sbmlRole="species";
  E1_space_1_space_1_space_1.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA.sbmlRole="species";
  space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA.sbmlCompartment="uVol";
  Choloyl_minus_CoA.sbmlRole="species";
  Choloyl_minus_CoA.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane.sbmlRole="species";
  space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al.sbmlRole="species";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanoyl_minus_CoA.sbmlRole="species";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanoyl_minus_CoA.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA.sbmlRole="species";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_24_minus_oxocholestanoyl_minus_CoA.sbmlCompartment="uVol";
  Chenodeoxyglycocholoyl_minus_CoA.sbmlRole="species";
  Chenodeoxyglycocholoyl_minus_CoA.sbmlCompartment="uVol";
  Chenodeoxycholoyl_minus_CoA.sbmlRole="species";
  Chenodeoxycholoyl_minus_CoA.sbmlCompartment="uVol";
  R04811.sbmlRole="rate";
  R04811.kf.sbmlRole="rate";
  R04811.kb.sbmlRole="rate";
  R04546.sbmlRole="rate";
  R04546.kf.sbmlRole="rate";
  R04546.kb.sbmlRole="rate";
  R03719.sbmlRole="rate";
  R03719.kf.sbmlRole="rate";
  R03719.kb.sbmlRole="rate";
  R04805.sbmlRole="rate";
  R04805.kf.sbmlRole="rate";
  R04805.kb.sbmlRole="rate";
}