// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00945: space_5_space_10_minus_Methylenetetrahydrofolate Glycine => L_minus_Serine 
// R03654: Glycine <=> Glycyl_minus_tRNA_space_Gly_space_ 
// R03662: L_minus_Serine <=> L_minus_Seryl_minus_tRNA_space_Ser_space_ 
// R04173: O_minus_Phospho_minus_L_minus_serine => space_3_minus_Phosphonooxypyruvate 
// R01800: L_minus_Serine <=> Phosphatidylserine 
// R02055: Phosphatidylserine <=> Phosphatidylethanolamine 
// R03815: Dihydrolipoylprotein <=> Lipoylprotein 
// R03663: L_minus_Threonine <=> L_minus_Threonyl_minus_tRNA_space_Thr_space_ 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_1_space_1_space_65 = 0 M;
  real E6_space_1_space_1_space_3 = 0 M;
  real E6_space_1_space_1_space_14 = 0 M;
  real E2_space_6_space_1_space_52 = 0 M;
  real E2_space_7_space_8_space_8 = 0 M;
  real E6_space_1_space_1_space_11 = 0 M;
  real E2_space_1_space_2_space_1 = 0 M;
  real E1_space_8_space_1_space_4 = 0 M;
  real Dihydrolipoylprotein(time) M;
  real Lipoylprotein(time) M;
  real L_minus_Threonyl_minus_tRNA_space_Thr_space_(time) M;
  real Phosphatidylethanolamine(time) M;
  real space_3_minus_Phosphonooxypyruvate(time) M;
  real Glycyl_minus_tRNA_space_Gly_space_(time) M;
  real Phosphatidylserine(time) M;
  real L_minus_Seryl_minus_tRNA_space_Ser_space_(time) M;
  real O_minus_Phospho_minus_L_minus_serine(time) M;
  real Glycine(time) M;
  real L_minus_Serine(time) M;
  real L_minus_Threonine(time) M;
  real space_5_space_10_minus_Methylenetetrahydrofolate(time) M;
  real R00945(time) katal;
  extern real R00945.kf;
  extern real R00945.kb;
  real R03654(time) katal;
  extern real R03654.kf;
  extern real R03654.kb;
  real R03662(time) katal;
  extern real R03662.kf;
  extern real R03662.kb;
  real R04173(time) katal;
  extern real R04173.kf;
  extern real R04173.kb;
  real R01800(time) katal;
  extern real R01800.kf;
  extern real R01800.kb;
  real R02055(time) katal;
  extern real R02055.kf;
  extern real R02055.kb;
  real R03815(time) katal;
  extern real R03815.kf;
  extern real R03815.kb;
  real R03663(time) katal;
  extern real R03663.kf;
  extern real R03663.kb;

  // equations
  when (time=time.min) Dihydrolipoylprotein = 0;
  Dihydrolipoylprotein:time = (-1*R03815)/uVol;
  when (time=time.min) Lipoylprotein = 0;
  Lipoylprotein:time = (R03815)/uVol;
  when (time=time.min) L_minus_Threonyl_minus_tRNA_space_Thr_space_ = 0;
  L_minus_Threonyl_minus_tRNA_space_Thr_space_:time = (R03663)/uVol;
  when (time=time.min) Phosphatidylethanolamine = 0;
  Phosphatidylethanolamine:time = (R02055)/uVol;
  when (time=time.min) space_3_minus_Phosphonooxypyruvate = 0;
  space_3_minus_Phosphonooxypyruvate:time = (R04173)/uVol;
  when (time=time.min) Glycyl_minus_tRNA_space_Gly_space_ = 0;
  Glycyl_minus_tRNA_space_Gly_space_:time = (R03654)/uVol;
  when (time=time.min) Phosphatidylserine = 0;
  Phosphatidylserine:time = (R01800 + -1*R02055)/uVol;
  when (time=time.min) L_minus_Seryl_minus_tRNA_space_Ser_space_ = 0;
  L_minus_Seryl_minus_tRNA_space_Ser_space_:time = (R03662)/uVol;
  when (time=time.min) O_minus_Phospho_minus_L_minus_serine = 0;
  O_minus_Phospho_minus_L_minus_serine:time = (-1*R04173)/uVol;
  when (time=time.min) Glycine = 0;
  Glycine:time = (-1*R00945 + -1*R03654)/uVol;
  when (time=time.min) L_minus_Serine = 0;
  L_minus_Serine:time = (R00945 + -1*R03662 + -1*R01800)/uVol;
  when (time=time.min) L_minus_Threonine = 0;
  L_minus_Threonine:time = (-1*R03663)/uVol;
  when (time=time.min) space_5_space_10_minus_Methylenetetrahydrofolate = 0;
  space_5_space_10_minus_Methylenetetrahydrofolate:time = (-1*R00945)/uVol;
