// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03646: L_minus_Arginine => L_minus_Arginyl_minus_tRNA_space_Arg_space_ 
// R03661: L_minus_Proline <=> L_minus_Prolyl_minus_tRNA_space_Pro_space_ 
// R05052: L_minus_erythro_minus_4_minus_Hydroxyglutamate <=> D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_6_space_1_space_1 = 0 M;
  real E6_space_1_space_1_space_15 = 0 M;
  real E6_space_1_space_1_space_19 = 0 M;
  real D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate(time) M;
  real L_minus_Prolyl_minus_tRNA_space_Pro_space_(time) M;
  real L_minus_erythro_minus_4_minus_Hydroxyglutamate(time) M;
  real L_minus_Proline(time) M;
  real L_minus_Arginine(time) M;
  real L_minus_Arginyl_minus_tRNA_space_Arg_space_(time) M;
  real R03646(time) katal;
  extern real R03646.kf;
  extern real R03646.kb;
  real R03661(time) katal;
  extern real R03661.kf;
  extern real R03661.kb;
  real R05052(time) katal;
  extern real R05052.kf;
  extern real R05052.kb;

  // equations
  when (time=time.min) D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate = 0;
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate:time = (R05052)/uVol;
  when (time=time.min) L_minus_Prolyl_minus_tRNA_space_Pro_space_ = 0;
  L_minus_Prolyl_minus_tRNA_space_Pro_space_:time = (R03661)/uVol;
  when (time=time.min) L_minus_erythro_minus_4_minus_Hydroxyglutamate = 0;
  L_minus_erythro_minus_4_minus_Hydroxyglutamate:time = (-1*R05052)/uVol;
  when (time=time.min) L_minus_Proline = 0;
  L_minus_Proline:time = (-1*R03661)/uVol;
  when (time=time.min) L_minus_Arginine = 0;
  L_minus_Arginine:time = (-1*R03646)/uVol;
  when (time=time.min) L_minus_Arginyl_minus_tRNA_space_Arg_space_ = 0;
  L_minus_Arginyl_minus_tRNA_space_Arg_space_:time = (R03646)/uVol;
  R03646 = R03646.kf*L_minus_Arginine - R03646.kb*L_minus_Arginyl_minus_tRNA_space_Arg_space_;
  R03661 = R03661.kf*L_minus_Proline - R03661.kb*L_minus_Prolyl_minus_tRNA_space_Pro_space_;
  R05052 = R05052.kf*L_minus_erythro_minus_4_minus_Hydroxyglutamate - R05052.kb*D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_15.sbmlRole="species";
  E6_space_1_space_1_space_15.sbmlCompartment="uVol";
  E6_space_1_space_1_space_19.sbmlRole="species";
  E6_space_1_space_1_space_19.sbmlCompartment="uVol";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlRole="species";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlCompartment="uVol";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlRole="species";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlCompartment="uVol";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlRole="species";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlCompartment="uVol";
  L_minus_Proline.sbmlRole="species";
  L_minus_Proline.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlRole="species";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlCompartment="uVol";
  R03646.sbmlRole="rate";
  R03646.kf.sbmlRole="rate";
  R03646.kb.sbmlRole="rate";
  R03661.sbmlRole="rate";
  R03661.kf.sbmlRole="rate";
  R03661.kb.sbmlRole="rate";
  R05052.sbmlRole="rate";
  R05052.kf.sbmlRole="rate";
  R05052.kb.sbmlRole="rate";
}