// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01157: Agmatine <=> Putrescine 
// R03180: space_4_minus_Guanidinobutanamide <=> space_4_minus_Guanidinobutanoate 
// R02283: N_minus_Acetylornithine => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde 
// R02649: N_minus_Acetyl_minus_L_minus_glutamate <=> N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate 
// R03443: N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate 
// R01920: Putrescine S_minus_Adenosylmethioninamine <=> Spermidine 
// R00178: S_minus_Adenosyl_minus_L_minus_methionine <=> S_minus_Adenosylmethioninamine CO2 
// R01398: Carbamoyl_space_phosphate L_minus_Ornithine <=> L_minus_Citrulline 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_2_space_8 = 0 M;
  real E2_space_6_space_1_space_11 = 0 M;
  real E2_space_1_space_3_space_3 = 0 M;
  real E3_space_5_space_3_space_11 = 0 M;
  real E2_space_5_space_1_space_16 = 0 M;
  real E4_space_1_space_1_space_50 = 0 M;
  real E1_space_2_space_1_space_38 = 0 M;
  real E3_space_5_space_1_space_4 = 0 M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate(time) M;
  real Carbamoyl_space_phosphate(time) M;
  real N_minus_Acetylornithine(time) M;
  real L_minus_Citrulline(time) M;
  real L_minus_Ornithine(time) M;
  real Putrescine(time) M;
  real Spermidine(time) M;
  real S_minus_Adenosylmethioninamine(time) M;
  real CO2(time) M;
  real S_minus_Adenosyl_minus_L_minus_methionine(time) M;
  real Agmatine(time) M;
  real space_4_minus_Guanidinobutanamide(time) M;
  real space_4_minus_Guanidinobutanoate(time) M;
  real R01157(time) katal;
  extern real R01157.kf;
  extern real R01157.kb;
  real R03180(time) katal;
  extern real R03180.kf;
  extern real R03180.kb;
  real R02283(time) katal;
  extern real R02283.kf;
  extern real R02283.kb;
  real R02649(time) katal;
  extern real R02649.kf;
  extern real R02649.kb;
  real R03443(time) katal;
  extern real R03443.kf;
  extern real R03443.kb;
  real R01920(time) katal;
  extern real R01920.kf;
  extern real R01920.kb;
  real R00178(time) katal;
  extern real R00178.kf;
  extern real R00178.kb;
  real R01398(time) katal;
  extern real R01398.kf;
  extern real R01398.kb;

  // equations
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate:time = (R02649 + R03443)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde:time = (R02283 + -1*R03443)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate:time = (-1*R02649)/uVol;
  when (time=time.min) Carbamoyl_space_phosphate = 0;
  Carbamoyl_space_phosphate:time = (-1*R01398)/uVol;
  when (time=time.min) N_minus_Acetylornithine = 0;
  N_minus_Acetylornithine:time = (-1*R02283)/uVol;
  when (time=time.min) L_minus_Citrulline = 0;
  L_minus_Citrulline:time = (R01398)/uVol;
  when (time=time.min) L_minus_Ornithine = 0;
  L_minus_Ornithine:time = (-1*R01398)/uVol;
  when (time=time.min) Putrescine = 0;
  Putrescine:time = (R01157 + -1*R01920)/uVol;
  when (time=time.min) Spermidine = 0;
  Spermidine:time = (R01920)/uVol;
  when (time=time.min) S_minus_Adenosylmethioninamine = 0;
  S_minus_Adenosylmethioninamine:time = (-1*R01920 + R00178)/uVol;
  when (time=time.min) CO2 = 0;
  CO2:time = (R00178)/uVol;
  when (time=time.min) S_minus_Adenosyl_minus_L_minus_methionine = 0;
  S_minus_Adenosyl_minus_L_minus_methionine:time = (-1*R00178)/uVol;
  when (time=time.min) Agmatine = 0;
  Agmatine:time = (-1*R01157)/uVol;
  when (time=time.min) space_4_minus_Guanidinobutanamide = 0;
  space_4_minus_Guanidinobutanamide:time = (-1*R03180)/uVol;
  when (time=time.min) space_4_minus_Guanidinobutanoate = 0;
