// This model generated automatically from SBML
// WARNING: Renamed variable _gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine to xxx_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Cyano_minus_L_minus_alanine to xxx_space_3_minus_Cyano_minus_L_minus_alanine due to JSim namespace restrictions
// WARNING: Renamed variable _gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile to xxx_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03971: _space_3_minus_Cyano_minus_L_minus_alanine <=> _gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile 
// R03970: _space_3_minus_Cyano_minus_L_minus_alanine <=> _gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine 
// R04949: Cyanoglycoside <=> Cyanohydrin 
// R00945: Glycine => L_minus_Serine 
// R03909: Monocarboxylic_space_acid_space_amide <=> Carboxylate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_3_space_2_space_2 = 0 M;
  real E3_space_2_space_1_space_21 = 0 M;
  real E3_space_5_space_1_space_4 = 0 M;
  real E2_space_1_space_2_space_1 = 0 M;
  real xxx_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine(time) M;
  real xxx_space_3_minus_Cyano_minus_L_minus_alanine(time) M;
  real Cyanohydrin(time) M;
  real Cyanoglycoside(time) M;
  real Carboxylate(time) M;
  real Monocarboxylic_space_acid_space_amide(time) M;
  real xxx_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile(time) M;
  real L_minus_Serine(time) M;
  real Glycine(time) M;
  real R03971(time) katal;
  extern real R03971.kf;
  extern real R03971.kb;
  real R03970(time) katal;
  extern real R03970.kf;
  extern real R03970.kb;
  real R04949(time) katal;
  extern real R04949.kf;
  extern real R04949.kb;
  real R00945(time) katal;
  extern real R00945.kf;
  extern real R00945.kb;
  real R03909(time) katal;
  extern real R03909.kf;
  extern real R03909.kb;

  // equations
  when (time=time.min) xxx_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine = 0;
  (xxx_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine*uVol):time = R03970;
  when (time=time.min) xxx_space_3_minus_Cyano_minus_L_minus_alanine = 0;
  (xxx_space_3_minus_Cyano_minus_L_minus_alanine*uVol):time = -1*R03971 + -1*R03970;
  when (time=time.min) Cyanohydrin = 0;
  (Cyanohydrin*uVol):time = R04949;
  when (time=time.min) Cyanoglycoside = 0;
  (Cyanoglycoside*uVol):time = -1*R04949;
  when (time=time.min) Carboxylate = 0;
  (Carboxylate*uVol):time = R03909;
  when (time=time.min) Monocarboxylic_space_acid_space_amide = 0;
  (Monocarboxylic_space_acid_space_amide*uVol):time = -1*R03909;
  when (time=time.min) xxx_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile = 0;
  (xxx_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile*uVol):time = R03971;
  when (time=time.min) L_minus_Serine = 0;
  (L_minus_Serine*uVol):time = R00945;
  when (time=time.min) Glycine = 0;
  (Glycine*uVol):time = -1*R00945;
  R03971 = R03971.kf*_space_3_minus_Cyano_minus_L_minus_alanine - R03971.kb*_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile;
  R03970 = R03970.kf*_space_3_minus_Cyano_minus_L_minus_alanine - R03970.kb*_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine;
  R04949 = R04949.kf*Cyanoglycoside - R04949.kb*Cyanohydrin;
  R00945 = R00945.kf*Glycine - R00945.kb*L_minus_Serine;
  R03909 = R03909.kf*Monocarboxylic_space_acid_space_amide - R03909.kb*Carboxylate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_3_space_2_space_2.sbmlRole="species";
  E2_space_3_space_2_space_2.sbmlCompartment="uVol";
  E3_space_2_space_1_space_21.sbmlRole="species";
  E3_space_2_space_1_space_21.sbmlCompartment="uVol";
  E3_space_5_space_1_space_4.sbmlRole="species";
  E3_space_5_space_1_space_4.sbmlCompartment="uVol";
  E2_space_1_space_2_space_1.sbmlRole="species";
  E2_space_1_space_2_space_1.sbmlCompartment="uVol";
  xxx_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine.sbmlRole="species";
  xxx_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine.sbmlName="_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine";
  xxx_gamma__minus_Glutamyl_minus__beta__minus_cyanoalanine.sbmlCompartment="uVol";
  xxx_space_3_minus_Cyano_minus_L_minus_alanine.sbmlRole="species";
  xxx_space_3_minus_Cyano_minus_L_minus_alanine.sbmlName="_space_3_minus_Cyano_minus_L_minus_alanine";
  xxx_space_3_minus_Cyano_minus_L_minus_alanine.sbmlCompartment="uVol";
  Cyanohydrin.sbmlRole="species";
  Cyanohydrin.sbmlCompartment="uVol";
  Cyanoglycoside.sbmlRole="species";
  Cyanoglycoside.sbmlCompartment="uVol";
  Carboxylate.sbmlRole="species";
  Carboxylate.sbmlCompartment="uVol";
  Monocarboxylic_space_acid_space_amide.sbmlRole="species";
  Monocarboxylic_space_acid_space_amide.sbmlCompartment="uVol";
  xxx_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile.sbmlRole="species";
  xxx_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile.sbmlName="_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile";
  xxx_gamma__minus_Glutamyl_minus__beta__minus_aminopropiononitrile.sbmlCompartment="uVol";
  L_minus_Serine.sbmlRole="species";
  L_minus_Serine.sbmlCompartment="uVol";
  Glycine.sbmlRole="species";
  Glycine.sbmlCompartment="uVol";
  R03971.sbmlRole="rate";
  R03971.kf.sbmlRole="rate";
  R03971.kb.sbmlRole="rate";
  R03970.sbmlRole="rate";
  R03970.kf.sbmlRole="rate";
  R03970.kb.sbmlRole="rate";
  R04949.sbmlRole="rate";
  R04949.kf.sbmlRole="rate";
  R04949.kb.sbmlRole="rate";
  R00945.sbmlRole="rate";
  R00945.kf.sbmlRole="rate";
  R00945.kb.sbmlRole="rate";
  R03909.sbmlRole="rate";
  R03909.kf.sbmlRole="rate";
  R03909.kb.sbmlRole="rate";
}