// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03659: L_minus_Methionine <=> L_minus_Methionyl_minus_tRNA 
// R00192: S_minus_Adenosyl_minus_L_minus_homocysteine => L_minus_Homocysteine 
// R00946: L_minus_Homocysteine <=> L_minus_Methionine 
// R01401: space_5_space_minus_Methylthioadenosine <=> space_5_minus_Methylthio_minus_D_minus_ribose 
// R01287: O_minus_Acetyl_minus_L_minus_homoserine <=> L_minus_Homocysteine 
// R04405: L_minus_Homocysteine <=> L_minus_Methionine 
// R03940: L_minus_Methionyl_minus_tRNA <=> N_minus_Formylmethionyl_minus_tRNA 
// R00194: S_minus_Adenosyl_minus_L_minus_homocysteine => S_minus_Ribosyl_minus_L_minus_homocysteine 
// R00177: L_minus_Methionine <=> S_minus_Adenosyl_minus_L_minus_methionine 
// R01776: L_minus_Homoserine => O_minus_Acetyl_minus_L_minus_homoserine 
// R07396: space_4_minus_Methylthio_minus_2_minus_oxobutanoic_space_acid <=> L_minus_Methionine 
// R01286: L_minus_Cystathionine <=> L_minus_Homocysteine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_1_space_2_space_9 = 0 M;
  real E6_space_1_space_1_space_10 = 0 M;
  real E2_space_1_space_1_space_13 = 0 M;
  real E4_space_4_space_1_space_8 = 0 M;
  real E2_space_1_space_1_space_14 = 0 M;
  real E2_space_6_space_1_space_57 = 0 M;
  real E3_space_3_space_1_space_1 = 0 M;
  real E2_space_5_space_1_space_6 = 0 M;
  real E2_space_3_space_1_space_31 = 0 M;
  real E2_space_5_space_1_space_49 = 0 M;
  real E3_space_2_space_2_space_9 = 0 M;
  real N_minus_Formylmethionyl_minus_tRNA(time) M;
  real L_minus_Methionyl_minus_tRNA(time) M;
  real L_minus_Cystathionine(time) M;
  real L_minus_Homocysteine(time) M;
  real L_minus_Methionine(time) M;
  real space_4_minus_Methylthio_minus_2_minus_oxobutanoic_space_acid(time) M;
  real L_minus_Homoserine(time) M;
  real O_minus_Acetyl_minus_L_minus_homoserine(time) M;
  real S_minus_Adenosyl_minus_L_minus_homocysteine(time) M;
  real S_minus_Adenosyl_minus_L_minus_methionine(time) M;
  real S_minus_Ribosyl_minus_L_minus_homocysteine(time) M;
  real space_5_space_minus_Methylthioadenosine(time) M;
  real space_5_minus_Methylthio_minus_D_minus_ribose(time) M;
  real R03659(time) katal;
  extern real R03659.kf;
  extern real R03659.kb;
  real R00192(time) katal;
  extern real R00192.kf;
  extern real R00192.kb;
  real R00946(time) katal;
  extern real R00946.kf;
  extern real R00946.kb;
  real R01401(time) katal;
  extern real R01401.kf;
  extern real R01401.kb;
  real R01287(time) katal;
  extern real R01287.kf;
  extern real R01287.kb;
  real R04405(time) katal;
  extern real R04405.kf;
  extern real R04405.kb;
  real R03940(time) katal;
  extern real R03940.kf;
  extern real R03940.kb;
  real R00194(time) katal;
  extern real R00194.kf;
  extern real R00194.kb;
  real R00177(time) katal;
  extern real R00177.kf;
  extern real R00177.kb;
  real R01776(time) katal;
  extern real R01776.kf;
  extern real R01776.kb;
  real R07396(time) katal;
  extern real R07396.kf;
  extern real R07396.kb;
  real R01286(time) katal;
  extern real R01286.kf;
  extern real R01286.kb;

  // equations
  when (time=time.min) N_minus_Formylmethionyl_minus_tRNA = 0;
  N_minus_Formylmethionyl_minus_tRNA:time = (R03940)/uVol;
  when (time=time.min) L_minus_Methionyl_minus_tRNA = 0;
