// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03294: trans_minus_4_minus_Hydroxy_minus_L_minus_proline <=> L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate 
// R03295: trans_minus_4_minus_Hydroxy_minus_L_minus_proline <=> L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate 
// R00245: L_minus_Glutamate_space_5_minus_semialdehyde => L_minus_Glutamate 
// R00707: space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate <=> L_minus_Glutamate 
// R03661: L_minus_Proline <=> L_minus_Prolyl_minus_tRNA_space_Pro_space_ 
// R01253: L_minus_Proline <=> space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate 
// R04444: L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate <=> L_minus_erythro_minus_4_minus_Hydroxyglutamate 
// R05051: L_minus_4_minus_Hydroxyglutamate_space_semialdehyde => L_minus_erythro_minus_4_minus_Hydroxyglutamate 
// R03646: L_minus_Arginine => L_minus_Arginyl_minus_tRNA_space_Arg_space_ 
// R05052: L_minus_erythro_minus_4_minus_Hydroxyglutamate <=> D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_6_space_1_space_1 = 0 M;
  real E6_space_1_space_1_space_15 = 0 M;
  real E1_space_5_space_1_space_12 = 0 M;
  real E1_space_5_space_99_space_8 = 0 M;
  real E6_space_1_space_1_space_19 = 0 M;
  real D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate(time) M;
  real L_minus_Glutamate(time) M;
  real L_minus_Prolyl_minus_tRNA_space_Pro_space_(time) M;
  real L_minus_erythro_minus_4_minus_Hydroxyglutamate(time) M;
  real L_minus_Glutamate_space_5_minus_semialdehyde(time) M;
  real space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate(time) M;
  real L_minus_Proline(time) M;
  real trans_minus_4_minus_Hydroxy_minus_L_minus_proline(time) M;
  real L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate(time) M;
  real L_minus_4_minus_Hydroxyglutamate_space_semialdehyde(time) M;
  real L_minus_Arginine(time) M;
  real L_minus_Arginyl_minus_tRNA_space_Arg_space_(time) M;
  real R03294(time) katal;
  extern real R03294.kf;
  extern real R03294.kb;
  real R03295(time) katal;
  extern real R03295.kf;
  extern real R03295.kb;
  real R00245(time) katal;
  extern real R00245.kf;
  extern real R00245.kb;
  real R00707(time) katal;
  extern real R00707.kf;
  extern real R00707.kb;
  real R03661(time) katal;
  extern real R03661.kf;
  extern real R03661.kb;
  real R01253(time) katal;
  extern real R01253.kf;
  extern real R01253.kb;
  real R04444(time) katal;
  extern real R04444.kf;
  extern real R04444.kb;
  real R05051(time) katal;
  extern real R05051.kf;
  extern real R05051.kb;
  real R03646(time) katal;
  extern real R03646.kf;
  extern real R03646.kb;
  real R05052(time) katal;
  extern real R05052.kf;
  extern real R05052.kb;

  // equations
  when (time=time.min) D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate = 0;
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate:time = (R05052)/uVol;
  when (time=time.min) L_minus_Glutamate = 0;
  L_minus_Glutamate:time = (R00245 + R00707)/uVol;
  when (time=time.min) L_minus_Prolyl_minus_tRNA_space_Pro_space_ = 0;
  L_minus_Prolyl_minus_tRNA_space_Pro_space_:time = (R03661)/uVol;
  when (time=time.min) L_minus_erythro_minus_4_minus_Hydroxyglutamate = 0;
  L_minus_erythro_minus_4_minus_Hydroxyglutamate:time = (R04444 + R05051 + -1*R05052)/uVol;
  when (time=time.min) L_minus_Glutamate_space_5_minus_semialdehyde = 0;
  L_minus_Glutamate_space_5_minus_semialdehyde:time = (-1*R00245)/uVol;
  when (time=time.min) space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate = 0;
  space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate:time = (-1*R00707 + R01253)/uVol;
  when (time=time.min) L_minus_Proline = 0;
  L_minus_Proline:time = (-1*R03661 + -1*R01253)/uVol;
  when (time=time.min) trans_minus_4_minus_Hydroxy_minus_L_minus_proline = 0;
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline:time = (-1*R03294 + -1*R03295)/uVol;
  when (time=time.min) L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate = 0;
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate:time = (R03294 + R03295 + -1*R04444)/uVol;
  when (time=time.min) L_minus_4_minus_Hydroxyglutamate_space_semialdehyde = 0;
