// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02649: N_minus_Acetyl_minus_L_minus_glutamate <=> N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate 
// R01154: Putrescine <=> N_minus_Acetylputrescine 
// R00005: Urea_minus_1_minus_carboxylate <=> CO2 
// R01398: Carbamoyl_space_phosphate L_minus_Ornithine <=> L_minus_Citrulline 
// R01954: L_minus_Citrulline L_minus_Aspartate <=> N_minus_space_L_minus_Arginino_space_succinate 
// R00259: L_minus_Glutamate <=> N_minus_Acetyl_minus_L_minus_glutamate 
// R00239: L_minus_Glutamate <=> L_minus_Glutamyl_space_5_minus_phosphate 
// R01157: Agmatine <=> Putrescine 
// R02283: N_minus_Acetylornithine => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde 
// R03180: space_4_minus_Guanidinobutanamide <=> space_4_minus_Guanidinobutanoate 
// R03443: N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate 
// R00774: Urea => Urea_minus_1_minus_carboxylate 
// R00669: N_minus_Acetylornithine <=> L_minus_Ornithine 
// R03313: L_minus_Glutamate_space_5_minus_semialdehyde => L_minus_Glutamyl_space_5_minus_phosphate 
// R02282: N_minus_Acetylornithine => L_minus_Ornithine 
// R00566: L_minus_Arginine <=> Agmatine 
// R01086: N_minus_space_L_minus_Arginino_space_succinate <=> Fumarate L_minus_Arginine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_2_space_8 = 0 M;
  real E2_space_7_space_2_space_11 = 0 M;
  real E2_space_3_space_1_space_1 = 0 M;
  real E2_space_6_space_1_space_11 = 0 M;
  real E3_space_5_space_1_space_16 = 0 M;
  real E2_space_3_space_1_space_35 = 0 M;
  real E2_space_3_space_1_space_57 = 0 M;
  real E2_space_1_space_3_space_3 = 0 M;
  real E6_space_3_space_4_space_5 = 0 M;
  real E4_space_3_space_2_space_1 = 0 M;
  real E3_space_5_space_3_space_11 = 0 M;
  real E6_space_3_space_4_space_6 = 0 M;
  real E3_space_5_space_1_space_54 = 0 M;
  real E4_space_1_space_1_space_19 = 0 M;
  real E1_space_2_space_1_space_38 = 0 M;
  real E1_space_2_space_1_space_41 = 0 M;
  real E3_space_5_space_1_space_4 = 0 M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate(time) M;
  real L_minus_Glutamyl_space_5_minus_phosphate(time) M;
  real L_minus_Glutamate_space_5_minus_semialdehyde(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate(time) M;
  real L_minus_Glutamate(time) M;
  real Carbamoyl_space_phosphate(time) M;
  real N_minus_Acetylornithine(time) M;
  real L_minus_Aspartate(time) M;
  real L_minus_Citrulline(time) M;
  real N_minus_Acetylputrescine(time) M;
  real L_minus_Ornithine(time) M;
  real N_minus_space_L_minus_Arginino_space_succinate(time) M;
  real Putrescine(time) M;
  real L_minus_Arginine(time) M;
  real Urea(time) M;
  real Fumarate(time) M;
  real Urea_minus_1_minus_carboxylate(time) M;
  real CO2(time) M;
  real Agmatine(time) M;
  real space_4_minus_Guanidinobutanamide(time) M;
  real space_4_minus_Guanidinobutanoate(time) M;
  real R02649(time) katal;
  extern real R02649.kf;
  extern real R02649.kb;
  real R01154(time) katal;
  extern real R01154.kf;
  extern real R01154.kb;
  real R00005(time) katal;
  extern real R00005.kf;
  extern real R00005.kb;
  real R01398(time) katal;
  extern real R01398.kf;
  extern real R01398.kb;
  real R01954(time) katal;
  extern real R01954.kf;
  extern real R01954.kb;
