// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04941: Selenocystathionine <=> Selenohomocysteine 
// R03596: Selenide <=> Selenite 
// R03601: O_minus_Acetyl_minus_L_minus_serine Selenide <=> Selenocysteine Acetate 
// R04928: Adenylylselenate <=> space_3_space_minus_Phosphoadenylylselenate 
// R04773: Selenomethionine <=> Selenomethionyl_minus_tRNA_space_Met_space_ 
// R03599: Selenocysteine => Selenide L_minus_Alanine 
// R04944: Selenocysteine <=> