// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01827: D_minus_Sedoheptulose_space_7_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Erythrose_space_4_minus_phosphate D_minus_Fructose_space_6_minus_phosphate 
// R01056: D_minus_Ribose_space_5_minus_phosphate => D_minus_Ribulose_space_5_minus_phosphate 
// R01070: beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate => space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal 
// R01830: beta_minus_D_minus_Fructose_space_6_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Erythrose_space_4_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate 
// R01641: D_minus_Sedoheptulose_space_7_minus_phosphate space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal => D_minus_Ribose_space_5_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate 
// R01529: D_minus_Ribulose_space_5_minus_phosphate => D_minus_Xylulose_space_5_minus_phosphate 
// R04780: beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate <=> beta_minus_D_minus_Fructose_space_6_minus_phosphate 
// R01049: D_minus_Ribose_space_5_minus_phosphate => space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E3_space_1_space_3_space_11 = 0 M;
  real E4_space_1_space_2_space_13 = 0 M;
  real E2_space_2_space_1_space_1 = 0 M;
  real E2_space_2_space_1_space_2 = 0 M;
  real E5_space_1_space_3_space_1 = 0 M;
  real E5_space_3_space_1_space_6 = 0 M;
  real E2_space_7_space_6_space_1 = 0 M;
  real beta_minus_D_minus_Fructose_space_6_minus_phosphate(time) M;
  real beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate(time) M;
  real space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal(time) M;
  real D_minus_Fructose_space_6_minus_phosphate(time) M;
  real D_minus_Erythrose_space_4_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribose_space_5_minus_phosphate(time) M;
  real D_minus_Sedoheptulose_space_7_minus_phosphate(time) M;
  real space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate(time) M;
  real R01827(time) katal;
  extern real R01827.kf;
  extern real R01827.kb;
  real R01056(time) katal;
  extern real R01056.kf;
  extern real R01056.kb;
  real R01070(time) katal;
  extern real R01070.kf;
  extern real R01070.kb;
  real R01830(time) katal;
  extern real R01830.kf;
  extern real R01830.kb;
  real R01641(time) katal;
  extern real R01641.kf;
  extern real R01641.kb;
  real R01529(time) katal;
  extern real R01529.kf;
  extern real R01529.kb;
  real R04780(time) katal;
  extern real R04780.kf;
  extern real R04780.kb;
  real R01049(time) katal;
  extern real R01049.kf;
  extern real R01049.kb;

  // equations
  when (time=time.min) beta_minus_D_minus_Fructose_space_6_minus_phosphate = 0;
  beta_minus_D_minus_Fructose_space_6_minus_phosphate:time = (-1*R01830 + R04780)/uVol;
  when (time=time.min) beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate = 0;
  beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate:time = (-1*R01070 + -1*R04780)/uVol;
  when (time=time.min) space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal = 0;
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal:time = (-1*R01827 + R01070 + -1*R01830 + -1*R01641)/uVol;
  when (time=time.min) D_minus_Fructose_space_6_minus_phosphate = 0;
  D_minus_Fructose_space_6_minus_phosphate:time = (R01827)/uVol;
  when (time=time.min) D_minus_Erythrose_space_4_minus_phosphate = 0;
  D_minus_Erythrose_space_4_minus_phosphate:time = (R01827 + R01830)/uVol;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  D_minus_Ribulose_space_5_minus_phosphate:time = (R01056 + -1*R01529)/uVol;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  D_minus_Xylulose_space_5_minus_phosphate:time = (R01830 + R01641 + R01529)/uVol;
  when (time=time.min) D_minus_Ribose_space_5_minus_phosphate = 0;
  D_minus_Ribose_space_5_minus_phosphate:time = (-1*R01056 + R01641 + -1*R01049)/uVol;
  when (time=time.min) D_minus_Sedoheptulose_space_7_minus_phosphate = 0;
  D_minus_Sedoheptulose_space_7_minus_phosphate:time = (-1*R01827 + -1*R01641)/uVol;
  when (time=time.min) space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate = 0;
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate:time = (R01049)/uVol;
  R01827 = R01827.kf*D_minus_Sedoheptulose_space_7_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01827.kb*D_minus_Erythrose_space_4_minus_phosphate*D_minus_Fructose_space_6_minus_phosphate;
  R01056 = R01056.kf*D_minus_Ribose_space_5_minus_phosphate - R01056.kb*D_minus_Ribulose_space_5_minus_phosphate;
  R01070 = R01070.kf*beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate - R01070.kb*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal;
  R01830 = R01830.kf*beta_minus_D_minus_Fructose_space_6_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01830.kb*D_minus_Erythrose_space_4_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate;
  R01641 = R01641.kf*D_minus_Sedoheptulose_space_7_minus_phosphate*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal - R01641.kb*D_minus_Ribose_space_5_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate;
  R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R04780 = R04780.kf*beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate - R04780.kb*beta_minus_D_minus_Fructose_space_6_minus_phosphate;
  R01049 = R01049.kf*D_minus_Ribose_space_5_minus_phosphate - R01049.kb*space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E3_space_1_space_3_space_11.sbmlRole="species";
  E3_space_1_space_3_space_11.sbmlCompartment="uVol";
  E4_space_1_space_2_space_13.sbmlRole="species";
  E4_space_1_space_2_space_13.sbmlCompartment="uVol";
  E2_space_2_space_1_space_1.sbmlRole="species";
  E2_space_2_space_1_space_1.sbmlCompartment="uVol";
  E2_space_2_space_1_space_2.sbmlRole="species";
  E2_space_2_space_1_space_2.sbmlCompartment="uVol";
  E5_space_1_space_3_space_1.sbmlRole="species";
  E5_space_1_space_3_space_1.sbmlCompartment="uVol";
  E5_space_3_space_1_space_6.sbmlRole="species";
  E5_space_3_space_1_space_6.sbmlCompartment="uVol";
  E2_space_7_space_6_space_1.sbmlRole="species";
  E2_space_7_space_6_space_1.sbmlCompartment="uVol";
  beta_minus_D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species";
  beta_minus_D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol";
  beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlRole="species";
  beta_minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlCompartment="uVol";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlRole="species";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlCompartment="uVol";
  D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species";
  D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlRole="species";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlRole="species";
  D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlCompartment="uVol";
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlRole="species";
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlCompartment="uVol";
  R01827.sbmlRole="rate";
  R01827.kf.sbmlRole="rate";
  R01827.kb.sbmlRole="rate";
  R01056.sbmlRole="rate";
  R01056.kf.sbmlRole="rate";
  R01056.kb.sbmlRole="rate";
  R01070.sbmlRole="rate";
  R01070.kf.sbmlRole="rate";
  R01070.kb.sbmlRole="rate";
  R01830.sbmlRole="rate";
  R01830.kf.sbmlRole="rate";
  R01830.kb.sbmlRole="rate";
  R01641.sbmlRole="rate";
  R01641.kf.sbmlRole="rate";
  R01641.kb.sbmlRole="rate";
  R01529.sbmlRole="rate";
  R01529.kf.sbmlRole="rate";
  R01529.kb.sbmlRole="rate";
  R04780.sbmlRole="rate";
  R04780.kf.sbmlRole="rate";
  R04780.kb.sbmlRole="rate";
  R01049.sbmlRole="rate";
  R01049.kf.sbmlRole="rate";
  R01049.kb.sbmlRole="rate";
}