// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00734: L_minus_Tyrosine => space_3_minus_space_4_minus_Hydroxyphenyl_space_pyruvate 
// R01826: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate <=> Phosphoenolpyruvate D_minus_Erythrose_space_4_minus_phosphate 
// R02918: L_minus_Tyrosine <=> L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_ 
// R03084: space_3_minus_Dehydroquinate => space_3_minus_Dehydroshikimate 
// R03083: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate <=> space_3_minus_Dehydroquinate 
// R02412: Shikimate <=> Shikimate_space_3_minus_phosphate 
// R02413: Shikimate => space_3_minus_Dehydroshikimate 
// R03460: Shikimate_space_3_minus_phosphate => space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate 
// R01714: space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate <=> Chorismate 
// R00694: Phenylpyruvate => L_minus_Phenylalanine 
// R03660: L_minus_Phenylalanine <=> L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_ 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_5_space_1_space_54 = 0 M;
  real E4_space_2_space_3_space_4 = 0 M;
  real E4_space_2_space_1_space_10 = 0 M;
  real E1_space_1_space_1_space_25 = 0 M;
  real E2_space_7_space_1_space_71 = 0 M;
  real E2_space_5_space_1_space_19 = 0 M;
  real E4_space_2_space_3_space_5 = 0 M;
  real E6_space_1_space_1_space_20 = 0 M;
  real E2_space_6_space_1_space_9 = 0 M;
  real E2_space_6_space_1_space_1 = 0 M;
  real E6_space_1_space_1_space_1 = 0 M;
  real D_minus_Erythrose_space_4_minus_phosphate(time) M;
  real space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate(time) M;
  real space_3_minus_Dehydroquinate(time) M;
  real Phosphoenolpyruvate(time) M;
  real Shikimate_space_3_minus_phosphate(time) M;
  real Shikimate(time) M;
  real space_3_minus_Dehydroshikimate(time) M;
  real space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate(time) M;
  real L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_(time) M;
  real Chorismate(time) M;
  real L_minus_Phenylalanine(time) M;
  real Phenylpyruvate(time) M;
  real L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_(time) M;
  real L_minus_Tyrosine(time) M;
  real space_3_minus_space_4_minus_Hydroxyphenyl_space_pyruvate(time) M;
  real R00734(time) katal;
  extern real R00734.kf;
  extern real R00734.kb;
  real R01826(time) katal;
  extern real R01826.kf;
  extern real R01826.kb;
  real R02918(time) katal;
  extern real R02918.kf;
  extern real R02918.kb;
  real R03084(time) katal;
  extern real R03084.kf;
  extern real R03084.kb;
  real R03083(time) katal;
  extern real R03083.kf;
  extern real R03083.kb;
  real R02412(time) katal;
  extern real R02412.kf;
  extern real R02412.kb;
  real R02413(time) katal;
  extern real R02413.kf;
  extern real R02413.kb;
  real R03460(time) katal;
  extern real R03460.kf;
  extern real R03460.kb;
  real R01714(time) katal;
  extern real R01714.kf;
  extern real R01714.kb;
  real R00694(time) katal;
  extern real R00694.kf;
  extern real R00694.kb;
  real R03660(time) katal;
  extern real R03660.kf;
  extern real R03660.kb;

  // equations
  when (time=time.min) D_minus_Erythrose_space_4_minus_phosphate = 0;
  D_minus_Erythrose_space_4_minus_phosphate:time = (R01826)/uVol;
  when (time=time.min) space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate = 0;
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate:time = (-1*R01826 + -1*R03083)/uVol;
  when (time=time.min) space_3_minus_Dehydroquinate = 0;
  space_3_minus_Dehydroquinate:time = (-1*R03084 + R03083)/uVol;
  when (time=time.min) Phosphoenolpyruvate = 0;
  Phosphoenolpyruvate:time = (R01826)/uVol;
  when (time=time.min) Shikimate_space_3_minus_phosphate = 0;
  Shikimate_space_3_minus_phosphate:time = (R02412 + -1*R03460)/uVol;
  when (time=time.min) Shikimate = 0;
  Shikimate:time = (-1*R02412 + -1*R02413)/uVol;
  when (time=time.min) space_3_minus_Dehydroshikimate = 0;
  space_3_minus_Dehydroshikimate:time = (R03084 + R02413)/uVol;
  when (time=time.min) space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate = 0;
  space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate:time = (R03460 + -1*R01714)/uVol;
  when (time=time.min) L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_ = 0;
  L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_:time = (R03660)/uVol;
  when (time=time.min) Chorismate = 0;
  Chorismate:time = (R01714)/uVol;
  when (time=time.min) L_minus_Phenylalanine = 0;
  L_minus_Phenylalanine:time = (R00694 + -1*R03660)/uVol;
  when (time=time.min) Phenylpyruvate = 0;
  Phenylpyruvate:time = (-1*R00694)/uVol;
  when (time=time.min) L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_ = 0;
  L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_:time = (R02918)/uVol;
  when (time=time.min) L_minus_Tyrosine = 0;
  L_minus_Tyrosine:time = (-1*R00734 + -1*R02918)/uVol;
  when (time=time.min) space_3_minus_space_4_minus_Hydroxyphenyl_space_pyruvate = 0;
  space_3_minus_space_4_minus_Hydroxyphenyl_space_pyruvate:time = (R00734)/uVol;