  L_minus_4_minus_Hydroxyglutamate_space_semialdehyde:time = (-1*R05051)/uVol;
  when (time=time.min) L_minus_Arginine = 0;
  L_minus_Arginine:time = (-1*R03646)/uVol;
  when (time=time.min) L_minus_Arginyl_minus_tRNA_space_Arg_space_ = 0;
  L_minus_Arginyl_minus_tRNA_space_Arg_space_:time = (R03646)/uVol;
  R03294 = R03294.kf*trans_minus_4_minus_Hydroxy_minus_L_minus_proline - R03294.kb*L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate;
  R03295 = R03295.kf*trans_minus_4_minus_Hydroxy_minus_L_minus_proline - R03295.kb*L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate;
  R00245 = R00245.kf*L_minus_Glutamate_space_5_minus_semialdehyde - R00245.kb*L_minus_Glutamate;
  R00707 = R00707.kf*space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate - R00707.kb*L_minus_Glutamate;
  R03661 = R03661.kf*L_minus_Proline - R03661.kb*L_minus_Prolyl_minus_tRNA_space_Pro_space_;
  R01253 = R01253.kf*L_minus_Proline - R01253.kb*space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate;
  R04444 = R04444.kf*L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate - R04444.kb*L_minus_erythro_minus_4_minus_Hydroxyglutamate;
  R05051 = R05051.kf*L_minus_4_minus_Hydroxyglutamate_space_semialdehyde - R05051.kb*L_minus_erythro_minus_4_minus_Hydroxyglutamate;
  R03646 = R03646.kf*L_minus_Arginine - R03646.kb*L_minus_Arginyl_minus_tRNA_space_Arg_space_;
  R05052 = R05052.kf*L_minus_erythro_minus_4_minus_Hydroxyglutamate - R05052.kb*D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_15.sbmlRole="species";
  E6_space_1_space_1_space_15.sbmlCompartment="uVol";
  E1_space_5_space_1_space_12.sbmlRole="species";
  E1_space_5_space_1_space_12.sbmlCompartment="uVol";
  E1_space_5_space_99_space_8.sbmlRole="species";
  E1_space_5_space_99_space_8.sbmlCompartment="uVol";
  E6_space_1_space_1_space_19.sbmlRole="species";
  E6_space_1_space_1_space_19.sbmlCompartment="uVol";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlRole="species";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlCompartment="uVol";
  L_minus_Glutamate.sbmlRole="species";
  L_minus_Glutamate.sbmlCompartment="uVol";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlRole="species";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlCompartment="uVol";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlRole="species";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlCompartment="uVol";
  L_minus_Glutamate_space_5_minus_semialdehyde.sbmlRole="species";
  L_minus_Glutamate_space_5_minus_semialdehyde.sbmlCompartment="uVol";
  space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate.sbmlRole="species";
  space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate.sbmlCompartment="uVol";
  L_minus_Proline.sbmlRole="species";
  L_minus_Proline.sbmlCompartment="uVol";
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline.sbmlRole="species";
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline.sbmlCompartment="uVol";
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate.sbmlRole="species";
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate.sbmlCompartment="uVol";
  L_minus_4_minus_Hydroxyglutamate_space_semialdehyde.sbmlRole="species";
  L_minus_4_minus_Hydroxyglutamate_space_semialdehyde.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlRole="species";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlCompartment="uVol";
  R03294.sbmlRole="rate";
  R03294.kf.sbmlRole="rate";
  R03294.kb.sbmlRole="rate";
  R03295.sbmlRole="rate";
  R03295.kf.sbmlRole="rate";
  R03295.kb.sbmlRole="rate";
  R00245.sbmlRole="rate";
  R00245.kf.sbmlRole="rate";
  R00245.kb.sbmlRole="rate";
  R00707.sbmlRole="rate";
  R00707.kf.sbmlRole="rate";
  R00707.kb.sbmlRole="rate";
  R03661.sbmlRole="rate";
  R03661.kf.sbmlRole="rate";
  R03661.kb.sbmlRole="rate";
  R01253.sbmlRole="rate";
  R01253.kf.sbmlRole="rate";
  R01253.kb.sbmlRole="rate";
  R04444.sbmlRole="rate";
  R04444.kf.sbmlRole="rate";
  R04444.kb.sbmlRole="rate";
  R05051.sbmlRole="rate";
  R05051.kf.sbmlRole="rate";
  R05051.kb.sbmlRole="rate";
  R03646.sbmlRole="rate";
  R03646.kf.sbmlRole="rate";
  R03646.kb.sbmlRole="rate";
  R05052.sbmlRole="rate";
  R05052.kf.sbmlRole="rate";
  R05052.kb.sbmlRole="rate";
}