// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04125: S_minus_Aminomethyldihydrolipoylprotein Tetrahydrofolate <=> Dihydrolipoylprotein space_5_space_10_minus_Methylenetetrahydrofolate NH3 
// R03662: L_minus_Serine <=> L_minus_Seryl_minus_tRNA_space_Ser_space_ 
// R02055: Phosphatidylserine <=> Phosphatidylethanolamine 
// R00371: Glycine => L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid 
// R03654: Glycine <=> Glycyl_minus_tRNA_space_Gly_space_ 
// R00945: space_5_space_10_minus_Methylenetetrahydrofolate Glycine => L_minus_Serine 
// R02291: L_minus_Aspartate_space_4_minus_semialdehyde <=> space_4_minus_Phospho_minus_L_minus_aspartate 
// R00830: Glycine <=> space_5_minus_Aminolevulinate 
// R01800: L_minus_Serine <=> Phosphatidylserine 
// R03815: Dihydrolipoylprotein <=> Lipoylprotein 
// R03663: L_minus_Threonine <=> L_minus_Threonyl_minus_tRNA_space_Thr_space_ 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_1_space_1_space_65 = 0 M;
  real E6_space_1_space_1_space_3 = 0 M;
  real E6_space_1_space_1_space_14 = 0 M;
  real E2_space_7_space_8_space_8 = 0 M;
  real E6_space_1_space_1_space_11 = 0 M;
  real E2_space_1_space_2_space_1 = 0 M;
  real E2_space_3_space_1_space_37 = 0 M;
  real E1_space_2_space_1_space_11 = 0 M;
  real E2_space_1_space_2_space_10 = 0 M;
  real E1_space_8_space_1_space_4 = 0 M;
  real Dihydrolipoylprotein(time) M;
  real Lipoylprotein(time) M;
  real L_minus_Threonyl_minus_tRNA_space_Thr_space_(time) M;
  real Phosphatidylethanolamine(time) M;
  real Glycyl_minus_tRNA_space_Gly_space_(time) M;
  real Phosphatidylserine(time) M;
  real L_minus_Seryl_minus_tRNA_space_Ser_space_(time) M;
  real Glycine(time) M;
  real L_minus_Serine(time) M;
  real L_minus_Threonine(time) M;
  real space_4_minus_Phospho_minus_L_minus_aspartate(time) M;
  real L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid(time) M;
  real L_minus_Aspartate_space_4_minus_semialdehyde(time) M;
  real space_5_minus_Aminolevulinate(time) M;
  real NH3(time) M;
  real Tetrahydrofolate(time) M;
  real space_5_space_10_minus_Methylenetetrahydrofolate(time) M;
  real S_minus_Aminomethyldihydrolipoylprotein(time) M;
  real R04125(time) katal;
  extern real R04125.kf;
  extern real R04125.kb;
  real R03662(time) katal;
  extern real R03662.kf;
  extern real R03662.kb;
  real R02055(time) katal;
  extern real R02055.kf;
  extern real R02055.kb;
  real R00371(time) katal;
  extern real R00371.kf;
  extern real R00371.kb;
  real R03654(time) katal;
  extern real R03654.kf;
  extern real R03654.kb;
  real R00945(time) katal;
  extern real R00945.kf;
  extern real R00945.kb;
  real R02291(time) katal;
  extern real R02291.kf;
  extern real R02291.kb;
  real R00830(time) katal;
  extern real R00830.kf;
  extern real R00830.kb;
  real R01800(time) katal;
  extern real R01800.kf;
  extern real R01800.kb;
  real R03815(time) katal;
  extern real R03815.kf;
  extern real R03815.kb;
  real R03663(time) katal;
  extern real R03663.kf;
  extern real R03663.kb;

  // equations
  when (time=time.min) Dihydrolipoylprotein = 0;
  Dihydrolipoylprotein:time = (R04125 + -1*R03815)/uVol;
  when (time=time.min) Lipoylprotein = 0;
  Lipoylprotein:time = (R03815)/uVol;
  when (time=time.min) L_minus_Threonyl_minus_tRNA_space_Thr_space_ = 0;
  L_minus_Threonyl_minus_tRNA_space_Thr_space_:time = (R03663)/uVol;