  real R00259(time) katal;
  extern real R00259.kf;
  extern real R00259.kb;
  real R00239(time) katal;
  extern real R00239.kf;
  extern real R00239.kb;
  real R01157(time) katal;
  extern real R01157.kf;
  extern real R01157.kb;
  real R02283(time) katal;
  extern real R02283.kf;
  extern real R02283.kb;
  real R03180(time) katal;
  extern real R03180.kf;
  extern real R03180.kb;
  real R03443(time) katal;
  extern real R03443.kf;
  extern real R03443.kb;
  real R00774(time) katal;
  extern real R00774.kf;
  extern real R00774.kb;
  real R00669(time) katal;
  extern real R00669.kf;
  extern real R00669.kb;
  real R03313(time) katal;
  extern real R03313.kf;
  extern real R03313.kb;
  real R02282(time) katal;
  extern real R02282.kf;
  extern real R02282.kb;
  real R00566(time) katal;
  extern real R00566.kf;
  extern real R00566.kb;
  real R01086(time) katal;
  extern real R01086.kf;
  extern real R01086.kb;

  // equations
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate:time = (R02649 + R03443)/uVol;
  when (time=time.min) L_minus_Glutamyl_space_5_minus_phosphate = 0;
  L_minus_Glutamyl_space_5_minus_phosphate:time = (R00239 + R03313)/uVol;
  when (time=time.min) L_minus_Glutamate_space_5_minus_semialdehyde = 0;
  L_minus_Glutamate_space_5_minus_semialdehyde:time = (-1*R03313)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde:time = (R02283 + -1*R03443)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate:time = (-1*R02649 + R00259)/uVol;
  when (time=time.min) L_minus_Glutamate = 0;
  L_minus_Glutamate:time = (-1*R00259 + -1*R00239)/uVol;
  when (time=time.min) Carbamoyl_space_phosphate = 0;
  Carbamoyl_space_phosphate:time = (-1*R01398)/uVol;
  when (time=time.min) N_minus_Acetylornithine = 0;
  N_minus_Acetylornithine:time = (-1*R02283 + -1*R00669 + -1*R02282)/uVol;
  when (time=time.min) L_minus_Aspartate = 0;
  L_minus_Aspartate:time = (-1*R01954)/uVol;
  when (time=time.min) L_minus_Citrulline = 0;
  L_minus_Citrulline:time = (R01398 + -1*R01954)/uVol;
  when (time=time.min) N_minus_Acetylputrescine = 0;
  N_minus_Acetylputrescine:time = (R01154)/uVol;
  when (time=time.min) L_minus_Ornithine = 0;
  L_minus_Ornithine:time = (-1*R01398 + R00669 + R02282)/uVol;
  when (time=time.min) N_minus_space_L_minus_Arginino_space_succinate = 0;
  N_minus_space_L_minus_Arginino_space_succinate:time = (R01954 + -1*R01086)/uVol;
  when (time=time.min) Putrescine = 0;
  Putrescine:time = (-1*R01154 + R01157)/uVol;
  when (time=time.min) L_minus_Arginine = 0;
  L_minus_Arginine:time = (-1*R00566 + R01086)/uVol;
  when (time=time.min) Urea = 0;
  Urea:time = (-1*R00774)/uVol;
  when (time=time.min) Fumarate = 0;
  Fumarate:time = (R01086)/uVol;
  when (time=time.min) Urea_minus_1_minus_carboxylate = 0;
  Urea_minus_1_minus_carboxylate:time = (-1*R00005 + R00774)/uVol;
  when (time=time.min) CO2 = 0;
  CO2:time = (R00005)/uVol;
  when (time=time.min) Agmatine = 0;
  Agmatine:time = (-1*R01157 + R00566)/uVol;
  when (time=time.min) space_4_minus_Guanidinobutanamide = 0;
  space_4_minus_Guanidinobutanamide:time = (-1*R03180)/uVol;
  when (time=time.min) space_4_minus_Guanidinobutanoate = 0;
  space_4_minus_Guanidinobutanoate:time = (R03180)/uVol;
