// This model generated automatically from SBML
// WARNING: Renamed variable _space_3_minus_Phospho_minus_D_minus_glycerate to xxx_space_3_minus_Phospho_minus_D_minus_glycerate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Phosphonooxypyruvate to xxx_space_3_minus_Phosphonooxypyruvate due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Phospho_minus_L_minus_aspartate to xxx_space_4_minus_Phospho_minus_L_minus_aspartate due to JSim namespace restrictions
// WARNING: Renamed variable _space_5_space_10_minus_Methylenetetrahydrofolate to xxx_space_5_space_10_minus_Methylenetetrahydrofolate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01771: L_minus_Homoserine <=> O_minus_Phospho_minus_L_minus_homoserine 
// R02565: Betaine_space_aldehyde <=> Betaine 
// R00220: L_minus_Serine => Pyruvate 
// R00582: O_minus_Phospho_minus_L_minus_serine <=> L_minus_Serine 
// R01773: L_minus_Homoserine => L_minus_Aspartate_space_4_minus_semialdehyde 
// R06171: Glycine => L_minus_Allothreonine 
// R03425: Glycine Lipoylprotein <=> S_minus_Aminomethyldihydrolipoylprotein CO2 
// R03815: Dihydrolipoylprotein <=> Lipoylprotein 
// R01514: D_minus_Glycerate => _space_3_minus_Phospho_minus_D_minus_glycerate 
// R03662: L_minus_Serine <=> L_minus_Seryl_minus_tRNA_space_Ser_space_ 
// R00371: Glycine => L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid 
// R03654: Glycine <=> Glycyl_minus_tRNA_space_Gly_space_ 
// R00945: _space_5_space_10_minus_Methylenetetrahydrofolate Glycine => L_minus_Serine 
// R00751: L_minus_Threonine => Glycine 
// R02291: L_minus_Aspartate_space_4_minus_semialdehyde <=> _space_4_minus_Phospho_minus_L_minus_aspartate 
// R04173: O_minus_Phospho_minus_L_minus_serine => _space_3_minus_Phosphonooxypyruvate 
// R01466: O_minus_Phospho_minus_L_minus_homoserine <=> L_minus_Threonine 
// R02529: Aminoacetone <=> Methylglyoxal 
// R02567: Betaine_space_aldehyde <=> Betaine 
// R01025: Choline <=> Betaine_space_aldehyde 
// R00610: Sarcosine <=> Glycine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_99_space_1 = 0 M;
  real E1_space_2_space_1_space_8 = 0 M;
  real E2_space_7_space_1_space_31 = 0 M;
  real E4_space_1_space_2_space_5 = 0 M;
  real E6_space_1_space_1_space_14 = 0 M;
  real E1_space_5_space_3_space_1 = 0 M;
  real E2_space_6_space_1_space_52 = 0 M;
  real E6_space_1_space_1_space_11 = 0 M;
  real E3_space_1_space_3_space_3 = 0 M;
  real E2_space_1_space_2_space_1 = 0 M;
  real E4_space_2_space_3_space_1 = 0 M;
  real E2_space_3_space_1_space_29 = 0 M;
  real E4_space_3_space_1_space_17 = 0 M;
  real E1_space_2_space_1_space_11 = 0 M;
  real E2_space_7_space_1_space_39 = 0 M;
  real E1_space_4_space_4_space_2 = 0 M;
  real E1_space_1_space_1_space_3 = 0 M;
  real E1_space_4_space_3_space_6 = 0 M;
  real E1_space_8_space_1_space_4 = 0 M;
  real Dihydrolipoylprotein(time) M;
  real Lipoylprotein(time) M;
  real D_minus_Glycerate(time) M;
  real Choline(time) M;
  real Betaine_space_aldehyde(time) M;
  real Betaine(time) M;
  real xxx_space_3_minus_Phospho_minus_D_minus_glycerate(time) M;
  real L_minus_Allothreonine(time) M;
  real xxx_space_3_minus_Phosphonooxypyruvate(time) M;
  real Glycyl_minus_tRNA_space_Gly_space_(time) M;
  real Sarcosine(time) M;
  real L_minus_Seryl_minus_tRNA_space_Ser_space_(time) M;
  real O_minus_Phospho_minus_L_minus_serine(time) M;
  real Glycine(time) M;
  real L_minus_Serine(time) M;
  real L_minus_Threonine(time) M;
