// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05634: space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol <=> space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol 
// R05633: space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate <=> space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol 
// R05688: space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate <=> space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate 
// R05637: space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol <=> space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate 
// R02003: Geranyl_space_diphosphate Isopentenyl_space_diphosphate <=> trans_space_trans_minus_Farnesyl_space_diphosphate 
// R05883: space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate <=> space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate 
// R01658: Dimethylallyl_space_diphosphate Isopentenyl_space_diphosphate <=> Geranyl_space_diphosphate 
// R05884: space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate <=> Isopentenyl_space_diphosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_17_space_1_space_2 = 0 M;
  real E2_space_5_space_1_space_10 = 0 M;
  real E1_space_17_space_4_space_3 = 0 M;
  real E4_space_6_space_1_space_12 = 0 M;
  real E2_space_7_space_1_space_148 = 0 M;
  real E2_space_7_space_7_space_60 = 0 M;
  real E1_space_1_space_1_space_267 = 0 M;
  real Dimethylallyl_space_diphosphate(time) M;
  real Geranyl_space_diphosphate(time) M;
  real Isopentenyl_space_diphosphate(time) M;
  real space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate(time) M;
  real trans_space_trans_minus_Farnesyl_space_diphosphate(time) M;
  real space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate(time) M;
  real space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol(time) M;
  real space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol(time) M;
  real space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate(time) M;
  real space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate(time) M;
  real R05634(time) katal;
  extern real R05634.kf;
  extern real R05634.kb;
  real R05633(time) katal;
  extern real R05633.kf;
  extern real R05633.kb;
  real R05688(time) katal;
  extern real R05688.kf;
  extern real R05688.kb;
  real R05637(time) katal;
  extern real R05637.kf;
  extern real R05637.kb;
  real R02003(time) katal;
  extern real R02003.kf;
  extern real R02003.kb;
  real R05883(time) katal;
  extern real R05883.kf;
  extern real R05883.kb;
  real R01658(time) katal;
  extern real R01658.kf;
  extern real R01658.kb;
  real R05884(time) katal;
  extern real R05884.kf;
  extern real R05884.kb;

  // equations
  when (time=time.min) Dimethylallyl_space_diphosphate = 0;
  Dimethylallyl_space_diphosphate:time = (-1*R01658)/uVol;
  when (time=time.min) Geranyl_space_diphosphate = 0;
  Geranyl_space_diphosphate:time = (-1*R02003 + R01658)/uVol;
  when (time=time.min) Isopentenyl_space_diphosphate = 0;
  Isopentenyl_space_diphosphate:time = (-1*R02003 + -1*R01658 + R05884)/uVol;
  when (time=time.min) space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate = 0;
  space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate:time = (R05883 + -1*R05884)/uVol;
  when (time=time.min) trans_space_trans_minus_Farnesyl_space_diphosphate = 0;
  trans_space_trans_minus_Farnesyl_space_diphosphate:time = (R02003)/uVol;
  when (time=time.min) space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate = 0;
  space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate:time = (R05637 + -1*R05883)/uVol;
  when (time=time.min) space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol = 0;
  space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol:time = (R05634 + -1*R05637)/uVol;
  when (time=time.min) space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol = 0;
  space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol:time = (-1*R05634 + R05633)/uVol;
  when (time=time.min) space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate = 0;
  space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate:time = (-1*R05633 + -1*R05688)/uVol;
  when (time=time.min) space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate = 0;
  space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate:time = (R05688)/uVol;
  R05634 = R05634.kf*space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol - R05634.kb*space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol;
  R05633 = R05633.kf*space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate - R05633.kb*space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol;
  R05688 = R05688.kf*space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate - R05688.kb*space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate;
  R05637 = R05637.kf*space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol - R05637.kb*space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate;
  R02003 = R02003.kf*Geranyl_space_diphosphate*Isopentenyl_space_diphosphate - R02003.kb*trans_space_trans_minus_Farnesyl_space_diphosphate;
  R05883 = R05883.kf*space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate - R05883.kb*space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate;
  R01658 = R01658.kf*Dimethylallyl_space_diphosphate*Isopentenyl_space_diphosphate - R01658.kb*Geranyl_space_diphosphate;
  R05884 = R05884.kf*space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate - R05884.kb*Isopentenyl_space_diphosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_17_space_1_space_2.sbmlRole="species";
  E1_space_17_space_1_space_2.sbmlCompartment="uVol";
  E2_space_5_space_1_space_10.sbmlRole="species";
  E2_space_5_space_1_space_10.sbmlCompartment="uVol";
  E1_space_17_space_4_space_3.sbmlRole="species";
  E1_space_17_space_4_space_3.sbmlCompartment="uVol";
  E4_space_6_space_1_space_12.sbmlRole="species";
  E4_space_6_space_1_space_12.sbmlCompartment="uVol";
  E2_space_7_space_1_space_148.sbmlRole="species";
  E2_space_7_space_1_space_148.sbmlCompartment="uVol";
  E2_space_7_space_7_space_60.sbmlRole="species";
  E2_space_7_space_7_space_60.sbmlCompartment="uVol";
  E1_space_1_space_1_space_267.sbmlRole="species";
  E1_space_1_space_1_space_267.sbmlCompartment="uVol";
  Dimethylallyl_space_diphosphate.sbmlRole="species";
  Dimethylallyl_space_diphosphate.sbmlCompartment="uVol";
  Geranyl_space_diphosphate.sbmlRole="species";
  Geranyl_space_diphosphate.sbmlCompartment="uVol";
  Isopentenyl_space_diphosphate.sbmlRole="species";
  Isopentenyl_space_diphosphate.sbmlCompartment="uVol";
  space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate.sbmlRole="species";
  space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate.sbmlCompartment="uVol";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlRole="species";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlCompartment="uVol";
  space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate.sbmlRole="species";
  space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate.sbmlCompartment="uVol";
  space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlRole="species";
  space_2_minus_Phospho_minus_4_minus_space_cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlCompartment="uVol";
  space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlRole="species";
  space_4_minus_space_Cytidine_space_5_space_minus_diphospho_space_minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlCompartment="uVol";
  space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate.sbmlRole="species";
  space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate.sbmlCompartment="uVol";
  space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate.sbmlRole="species";
  space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  R05634.sbmlRole="rate";
  R05634.kf.sbmlRole="rate";
  R05634.kb.sbmlRole="rate";
  R05633.sbmlRole="rate";
  R05633.kf.sbmlRole="rate";
  R05633.kb.sbmlRole="rate";
  R05688.sbmlRole="rate";
  R05688.kf.sbmlRole="rate";
  R05688.kb.sbmlRole="rate";
  R05637.sbmlRole="rate";
  R05637.kf.sbmlRole="rate";
  R05637.kb.sbmlRole="rate";
  R02003.sbmlRole="rate";
  R02003.kf.sbmlRole="rate";
  R02003.kb.sbmlRole="rate";
  R05883.sbmlRole="rate";
  R05883.kf.sbmlRole="rate";
  R05883.kb.sbmlRole="rate";
  R01658.sbmlRole="rate";
  R01658.kf.sbmlRole="rate";
  R01658.kb.sbmlRole="rate";
  R05884.sbmlRole="rate";
  R05884.kf.sbmlRole="rate";
  R05884.kb.sbmlRole="rate";
}