  R02649 = R02649.kf*N_minus_Acetyl_minus_L_minus_glutamate - R02649.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate;
  R01154 = R01154.kf*Putrescine - R01154.kb*N_minus_Acetylputrescine;
  R00005 = R00005.kf*Urea_minus_1_minus_carboxylate - R00005.kb*CO2;
  R01398 = R01398.kf*Carbamoyl_space_phosphate*L_minus_Ornithine - R01398.kb*L_minus_Citrulline;
  R01954 = R01954.kf*L_minus_Citrulline*L_minus_Aspartate - R01954.kb*N_minus_space_L_minus_Arginino_space_succinate;
  R00259 = R00259.kf*L_minus_Glutamate - R00259.kb*N_minus_Acetyl_minus_L_minus_glutamate;
  R00239 = R00239.kf*L_minus_Glutamate - R00239.kb*L_minus_Glutamyl_space_5_minus_phosphate;
  R01157 = R01157.kf*Agmatine - R01157.kb*Putrescine;
  R02283 = R02283.kf*N_minus_Acetylornithine - R02283.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde;
  R03180 = R03180.kf*space_4_minus_Guanidinobutanamide - R03180.kb*space_4_minus_Guanidinobutanoate;
  R03443 = R03443.kf*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde - R03443.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate;
  R00774 = R00774.kf*Urea - R00774.kb*Urea_minus_1_minus_carboxylate;
  R00669 = R00669.kf*N_minus_Acetylornithine - R00669.kb*L_minus_Ornithine;
  R03313 = R03313.kf*L_minus_Glutamate_space_5_minus_semialdehyde - R03313.kb*L_minus_Glutamyl_space_5_minus_phosphate;
  R02282 = R02282.kf*N_minus_Acetylornithine - R02282.kb*L_minus_Ornithine;
  R00566 = R00566.kf*L_minus_Arginine - R00566.kb*Agmatine;
  R01086 = R01086.kf*N_minus_space_L_minus_Arginino_space_succinate - R01086.kb*Fumarate*L_minus_Arginine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_2_space_8.sbmlRole="species";
  E2_space_7_space_2_space_8.sbmlCompartment="uVol";
  E2_space_7_space_2_space_11.sbmlRole="species";
  E2_space_7_space_2_space_11.sbmlCompartment="uVol";
  E2_space_3_space_1_space_1.sbmlRole="species";
  E2_space_3_space_1_space_1.sbmlCompartment="uVol";
  E2_space_6_space_1_space_11.sbmlRole="species";
  E2_space_6_space_1_space_11.sbmlCompartment="uVol";
  E3_space_5_space_1_space_16.sbmlRole="species";
  E3_space_5_space_1_space_16.sbmlCompartment="uVol";
  E2_space_3_space_1_space_35.sbmlRole="species";
  E2_space_3_space_1_space_35.sbmlCompartment="uVol";
  E2_space_3_space_1_space_57.sbmlRole="species";
  E2_space_3_space_1_space_57.sbmlCompartment="uVol";
  E2_space_1_space_3_space_3.sbmlRole="species";
  E2_space_1_space_3_space_3.sbmlCompartment="uVol";
  E6_space_3_space_4_space_5.sbmlRole="species";
  E6_space_3_space_4_space_5.sbmlCompartment="uVol";
  E4_space_3_space_2_space_1.sbmlRole="species";
  E4_space_3_space_2_space_1.sbmlCompartment="uVol";
  E3_space_5_space_3_space_11.sbmlRole="species";
  E3_space_5_space_3_space_11.sbmlCompartment="uVol";
  E6_space_3_space_4_space_6.sbmlRole="species";
  E6_space_3_space_4_space_6.sbmlCompartment="uVol";
  E3_space_5_space_1_space_54.sbmlRole="species";
  E3_space_5_space_1_space_54.sbmlCompartment="uVol";
  E4_space_1_space_1_space_19.sbmlRole="species";
  E4_space_1_space_1_space_19.sbmlCompartment="uVol";
  E1_space_2_space_1_space_38.sbmlRole="species";
  E1_space_2_space_1_space_38.sbmlCompartment="uVol";
  E1_space_2_space_1_space_41.sbmlRole="species";
  E1_space_2_space_1_space_41.sbmlCompartment="uVol";