  real xxx_space_4_minus_Phospho_minus_L_minus_aspartate(time) M;
  real O_minus_Phospho_minus_L_minus_homoserine(time) M;
  real L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid(time) M;
  real Pyruvate(time) M;
  real L_minus_Homoserine(time) M;
  real L_minus_Aspartate_space_4_minus_semialdehyde(time) M;
  real CO2(time) M;
  real Aminoacetone(time) M;
  real Methylglyoxal(time) M;
  real xxx_space_5_space_10_minus_Methylenetetrahydrofolate(time) M;
  real S_minus_Aminomethyldihydrolipoylprotein(time) M;
  real R01771(time) katal;
  extern real R01771.kf;
  extern real R01771.kb;
  real R02565(time) katal;
  extern real R02565.kf;
  extern real R02565.kb;
  real R00220(time) katal;
  extern real R00220.kf;
  extern real R00220.kb;
  real R00582(time) katal;
  extern real R00582.kf;
  extern real R00582.kb;
  real R01773(time) katal;
  extern real R01773.kf;
  extern real R01773.kb;
  real R06171(time) katal;
  extern real R06171.kf;
  extern real R06171.kb;
  real R03425(time) katal;
  extern real R03425.kf;
  extern real R03425.kb;
  real R03815(time) katal;
  extern real R03815.kf;
  extern real R03815.kb;
  real R01514(time) katal;
  extern real R01514.kf;
  extern real R01514.kb;
  real R03662(time) katal;
  extern real R03662.kf;
  extern real R03662.kb;
  real R00371(time) katal;
  extern real R00371.kf;
  extern real R00371.kb;
  real R03654(time) katal;
  extern real R03654.kf;
  extern real R03654.kb;
  real R00945(time) katal;
  extern real R00945.kf;
  extern real R00945.kb;
  real R00751(time) katal;
  extern real R00751.kf;
  extern real R00751.kb;
  real R02291(time) katal;
  extern real R02291.kf;
  extern real R02291.kb;
  real R04173(time) katal;
  extern real R04173.kf;
  extern real R04173.kb;
  real R01466(time) katal;
  extern real R01466.kf;
  extern real R01466.kb;
  real R02529(time) katal;
  extern real R02529.kf;
  extern real R02529.kb;
  real R02567(time) katal;
  extern real R02567.kf;
  extern real R02567.kb;
  real R01025(time) katal;
  extern real R01025.kf;
  extern real R01025.kb;
  real R00610(time) katal;
  extern real R00610.kf;
  extern real R00610.kb;

  // equations
  when (time=time.min) Dihydrolipoylprotein = 0;
  (Dihydrolipoylprotein*uVol):time = -1*R03815;
  when (time=time.min) Lipoylprotein = 0;
  (Lipoylprotein*uVol):time = -1*R03425 + R03815;
  when (time=time.min) D_minus_Glycerate = 0;
  (D_minus_Glycerate*uVol):time = -1*R01514;
  when (time=time.min) Choline = 0;
  (Choline*uVol):time = -1*R01025;
  when (time=time.min) Betaine_space_aldehyde = 0;
  (Betaine_space_aldehyde*uVol):time = -1*R02565 + -1*R02567 + R01025;
  when (time=time.min) Betaine = 0;
  (Betaine*uVol):time = R02565 + R02567;
  when (time=time.min) xxx_space_3_minus_Phospho_minus_D_minus_glycerate = 0;
  (xxx_space_3_minus_Phospho_minus_D_minus_glycerate*uVol):time = R01514;
  when (time=time.min) L_minus_Allothreonine = 0;
  (L_minus_Allothreonine*uVol):time = R06171;
  when (time=time.min) xxx_space_3_minus_Phosphonooxypyruvate = 0;
  (xxx_space_3_minus_Phosphonooxypyruvate*uVol):time = R04173;
  when (time=time.min) Glycyl_minus_tRNA_space_Gly_space_ = 0;
  (Glycyl_minus_tRNA_space_Gly_space_*uVol):time = R03654;
  when (time=time.min) Sarcosine = 0;
  (Sarcosine*uVol):time = -1*R00610;
  when (time=time.min) L_minus_Seryl_minus_tRNA_space_Ser_space_ = 0;
  (L_minus_Seryl_minus_tRNA_space_Ser_space_*uVol):time = R03662;
  when (time=time.min) O_minus_Phospho_minus_L_minus_serine = 0;