  L_minus_Methionyl_minus_tRNA:time = (R03659 + -1*R03940)/uVol;
  when (time=time.min) L_minus_Cystathionine = 0;
  L_minus_Cystathionine:time = (-1*R01286)/uVol;
  when (time=time.min) L_minus_Homocysteine = 0;
  L_minus_Homocysteine:time = (R00192 + -1*R00946 + R01287 + -1*R04405 + R01286)/uVol;
  when (time=time.min) L_minus_Methionine = 0;
  L_minus_Methionine:time = (-1*R03659 + R00946 + R04405 + -1*R00177 + R07396)/uVol;
  when (time=time.min) space_4_minus_Methylthio_minus_2_minus_oxobutanoic_space_acid = 0;
  space_4_minus_Methylthio_minus_2_minus_oxobutanoic_space_acid:time = (-1*R07396)/uVol;
  when (time=time.min) L_minus_Homoserine = 0;
  L_minus_Homoserine:time = (-1*R01776)/uVol;
  when (time=time.min) O_minus_Acetyl_minus_L_minus_homoserine = 0;
  O_minus_Acetyl_minus_L_minus_homoserine:time = (-1*R01287 + R01776)/uVol;
  when (time=time.min) S_minus_Adenosyl_minus_L_minus_homocysteine = 0;
  S_minus_Adenosyl_minus_L_minus_homocysteine:time = (-1*R00192 + -1*R00194)/uVol;
  when (time=time.min) S_minus_Adenosyl_minus_L_minus_methionine = 0;
  S_minus_Adenosyl_minus_L_minus_methionine:time = (R00177)/uVol;
  when (time=time.min) S_minus_Ribosyl_minus_L_minus_homocysteine = 0;
  S_minus_Ribosyl_minus_L_minus_homocysteine:time = (R00194)/uVol;
  when (time=time.min) space_5_space_minus_Methylthioadenosine = 0;
  space_5_space_minus_Methylthioadenosine:time = (-1*R01401)/uVol;
  when (time=time.min) space_5_minus_Methylthio_minus_D_minus_ribose = 0;
  space_5_minus_Methylthio_minus_D_minus_ribose:time = (R01401)/uVol;
  R03659 = R03659.kf*L_minus_Methionine - R03659.kb*L_minus_Methionyl_minus_tRNA;
  R00192 = R00192.kf*S_minus_Adenosyl_minus_L_minus_homocysteine - R00192.kb*L_minus_Homocysteine;
  R00946 = R00946.kf*L_minus_Homocysteine - R00946.kb*L_minus_Methionine;
  R01401 = R01401.kf*space_5_space_minus_Methylthioadenosine - R01401.kb*space_5_minus_Methylthio_minus_D_minus_ribose;
  R01287 = R01287.kf*O_minus_Acetyl_minus_L_minus_homoserine - R01287.kb*L_minus_Homocysteine;
  R04405 = R04405.kf*L_minus_Homocysteine - R04405.kb*L_minus_Methionine;
  R03940 = R03940.kf*L_minus_Methionyl_minus_tRNA - R03940.kb*N_minus_Formylmethionyl_minus_tRNA;
  R00194 = R00194.kf*S_minus_Adenosyl_minus_L_minus_homocysteine - R00194.kb*S_minus_Ribosyl_minus_L_minus_homocysteine;
  R00177 = R00177.kf*L_minus_Methionine - R00177.kb*S_minus_Adenosyl_minus_L_minus_methionine;
  R01776 = R01776.kf*L_minus_Homoserine - R01776.kb*O_minus_Acetyl_minus_L_minus_homoserine;
  R07396 = R07396.kf*space_4_minus_Methylthio_minus_2_minus_oxobutanoic_space_acid - R07396.kb*L_minus_Methionine;
  R01286 = R01286.kf*L_minus_Cystathionine - R01286.kb*L_minus_Homocysteine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_1_space_2_space_9.sbmlRole="species";
  E2_space_1_space_2_space_9.sbmlCompartment="uVol";
  E6_space_1_space_1_space_10.sbmlRole="species";
  E6_space_1_space_1_space_10.sbmlCompartment="uVol";
  E2_space_1_space_1_space_13.sbmlRole="species";
  E2_space_1_space_1_space_13.sbmlCompartment="uVol";
  E4_space_4_space_1_space_8.sbmlRole="species";
  E4_space_4_space_1_space_8.sbmlCompartment="uVol";
  E2_space_1_space_1_space_14.sbmlRole="species";