  E3_space_5_space_1_space_4.sbmlRole="species";
  E3_space_5_space_1_space_4.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Glutamyl_space_5_minus_phosphate.sbmlRole="species";
  L_minus_Glutamyl_space_5_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Glutamate_space_5_minus_semialdehyde.sbmlRole="species";
  L_minus_Glutamate_space_5_minus_semialdehyde.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlCompartment="uVol";
  L_minus_Glutamate.sbmlRole="species";
  L_minus_Glutamate.sbmlCompartment="uVol";
  Carbamoyl_space_phosphate.sbmlRole="species";
  Carbamoyl_space_phosphate.sbmlCompartment="uVol";
  N_minus_Acetylornithine.sbmlRole="species";
  N_minus_Acetylornithine.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  L_minus_Citrulline.sbmlRole="species";
  L_minus_Citrulline.sbmlCompartment="uVol";
  N_minus_Acetylputrescine.sbmlRole="species";
  N_minus_Acetylputrescine.sbmlCompartment="uVol";
  L_minus_Ornithine.sbmlRole="species";
  L_minus_Ornithine.sbmlCompartment="uVol";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlRole="species";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlCompartment="uVol";
  Putrescine.sbmlRole="species";
  Putrescine.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  Urea.sbmlRole="species";
  Urea.sbmlCompartment="uVol";
  Fumarate.sbmlRole="species";
  Fumarate.sbmlCompartment="uVol";
  Urea_minus_1_minus_carboxylate.sbmlRole="species";
  Urea_minus_1_minus_carboxylate.sbmlCompartment="uVol";
  CO2.sbmlRole="species";
  CO2.sbmlCompartment="uVol";
  Agmatine.sbmlRole="species";
  Agmatine.sbmlCompartment="uVol";
  space_4_minus_Guanidinobutanamide.sbmlRole="species";
  space_4_minus_Guanidinobutanamide.sbmlCompartment="uVol";
  space_4_minus_Guanidinobutanoate.sbmlRole="species";
  space_4_minus_Guanidinobutanoate.sbmlCompartment="uVol";
  R02649.sbmlRole="rate";
  R02649.kf.sbmlRole="rate";
  R02649.kb.sbmlRole="rate";
  R01154.sbmlRole="rate";
  R01154.kf.sbmlRole="rate";
  R01154.kb.sbmlRole="rate";
  R00005.sbmlRole="rate";
  R00005.kf.sbmlRole="rate";
  R00005.kb.sbmlRole="rate";
  R01398.sbmlRole="rate";
  R01398.kf.sbmlRole="rate";
  R01398.kb.sbmlRole="rate";
  R01954.sbmlRole="rate";
  R01954.kf.sbmlRole="rate";
  R01954.kb.sbmlRole="rate";
  R00259.sbmlRole="rate";
  R00259.kf.sbmlRole="rate";
  R00259.kb.sbmlRole="rate";
  R00239.sbmlRole="rate";
  R00239.kf.sbmlRole="rate";
  R00239.kb.sbmlRole="rate";
  R01157.sbmlRole="rate";
  R01157.kf.sbmlRole="rate";
  R01157.kb.sbmlRole="rate";
  R02283.sbmlRole="rate";
  R02283.kf.sbmlRole="rate";
  R02283.kb.sbmlRole="rate";
  R03180.sbmlRole="rate";
  R03180.kf.sbmlRole="rate";
  R03180.kb.sbmlRole="rate";
  R03443.sbmlRole="rate";
  R03443.kf.sbmlRole="rate";
  R03443.kb.sbmlRole="rate";
  R00774.sbmlRole="rate";
  R00774.kf.sbmlRole="rate";
  R00774.kb.sbmlRole="rate";
  R00669.sbmlRole="rate";
  R00669.kf.sbmlRole="rate";
  R00669.kb.sbmlRole="rate";
  R03313.sbmlRole="rate";
  R03313.kf.sbmlRole="rate";
  R03313.kb.sbmlRole="rate";
  R02282.sbmlRole="rate";
  R02282.kf.sbmlRole="rate";
  R02282.kb.sbmlRole="rate";
  R00566.sbmlRole="rate";
  R00566.kf.sbmlRole="rate";
  R00566.kb.sbmlRole="rate";
  R01086.sbmlRole="rate";
  R01086.kf.sbmlRole="rate";
  R01086.kb.sbmlRole="rate";
}