  (O_minus_Phospho_minus_L_minus_serine*uVol):time = -1*R00582 + -1*R04173;
  when (time=time.min) Glycine = 0;
  (Glycine*uVol):time = -1*R06171 + -1*R03425 + -1*R00371 + -1*R03654 + -1*R00945 + R00751 + R00610;
  when (time=time.min) L_minus_Serine = 0;
  (L_minus_Serine*uVol):time = -1*R00220 + R00582 + -1*R03662 + R00945;
  when (time=time.min) L_minus_Threonine = 0;
  (L_minus_Threonine*uVol):time = -1*R00751 + R01466;
  when (time=time.min) xxx_space_4_minus_Phospho_minus_L_minus_aspartate = 0;
  (xxx_space_4_minus_Phospho_minus_L_minus_aspartate*uVol):time = R02291;
  when (time=time.min) O_minus_Phospho_minus_L_minus_homoserine = 0;
  (O_minus_Phospho_minus_L_minus_homoserine*uVol):time = R01771 + -1*R01466;
  when (time=time.min) L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid = 0;
  (L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid*uVol):time = R00371;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = R00220;
  when (time=time.min) L_minus_Homoserine = 0;
  (L_minus_Homoserine*uVol):time = -1*R01771 + -1*R01773;
  when (time=time.min) L_minus_Aspartate_space_4_minus_semialdehyde = 0;
  (L_minus_Aspartate_space_4_minus_semialdehyde*uVol):time = R01773 + -1*R02291;
  when (time=time.min) CO2 = 0;
  (CO2*uVol):time = R03425;
  when (time=time.min) Aminoacetone = 0;
  (Aminoacetone*uVol):time = -1*R02529;
  when (time=time.min) Methylglyoxal = 0;
  (Methylglyoxal*uVol):time = R02529;
  when (time=time.min) xxx_space_5_space_10_minus_Methylenetetrahydrofolate = 0;
  (xxx_space_5_space_10_minus_Methylenetetrahydrofolate*uVol):time = -1*R00945;
  when (time=time.min) S_minus_Aminomethyldihydrolipoylprotein = 0;
  (S_minus_Aminomethyldihydrolipoylprotein*uVol):time = R03425;
  R01771 = R01771.kf*L_minus_Homoserine - R01771.kb*O_minus_Phospho_minus_L_minus_homoserine;
  R02565 = R02565.kf*Betaine_space_aldehyde - R02565.kb*Betaine;
  R00220 = R00220.kf*L_minus_Serine - R00220.kb*Pyruvate;
  R00582 = R00582.kf*O_minus_Phospho_minus_L_minus_serine - R00582.kb*L_minus_Serine;
  R01773 = R01773.kf*L_minus_Homoserine - R01773.kb*L_minus_Aspartate_space_4_minus_semialdehyde;
  R06171 = R06171.kf*Glycine - R06171.kb*L_minus_Allothreonine;
  R03425 = R03425.kf*Glycine*Lipoylprotein - R03425.kb*S_minus_Aminomethyldihydrolipoylprotein*CO2;
  R03815 = R03815.kf*Dihydrolipoylprotein - R03815.kb*Lipoylprotein;
  R01514 = R01514.kf*D_minus_Glycerate - R01514.kb*_space_3_minus_Phospho_minus_D_minus_glycerate;
  R03662 = R03662.kf*L_minus_Serine - R03662.kb*L_minus_Seryl_minus_tRNA_space_Ser_space_;
  R00371 = R00371.kf*Glycine - R00371.kb*L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid;
  R03654 = R03654.kf*Glycine - R03654.kb*Glycyl_minus_tRNA_space_Gly_space_;
  R00945 = R00945.kf*_space_5_space_10_minus_Methylenetetrahydrofolate*Glycine - R00945.kb*L_minus_Serine;
  R00751 = R00751.kf*L_minus_Threonine - R00751.kb*Glycine;
  R02291 = R02291.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R02291.kb*_space_4_minus_Phospho_minus_L_minus_aspartate;
  R04173 = R04173.kf*O_minus_Phospho_minus_L_minus_serine - R04173.kb*_space_3_minus_Phosphonooxypyruvate;
  R01466 = R01466.kf*O_minus_Phospho_minus_L_minus_homoserine - R01466.kb*L_minus_Threonine;
  R02529 = R02529.kf*Aminoacetone - R02529.kb*Methylglyoxal;
  R02567 = R02567.kf*Betaine_space_aldehyde - R02567.kb*Betaine;
  R01025 = R01025.kf*Choline - R01025.kb*Betaine_space_aldehyde;