  R00945 = R00945.kf*space_5_space_10_minus_Methylenetetrahydrofolate*Glycine - R00945.kb*L_minus_Serine;
  R03654 = R03654.kf*Glycine - R03654.kb*Glycyl_minus_tRNA_space_Gly_space_;
  R03662 = R03662.kf*L_minus_Serine - R03662.kb*L_minus_Seryl_minus_tRNA_space_Ser_space_;
  R04173 = R04173.kf*O_minus_Phospho_minus_L_minus_serine - R04173.kb*space_3_minus_Phosphonooxypyruvate;
  R01800 = R01800.kf*L_minus_Serine - R01800.kb*Phosphatidylserine;
  R02055 = R02055.kf*Phosphatidylserine - R02055.kb*Phosphatidylethanolamine;
  R03815 = R03815.kf*Dihydrolipoylprotein - R03815.kb*Lipoylprotein;
  R03663 = R03663.kf*L_minus_Threonine - R03663.kb*L_minus_Threonyl_minus_tRNA_space_Thr_space_;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_1_space_1_space_65.sbmlRole="species";
  E4_space_1_space_1_space_65.sbmlCompartment="uVol";
  E6_space_1_space_1_space_3.sbmlRole="species";
  E6_space_1_space_1_space_3.sbmlCompartment="uVol";
  E6_space_1_space_1_space_14.sbmlRole="species";
  E6_space_1_space_1_space_14.sbmlCompartment="uVol";
  E2_space_6_space_1_space_52.sbmlRole="species";
  E2_space_6_space_1_space_52.sbmlCompartment="uVol";
  E2_space_7_space_8_space_8.sbmlRole="species";
  E2_space_7_space_8_space_8.sbmlCompartment="uVol";
  E6_space_1_space_1_space_11.sbmlRole="species";
  E6_space_1_space_1_space_11.sbmlCompartment="uVol";
  E2_space_1_space_2_space_1.sbmlRole="species";
  E2_space_1_space_2_space_1.sbmlCompartment="uVol";
  E1_space_8_space_1_space_4.sbmlRole="species";
  E1_space_8_space_1_space_4.sbmlCompartment="uVol";
  Dihydrolipoylprotein.sbmlRole="species";
  Dihydrolipoylprotein.sbmlCompartment="uVol";
  Lipoylprotein.sbmlRole="species";
  Lipoylprotein.sbmlCompartment="uVol";
  L_minus_Threonyl_minus_tRNA_space_Thr_space_.sbmlRole="species";
  L_minus_Threonyl_minus_tRNA_space_Thr_space_.sbmlCompartment="uVol";
  Phosphatidylethanolamine.sbmlRole="species";
  Phosphatidylethanolamine.sbmlCompartment="uVol";
  space_3_minus_Phosphonooxypyruvate.sbmlRole="species";
  space_3_minus_Phosphonooxypyruvate.sbmlCompartment="uVol";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlRole="species";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlCompartment="uVol";
  Phosphatidylserine.sbmlRole="species";
  Phosphatidylserine.sbmlCompartment="uVol";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlRole="species";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlCompartment="uVol";
  O_minus_Phospho_minus_L_minus_serine.sbmlRole="species";
  O_minus_Phospho_minus_L_minus_serine.sbmlCompartment="uVol";
  Glycine.sbmlRole="species";
  Glycine.sbmlCompartment="uVol";
  L_minus_Serine.sbmlRole="species";
  L_minus_Serine.sbmlCompartment="uVol";
  L_minus_Threonine.sbmlRole="species";
  L_minus_Threonine.sbmlCompartment="uVol";
  space_5_space_10_minus_Methylenetetrahydrofolate.sbmlRole="species";
  space_5_space_10_minus_Methylenetetrahydrofolate.sbmlCompartment="uVol";
  R00945.sbmlRole="rate";
  R00945.kf.sbmlRole="rate";
  R00945.kb.sbmlRole="rate";
  R03654.sbmlRole="rate";
  R03654.kf.sbmlRole="rate";
  R03654.kb.sbmlRole="rate";
  R03662.sbmlRole="rate";
  R03662.kf.sbmlRole="rate";
  R03662.kb.sbmlRole="rate";
  R04173.sbmlRole="rate";
  R04173.kf.sbmlRole="rate";
  R04173.kb.sbmlRole="rate";
  R01800.sbmlRole="rate";
  R01800.kf.sbmlRole="rate";
  R01800.kb.sbmlRole="rate";
  R02055.sbmlRole="rate";
  R02055.kf.sbmlRole="rate";
  R02055.kb.sbmlRole="rate";
  R03815.sbmlRole="rate";
  R03815.kf.sbmlRole="rate";
  R03815.kb.sbmlRole="rate";
  R03663.sbmlRole="rate";
  R03663.kf.sbmlRole="rate";
  R03663.kb.sbmlRole="rate";
}