  when (time=time.min) Phosphatidylethanolamine = 0;
  Phosphatidylethanolamine:time = (R02055)/uVol;
  when (time=time.min) Glycyl_minus_tRNA_space_Gly_space_ = 0;
  Glycyl_minus_tRNA_space_Gly_space_:time = (R03654)/uVol;
  when (time=time.min) Phosphatidylserine = 0;
  Phosphatidylserine:time = (-1*R02055 + R01800)/uVol;
  when (time=time.min) L_minus_Seryl_minus_tRNA_space_Ser_space_ = 0;
  L_minus_Seryl_minus_tRNA_space_Ser_space_:time = (R03662)/uVol;
  when (time=time.min) Glycine = 0;
  Glycine:time = (-1*R00371 + -1*R03654 + -1*R00945 + -1*R00830)/uVol;
  when (time=time.min) L_minus_Serine = 0;
  L_minus_Serine:time = (-1*R03662 + R00945 + -1*R01800)/uVol;
  when (time=time.min) L_minus_Threonine = 0;
  L_minus_Threonine:time = (-1*R03663)/uVol;
  when (time=time.min) space_4_minus_Phospho_minus_L_minus_aspartate = 0;
  space_4_minus_Phospho_minus_L_minus_aspartate:time = (R02291)/uVol;
  when (time=time.min) L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid = 0;
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid:time = (R00371)/uVol;
  when (time=time.min) L_minus_Aspartate_space_4_minus_semialdehyde = 0;
  L_minus_Aspartate_space_4_minus_semialdehyde:time = (-1*R02291)/uVol;
  when (time=time.min) space_5_minus_Aminolevulinate = 0;
  space_5_minus_Aminolevulinate:time = (R00830)/uVol;
  when (time=time.min) NH3 = 0;
  NH3:time = (R04125)/uVol;
  when (time=time.min) Tetrahydrofolate = 0;
  Tetrahydrofolate:time = (-1*R04125)/uVol;
  when (time=time.min) space_5_space_10_minus_Methylenetetrahydrofolate = 0;
  space_5_space_10_minus_Methylenetetrahydrofolate:time = (R04125 + -1*R00945)/uVol;
  when (time=time.min) S_minus_Aminomethyldihydrolipoylprotein = 0;
  S_minus_Aminomethyldihydrolipoylprotein:time = (-1*R04125)/uVol;
  R04125 = R04125.kf*S_minus_Aminomethyldihydrolipoylprotein*Tetrahydrofolate - R04125.kb*Dihydrolipoylprotein*space_5_space_10_minus_Methylenetetrahydrofolate*NH3;
  R03662 = R03662.kf*L_minus_Serine - R03662.kb*L_minus_Seryl_minus_tRNA_space_Ser_space_;
  R02055 = R02055.kf*Phosphatidylserine - R02055.kb*Phosphatidylethanolamine;
  R00371 = R00371.kf*Glycine - R00371.kb*L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid;
  R03654 = R03654.kf*Glycine - R03654.kb*Glycyl_minus_tRNA_space_Gly_space_;
  R00945 = R00945.kf*space_5_space_10_minus_Methylenetetrahydrofolate*Glycine - R00945.kb*L_minus_Serine;
  R02291 = R02291.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R02291.kb*space_4_minus_Phospho_minus_L_minus_aspartate;
  R00830 = R00830.kf*Glycine - R00830.kb*space_5_minus_Aminolevulinate;
  R01800 = R01800.kf*L_minus_Serine - R01800.kb*Phosphatidylserine;
  R03815 = R03815.kf*Dihydrolipoylprotein - R03815.kb*Lipoylprotein;
  R03663 = R03663.kf*L_minus_Threonine - R03663.kb*L_minus_Threonyl_minus_tRNA_space_Thr_space_;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_1_space_1_space_65.sbmlRole="species";
  E4_space_1_space_1_space_65.sbmlCompartment="uVol";
  E6_space_1_space_1_space_3.sbmlRole="species";
  E6_space_1_space_1_space_3.sbmlCompartment="uVol";
  E6_space_1_space_1_space_14.sbmlRole="species";
  E6_space_1_space_1_space_14.sbmlCompartment="uVol";
  E2_space_7_space_8_space_8.sbmlRole="species";
  E2_space_7_space_8_space_8.sbmlCompartment="uVol";
  E6_space_1_space_1_space_11.sbmlRole="species";
  E6_space_1_space_1_space_11.sbmlCompartment="uVol";