  R00610 = R00610.kf*Sarcosine - R00610.kb*Glycine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_99_space_1.sbmlRole="species";
  E1_space_1_space_99_space_1.sbmlCompartment="uVol";
  E1_space_2_space_1_space_8.sbmlRole="species";
  E1_space_2_space_1_space_8.sbmlCompartment="uVol";
  E2_space_7_space_1_space_31.sbmlRole="species";
  E2_space_7_space_1_space_31.sbmlCompartment="uVol";
  E4_space_1_space_2_space_5.sbmlRole="species";
  E4_space_1_space_2_space_5.sbmlCompartment="uVol";
  E6_space_1_space_1_space_14.sbmlRole="species";
  E6_space_1_space_1_space_14.sbmlCompartment="uVol";
  E1_space_5_space_3_space_1.sbmlRole="species";
  E1_space_5_space_3_space_1.sbmlCompartment="uVol";
  E2_space_6_space_1_space_52.sbmlRole="species";
  E2_space_6_space_1_space_52.sbmlCompartment="uVol";
  E6_space_1_space_1_space_11.sbmlRole="species";
  E6_space_1_space_1_space_11.sbmlCompartment="uVol";
  E3_space_1_space_3_space_3.sbmlRole="species";
  E3_space_1_space_3_space_3.sbmlCompartment="uVol";
  E2_space_1_space_2_space_1.sbmlRole="species";
  E2_space_1_space_2_space_1.sbmlCompartment="uVol";
  E4_space_2_space_3_space_1.sbmlRole="species";
  E4_space_2_space_3_space_1.sbmlCompartment="uVol";
  E2_space_3_space_1_space_29.sbmlRole="species";
  E2_space_3_space_1_space_29.sbmlCompartment="uVol";
  E4_space_3_space_1_space_17.sbmlRole="species";
  E4_space_3_space_1_space_17.sbmlCompartment="uVol";
  E1_space_2_space_1_space_11.sbmlRole="species";
  E1_space_2_space_1_space_11.sbmlCompartment="uVol";
  E2_space_7_space_1_space_39.sbmlRole="species";
  E2_space_7_space_1_space_39.sbmlCompartment="uVol";
  E1_space_4_space_4_space_2.sbmlRole="species";
  E1_space_4_space_4_space_2.sbmlCompartment="uVol";
  E1_space_1_space_1_space_3.sbmlRole="species";
  E1_space_1_space_1_space_3.sbmlCompartment="uVol";
  E1_space_4_space_3_space_6.sbmlRole="species";
  E1_space_4_space_3_space_6.sbmlCompartment="uVol";
  E1_space_8_space_1_space_4.sbmlRole="species";
  E1_space_8_space_1_space_4.sbmlCompartment="uVol";
  Dihydrolipoylprotein.sbmlRole="species";
  Dihydrolipoylprotein.sbmlCompartment="uVol";
  Lipoylprotein.sbmlRole="species";
  Lipoylprotein.sbmlCompartment="uVol";
  D_minus_Glycerate.sbmlRole="species";
  D_minus_Glycerate.sbmlCompartment="uVol";
  Choline.sbmlRole="species";
  Choline.sbmlCompartment="uVol";
  Betaine_space_aldehyde.sbmlRole="species";
  Betaine_space_aldehyde.sbmlCompartment="uVol";
  Betaine.sbmlRole="species";
  Betaine.sbmlCompartment="uVol";
  xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlRole="species";
  xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlName="_space_3_minus_Phospho_minus_D_minus_glycerate";
  xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlCompartment="uVol";
  L_minus_Allothreonine.sbmlRole="species";
  L_minus_Allothreonine.sbmlCompartment="uVol";
  xxx_space_3_minus_Phosphonooxypyruvate.sbmlRole="species";
  xxx_space_3_minus_Phosphonooxypyruvate.sbmlName="_space_3_minus_Phosphonooxypyruvate";
  xxx_space_3_minus_Phosphonooxypyruvate.sbmlCompartment="uVol";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlRole="species";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlCompartment="uVol";
  Sarcosine.sbmlRole="species";
  Sarcosine.sbmlCompartment="uVol";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlRole="species";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlCompartment="uVol";