  space_4_minus_Guanidinobutanoate:time = (R03180)/uVol;
  R01157 = R01157.kf*Agmatine - R01157.kb*Putrescine;
  R03180 = R03180.kf*space_4_minus_Guanidinobutanamide - R03180.kb*space_4_minus_Guanidinobutanoate;
  R02283 = R02283.kf*N_minus_Acetylornithine - R02283.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde;
  R02649 = R02649.kf*N_minus_Acetyl_minus_L_minus_glutamate - R02649.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate;
  R03443 = R03443.kf*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde - R03443.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate;
  R01920 = R01920.kf*Putrescine*S_minus_Adenosylmethioninamine - R01920.kb*Spermidine;
  R00178 = R00178.kf*S_minus_Adenosyl_minus_L_minus_methionine - R00178.kb*S_minus_Adenosylmethioninamine*CO2;
  R01398 = R01398.kf*Carbamoyl_space_phosphate*L_minus_Ornithine - R01398.kb*L_minus_Citrulline;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_2_space_8.sbmlRole="species";
  E2_space_7_space_2_space_8.sbmlCompartment="uVol";
  E2_space_6_space_1_space_11.sbmlRole="species";
  E2_space_6_space_1_space_11.sbmlCompartment="uVol";
  E2_space_1_space_3_space_3.sbmlRole="species";
  E2_space_1_space_3_space_3.sbmlCompartment="uVol";
  E3_space_5_space_3_space_11.sbmlRole="species";
  E3_space_5_space_3_space_11.sbmlCompartment="uVol";
  E2_space_5_space_1_space_16.sbmlRole="species";
  E2_space_5_space_1_space_16.sbmlCompartment="uVol";
  E4_space_1_space_1_space_50.sbmlRole="species";
  E4_space_1_space_1_space_50.sbmlCompartment="uVol";
  E1_space_2_space_1_space_38.sbmlRole="species";
  E1_space_2_space_1_space_38.sbmlCompartment="uVol";
  E3_space_5_space_1_space_4.sbmlRole="species";
  E3_space_5_space_1_space_4.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlCompartment="uVol";
  Carbamoyl_space_phosphate.sbmlRole="species";
  Carbamoyl_space_phosphate.sbmlCompartment="uVol";
  N_minus_Acetylornithine.sbmlRole="species";
  N_minus_Acetylornithine.sbmlCompartment="uVol";
  L_minus_Citrulline.sbmlRole="species";
  L_minus_Citrulline.sbmlCompartment="uVol";
  L_minus_Ornithine.sbmlRole="species";
  L_minus_Ornithine.sbmlCompartment="uVol";
  Putrescine.sbmlRole="species";
  Putrescine.sbmlCompartment="uVol";
  Spermidine.sbmlRole="species";
  Spermidine.sbmlCompartment="uVol";
  S_minus_Adenosylmethioninamine.sbmlRole="species";
  S_minus_Adenosylmethioninamine.sbmlCompartment="uVol";
  CO2.sbmlRole="species";
  CO2.sbmlCompartment="uVol";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlRole="species";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlCompartment="uVol";
  Agmatine.sbmlRole="species";
  Agmatine.sbmlCompartment="uVol";
  space_4_minus_Guanidinobutanamide.sbmlRole="species";
  space_4_minus_Guanidinobutanamide.sbmlCompartment="uVol";
  space_4_minus_Guanidinobutanoate.sbmlRole="species";
  space_4_minus_Guanidinobutanoate.sbmlCompartment="uVol";
  R01157.sbmlRole="rate";
  R01157.kf.sbmlRole="rate";
  R01157.kb.sbmlRole="rate";
  R03180.sbmlRole="rate";
  R03180.kf.sbmlRole="rate";
  R03180.kb.sbmlRole="rate";
  R02283.sbmlRole="rate";
  R02283.kf.sbmlRole="rate";
  R02283.kb.sbmlRole="rate";
  R02649.sbmlRole="rate";
  R02649.kf.sbmlRole="rate";
  R02649.kb.sbmlRole="rate";
  R03443.sbmlRole="rate";
  R03443.kf.sbmlRole="rate";
  R03443.kb.sbmlRole="rate";
  R01920.sbmlRole="rate";
  R01920.kf.sbmlRole="rate";
  R01920.kb.sbmlRole="rate";
  R00178.sbmlRole="rate";
  R00178.kf.sbmlRole="rate";
  R00178.kb.sbmlRole="rate";
  R01398.sbmlRole="rate";
  R01398.kf.sbmlRole="rate";
  R01398.kb.sbmlRole="rate";
}