  E2_space_1_space_2_space_1.sbmlRole="species";
  E2_space_1_space_2_space_1.sbmlCompartment="uVol";
  E2_space_3_space_1_space_37.sbmlRole="species";
  E2_space_3_space_1_space_37.sbmlCompartment="uVol";
  E1_space_2_space_1_space_11.sbmlRole="species";
  E1_space_2_space_1_space_11.sbmlCompartment="uVol";
  E2_space_1_space_2_space_10.sbmlRole="species";
  E2_space_1_space_2_space_10.sbmlCompartment="uVol";
  E1_space_8_space_1_space_4.sbmlRole="species";
  E1_space_8_space_1_space_4.sbmlCompartment="uVol";
  Dihydrolipoylprotein.sbmlRole="species";
  Dihydrolipoylprotein.sbmlCompartment="uVol";
  Lipoylprotein.sbmlRole="species";
  Lipoylprotein.sbmlCompartment="uVol";
  L_minus_Threonyl_minus_tRNA_space_Thr_space_.sbmlRole="species";
  L_minus_Threonyl_minus_tRNA_space_Thr_space_.sbmlCompartment="uVol";
  Phosphatidylethanolamine.sbmlRole="species";
  Phosphatidylethanolamine.sbmlCompartment="uVol";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlRole="species";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlCompartment="uVol";
  Phosphatidylserine.sbmlRole="species";
  Phosphatidylserine.sbmlCompartment="uVol";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlRole="species";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlCompartment="uVol";
  Glycine.sbmlRole="species";
  Glycine.sbmlCompartment="uVol";
  L_minus_Serine.sbmlRole="species";
  L_minus_Serine.sbmlCompartment="uVol";
  L_minus_Threonine.sbmlRole="species";
  L_minus_Threonine.sbmlCompartment="uVol";
  space_4_minus_Phospho_minus_L_minus_aspartate.sbmlRole="species";
  space_4_minus_Phospho_minus_L_minus_aspartate.sbmlCompartment="uVol";
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid.sbmlRole="species";
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid.sbmlCompartment="uVol";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlRole="species";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlCompartment="uVol";
  space_5_minus_Aminolevulinate.sbmlRole="species";
  space_5_minus_Aminolevulinate.sbmlCompartment="uVol";
  NH3.sbmlRole="species";
  NH3.sbmlCompartment="uVol";
  Tetrahydrofolate.sbmlRole="species";
  Tetrahydrofolate.sbmlCompartment="uVol";
  space_5_space_10_minus_Methylenetetrahydrofolate.sbmlRole="species";
  space_5_space_10_minus_Methylenetetrahydrofolate.sbmlCompartment="uVol";
  S_minus_Aminomethyldihydrolipoylprotein.sbmlRole="species";
  S_minus_Aminomethyldihydrolipoylprotein.sbmlCompartment="uVol";
  R04125.sbmlRole="rate";
  R04125.kf.sbmlRole="rate";
  R04125.kb.sbmlRole="rate";
  R03662.sbmlRole="rate";
  R03662.kf.sbmlRole="rate";
  R03662.kb.sbmlRole="rate";
  R02055.sbmlRole="rate";
  R02055.kf.sbmlRole="rate";
  R02055.kb.sbmlRole="rate";
  R00371.sbmlRole="rate";
  R00371.kf.sbmlRole="rate";
  R00371.kb.sbmlRole="rate";
  R03654.sbmlRole="rate";
  R03654.kf.sbmlRole="rate";
  R03654.kb.sbmlRole="rate";
  R00945.sbmlRole="rate";
  R00945.kf.sbmlRole="rate";
  R00945.kb.sbmlRole="rate";
  R02291.sbmlRole="rate";
  R02291.kf.sbmlRole="rate";
  R02291.kb.sbmlRole="rate";
  R00830.sbmlRole="rate";
  R00830.kf.sbmlRole="rate";
  R00830.kb.sbmlRole="rate";
  R01800.sbmlRole="rate";
  R01800.kf.sbmlRole="rate";
  R01800.kb.sbmlRole="rate";
  R03815.sbmlRole="rate";
  R03815.kf.sbmlRole="rate";
  R03815.kb.sbmlRole="rate";
  R03663.sbmlRole="rate";
  R03663.kf.sbmlRole="rate";
  R03663.kb.sbmlRole="rate";
}