  R00734 = R00734.kf*L_minus_Tyrosine - R00734.kb*space_3_minus_space_4_minus_Hydroxyphenyl_space_pyruvate;
  R01826 = R01826.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate - R01826.kb*Phosphoenolpyruvate*D_minus_Erythrose_space_4_minus_phosphate;
  R02918 = R02918.kf*L_minus_Tyrosine - R02918.kb*L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_;
  R03084 = R03084.kf*space_3_minus_Dehydroquinate - R03084.kb*space_3_minus_Dehydroshikimate;
  R03083 = R03083.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate - R03083.kb*space_3_minus_Dehydroquinate;
  R02412 = R02412.kf*Shikimate - R02412.kb*Shikimate_space_3_minus_phosphate;
  R02413 = R02413.kf*Shikimate - R02413.kb*space_3_minus_Dehydroshikimate;
  R03460 = R03460.kf*Shikimate_space_3_minus_phosphate - R03460.kb*space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate;
  R01714 = R01714.kf*space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate - R01714.kb*Chorismate;
  R00694 = R00694.kf*Phenylpyruvate - R00694.kb*L_minus_Phenylalanine;
  R03660 = R03660.kf*L_minus_Phenylalanine - R03660.kb*L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_5_space_1_space_54.sbmlRole="species";
  E2_space_5_space_1_space_54.sbmlCompartment="uVol";
  E4_space_2_space_3_space_4.sbmlRole="species";
  E4_space_2_space_3_space_4.sbmlCompartment="uVol";
  E4_space_2_space_1_space_10.sbmlRole="species";
  E4_space_2_space_1_space_10.sbmlCompartment="uVol";
  E1_space_1_space_1_space_25.sbmlRole="species";
  E1_space_1_space_1_space_25.sbmlCompartment="uVol";
  E2_space_7_space_1_space_71.sbmlRole="species";
  E2_space_7_space_1_space_71.sbmlCompartment="uVol";
  E2_space_5_space_1_space_19.sbmlRole="species";
  E2_space_5_space_1_space_19.sbmlCompartment="uVol";
  E4_space_2_space_3_space_5.sbmlRole="species";
  E4_space_2_space_3_space_5.sbmlCompartment="uVol";
  E6_space_1_space_1_space_20.sbmlRole="species";
  E6_space_1_space_1_space_20.sbmlCompartment="uVol";
  E2_space_6_space_1_space_9.sbmlRole="species";
  E2_space_6_space_1_space_9.sbmlCompartment="uVol";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_1.sbmlRole="species";
  E6_space_1_space_1_space_1.sbmlCompartment="uVol";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlRole="species";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlCompartment="uVol";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate.sbmlRole="species";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_arabino_minus_heptonate_space_7_minus_phosphate.sbmlCompartment="uVol";
  space_3_minus_Dehydroquinate.sbmlRole="species";
  space_3_minus_Dehydroquinate.sbmlCompartment="uVol";
  Phosphoenolpyruvate.sbmlRole="species";
  Phosphoenolpyruvate.sbmlCompartment="uVol";
  Shikimate_space_3_minus_phosphate.sbmlRole="species";
  Shikimate_space_3_minus_phosphate.sbmlCompartment="uVol";
  Shikimate.sbmlRole="species";
  Shikimate.sbmlCompartment="uVol";
  space_3_minus_Dehydroshikimate.sbmlRole="species";
  space_3_minus_Dehydroshikimate.sbmlCompartment="uVol";
  space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate.sbmlRole="species";
  space_5_minus_O_minus_space_1_minus_Carboxyvinyl_space_minus_3_minus_phosphoshikimate.sbmlCompartment="uVol";
  L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_.sbmlRole="species";
  L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_.sbmlCompartment="uVol";
  Chorismate.sbmlRole="species";
  Chorismate.sbmlCompartment="uVol";
  L_minus_Phenylalanine.sbmlRole="species";
  L_minus_Phenylalanine.sbmlCompartment="uVol";
  Phenylpyruvate.sbmlRole="species";
  Phenylpyruvate.sbmlCompartment="uVol";
  L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_.sbmlRole="species";
  L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_.sbmlCompartment="uVol";
  L_minus_Tyrosine.sbmlRole="species";
  L_minus_Tyrosine.sbmlCompartment="uVol";
  space_3_minus_space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlRole="species";
  space_3_minus_space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlCompartment="uVol";
  R00734.sbmlRole="rate";
  R00734.kf.sbmlRole="rate";
  R00734.kb.sbmlRole="rate";
  R01826.sbmlRole="rate";
  R01826.kf.sbmlRole="rate";
  R01826.kb.sbmlRole="rate";
  R02918.sbmlRole="rate";
  R02918.kf.sbmlRole="rate";
  R02918.kb.sbmlRole="rate";
  R03084.sbmlRole="rate";
  R03084.kf.sbmlRole="rate";
  R03084.kb.sbmlRole="rate";
  R03083.sbmlRole="rate";
  R03083.kf.sbmlRole="rate";
  R03083.kb.sbmlRole="rate";
  R02412.sbmlRole="rate";
  R02412.kf.sbmlRole="rate";
  R02412.kb.sbmlRole="rate";
  R02413.sbmlRole="rate";
  R02413.kf.sbmlRole="rate";
  R02413.kb.sbmlRole="rate";
  R03460.sbmlRole="rate";
  R03460.kf.sbmlRole="rate";
  R03460.kb.sbmlRole="rate";
  R01714.sbmlRole="rate";
  R01714.kf.sbmlRole="rate";
  R01714.kb.sbmlRole="rate";
  R00694.sbmlRole="rate";
  R00694.kf.sbmlRole="rate";
  R00694.kb.sbmlRole="rate";
  R03660.sbmlRole="rate";
  R03660.kf.sbmlRole="rate";
  R03660.kb.sbmlRole="rate";
}