  E2_space_1_space_1_space_14.sbmlCompartment="uVol";
  E2_space_6_space_1_space_57.sbmlRole="species";
  E2_space_6_space_1_space_57.sbmlCompartment="uVol";
  E3_space_3_space_1_space_1.sbmlRole="species";
  E3_space_3_space_1_space_1.sbmlCompartment="uVol";
  E2_space_5_space_1_space_6.sbmlRole="species";
  E2_space_5_space_1_space_6.sbmlCompartment="uVol";
  E2_space_3_space_1_space_31.sbmlRole="species";
  E2_space_3_space_1_space_31.sbmlCompartment="uVol";
  E2_space_5_space_1_space_49.sbmlRole="species";
  E2_space_5_space_1_space_49.sbmlCompartment="uVol";
  E3_space_2_space_2_space_9.sbmlRole="species";
  E3_space_2_space_2_space_9.sbmlCompartment="uVol";
  N_minus_Formylmethionyl_minus_tRNA.sbmlRole="species";
  N_minus_Formylmethionyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Methionyl_minus_tRNA.sbmlRole="species";
  L_minus_Methionyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Cystathionine.sbmlRole="species";
  L_minus_Cystathionine.sbmlCompartment="uVol";
  L_minus_Homocysteine.sbmlRole="species";
  L_minus_Homocysteine.sbmlCompartment="uVol";
  L_minus_Methionine.sbmlRole="species";
  L_minus_Methionine.sbmlCompartment="uVol";
  space_4_minus_Methylthio_minus_2_minus_oxobutanoic_space_acid.sbmlRole="species";
  space_4_minus_Methylthio_minus_2_minus_oxobutanoic_space_acid.sbmlCompartment="uVol";
  L_minus_Homoserine.sbmlRole="species";
  L_minus_Homoserine.sbmlCompartment="uVol";
  O_minus_Acetyl_minus_L_minus_homoserine.sbmlRole="species";
  O_minus_Acetyl_minus_L_minus_homoserine.sbmlCompartment="uVol";
  S_minus_Adenosyl_minus_L_minus_homocysteine.sbmlRole="species";
  S_minus_Adenosyl_minus_L_minus_homocysteine.sbmlCompartment="uVol";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlRole="species";
  S_minus_Adenosyl_minus_L_minus_methionine.sbmlCompartment="uVol";
  S_minus_Ribosyl_minus_L_minus_homocysteine.sbmlRole="species";
  S_minus_Ribosyl_minus_L_minus_homocysteine.sbmlCompartment="uVol";
  space_5_space_minus_Methylthioadenosine.sbmlRole="species";
  space_5_space_minus_Methylthioadenosine.sbmlCompartment="uVol";
  space_5_minus_Methylthio_minus_D_minus_ribose.sbmlRole="species";
  space_5_minus_Methylthio_minus_D_minus_ribose.sbmlCompartment="uVol";
  R03659.sbmlRole="rate";
  R03659.kf.sbmlRole="rate";
  R03659.kb.sbmlRole="rate";
  R00192.sbmlRole="rate";
  R00192.kf.sbmlRole="rate";
  R00192.kb.sbmlRole="rate";
  R00946.sbmlRole="rate";
  R00946.kf.sbmlRole="rate";
  R00946.kb.sbmlRole="rate";
  R01401.sbmlRole="rate";
  R01401.kf.sbmlRole="rate";
  R01401.kb.sbmlRole="rate";
  R01287.sbmlRole="rate";
  R01287.kf.sbmlRole="rate";
  R01287.kb.sbmlRole="rate";
  R04405.sbmlRole="rate";
  R04405.kf.sbmlRole="rate";
  R04405.kb.sbmlRole="rate";
  R03940.sbmlRole="rate";
  R03940.kf.sbmlRole="rate";
  R03940.kb.sbmlRole="rate";
  R00194.sbmlRole="rate";
  R00194.kf.sbmlRole="rate";
  R00194.kb.sbmlRole="rate";
  R00177.sbmlRole="rate";
  R00177.kf.sbmlRole="rate";
  R00177.kb.sbmlRole="rate";
  R01776.sbmlRole="rate";
  R01776.kf.sbmlRole="rate";
  R01776.kb.sbmlRole="rate";
  R07396.sbmlRole="rate";
  R07396.kf.sbmlRole="rate";
  R07396.kb.sbmlRole="rate";
  R01286.sbmlRole="rate";
  R01286.kf.sbmlRole="rate";
  R01286.kb.sbmlRole="rate";
}