  O_minus_Phospho_minus_L_minus_serine.sbmlRole="species";
  O_minus_Phospho_minus_L_minus_serine.sbmlCompartment="uVol";
  Glycine.sbmlRole="species";
  Glycine.sbmlCompartment="uVol";
  L_minus_Serine.sbmlRole="species";
  L_minus_Serine.sbmlCompartment="uVol";
  L_minus_Threonine.sbmlRole="species";
  L_minus_Threonine.sbmlCompartment="uVol";
  xxx_space_4_minus_Phospho_minus_L_minus_aspartate.sbmlRole="species";
  xxx_space_4_minus_Phospho_minus_L_minus_aspartate.sbmlName="_space_4_minus_Phospho_minus_L_minus_aspartate";
  xxx_space_4_minus_Phospho_minus_L_minus_aspartate.sbmlCompartment="uVol";
  O_minus_Phospho_minus_L_minus_homoserine.sbmlRole="species";
  O_minus_Phospho_minus_L_minus_homoserine.sbmlCompartment="uVol";
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid.sbmlRole="species";
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  L_minus_Homoserine.sbmlRole="species";
  L_minus_Homoserine.sbmlCompartment="uVol";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlRole="species";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlCompartment="uVol";
  CO2.sbmlRole="species";
  CO2.sbmlCompartment="uVol";
  Aminoacetone.sbmlRole="species";
  Aminoacetone.sbmlCompartment="uVol";
  Methylglyoxal.sbmlRole="species";
  Methylglyoxal.sbmlCompartment="uVol";
  xxx_space_5_space_10_minus_Methylenetetrahydrofolate.sbmlRole="species";
  xxx_space_5_space_10_minus_Methylenetetrahydrofolate.sbmlName="_space_5_space_10_minus_Methylenetetrahydrofolate";
  xxx_space_5_space_10_minus_Methylenetetrahydrofolate.sbmlCompartment="uVol";
  S_minus_Aminomethyldihydrolipoylprotein.sbmlRole="species";
  S_minus_Aminomethyldihydrolipoylprotein.sbmlCompartment="uVol";
  R01771.sbmlRole="rate";
  R01771.kf.sbmlRole="rate";
  R01771.kb.sbmlRole="rate";
  R02565.sbmlRole="rate";
  R02565.kf.sbmlRole="rate";
  R02565.kb.sbmlRole="rate";
  R00220.sbmlRole="rate";
  R00220.kf.sbmlRole="rate";
  R00220.kb.sbmlRole="rate";
  R00582.sbmlRole="rate";
  R00582.kf.sbmlRole="rate";
  R00582.kb.sbmlRole="rate";
  R01773.sbmlRole="rate";
  R01773.kf.sbmlRole="rate";
  R01773.kb.sbmlRole="rate";
  R06171.sbmlRole="rate";
  R06171.kf.sbmlRole="rate";
  R06171.kb.sbmlRole="rate";
  R03425.sbmlRole="rate";
  R03425.kf.sbmlRole="rate";
  R03425.kb.sbmlRole="rate";
  R03815.sbmlRole="rate";
  R03815.kf.sbmlRole="rate";
  R03815.kb.sbmlRole="rate";
  R01514.sbmlRole="rate";
  R01514.kf.sbmlRole="rate";
  R01514.kb.sbmlRole="rate";
  R03662.sbmlRole="rate";
  R03662.kf.sbmlRole="rate";
  R03662.kb.sbmlRole="rate";
  R00371.sbmlRole="rate";
  R00371.kf.sbmlRole="rate";
  R00371.kb.sbmlRole="rate";
  R03654.sbmlRole="rate";
  R03654.kf.sbmlRole="rate";
  R03654.kb.sbmlRole="rate";
  R00945.sbmlRole="rate";
  R00945.kf.sbmlRole="rate";
  R00945.kb.sbmlRole="rate";
  R00751.sbmlRole="rate";
  R00751.kf.sbmlRole="rate";
  R00751.kb.sbmlRole="rate";
  R02291.sbmlRole="rate";
  R02291.kf.sbmlRole="rate";
  R02291.kb.sbmlRole="rate";
  R04173.sbmlRole="rate";
  R04173.kf.sbmlRole="rate";
  R04173.kb.sbmlRole="rate";
  R01466.sbmlRole="rate";
  R01466.kf.sbmlRole="rate";
  R01466.kb.sbmlRole="rate";
  R02529.sbmlRole="rate";
  R02529.kf.sbmlRole="rate";
  R02529.kb.sbmlRole="rate";
  R02567.sbmlRole="rate";
  R02567.kf.sbmlRole="rate";
  R02567.kb.sbmlRole="rate";
  R01025.sbmlRole="rate";
  R01025.kf.sbmlRole="rate";
  R01025.kb.sbmlRole="rate";
  R00610.sbmlRole="rate";
  R00610.kf.sbmlRole="rate";
  R00610.kb.sbmlRole="rate";
}