// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04986: space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate <=> space_2_minus_Octaprenylphenol 
// R05615: all_minus_trans_minus_Octaprenyl_space_diphosphate space_4_minus_Hydroxybenzoate <=> space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate 
// R02166: Ubiquinone => Ubiquinol 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_6_space_5_space_3 = 0 M;
  real E4_space_1_space_1_space_minus_ = 0 M;
  real E2_space_5_space_1_space_minus_ = 0 M;
  real space_4_minus_Hydroxybenzoate(time) M;
  real Ubiquinol(time) M;
  real Ubiquinone(time) M;
  real space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate(time) M;
  real space_2_minus_Octaprenylphenol(time) M;
  real all_minus_trans_minus_Octaprenyl_space_diphosphate(time) M;
  real R04986(time) katal;
  extern real R04986.kf;
  extern real R04986.kb;
  real R05615(time) katal;
  extern real R05615.kf;
  extern real R05615.kb;
  real R02166(time) katal;
  extern real R02166.kf;
  extern real R02166.kb;

  // equations
  when (time=time.min) space_4_minus_Hydroxybenzoate = 0;
  space_4_minus_Hydroxybenzoate:time = (-1*R05615)/uVol;
  when (time=time.min) Ubiquinol = 0;
  Ubiquinol:time = (R02166)/uVol;
  when (time=time.min) Ubiquinone = 0;
  Ubiquinone:time = (-1*R02166)/uVol;
  when (time=time.min) space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate = 0;
  space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate:time = (-1*R04986 + R05615)/uVol;
  when (time=time.min) space_2_minus_Octaprenylphenol = 0;
  space_2_minus_Octaprenylphenol:time = (R04986)/uVol;
  when (time=time.min) all_minus_trans_minus_Octaprenyl_space_diphosphate = 0;
  all_minus_trans_minus_Octaprenyl_space_diphosphate:time = (-1*R05615)/uVol;
  R04986 = R04986.kf*space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate - R04986.kb*space_2_minus_Octaprenylphenol;
  R05615 = R05615.kf*all_minus_trans_minus_Octaprenyl_space_diphosphate*space_4_minus_Hydroxybenzoate - R05615.kb*space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate;
  R02166 = R02166.kf*Ubiquinone - R02166.kb*Ubiquinol;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_6_space_5_space_3.sbmlRole="species";
  E1_space_6_space_5_space_3.sbmlCompartment="uVol";
  E4_space_1_space_1_space_minus_.sbmlRole="species";
  E4_space_1_space_1_space_minus_.sbmlCompartment="uVol";
  E2_space_5_space_1_space_minus_.sbmlRole="species";
  E2_space_5_space_1_space_minus_.sbmlCompartment="uVol";
  space_4_minus_Hydroxybenzoate.sbmlRole="species";
  space_4_minus_Hydroxybenzoate.sbmlCompartment="uVol";
  Ubiquinol.sbmlRole="species";
  Ubiquinol.sbmlCompartment="uVol";
  Ubiquinone.sbmlRole="species";
  Ubiquinone.sbmlCompartment="uVol";
  space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate.sbmlRole="species";
  space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate.sbmlCompartment="uVol";
  space_2_minus_Octaprenylphenol.sbmlRole="species";
  space_2_minus_Octaprenylphenol.sbmlCompartment="uVol";
  all_minus_trans_minus_Octaprenyl_space_diphosphate.sbmlRole="species";
  all_minus_trans_minus_Octaprenyl_space_diphosphate.sbmlCompartment="uVol";
  R04986.sbmlRole="rate";
  R04986.kf.sbmlRole="rate";
  R04986.kb.sbmlRole="rate";
  R05615.sbmlRole="rate";
  R05615.kf.sbmlRole="rate";
  R05615.kb.sbmlRole="rate";
  R02166.sbmlRole="rate";
  R02166.kf.sbmlRole="rate";
  R02166.kb.sbmlRole="rate";
}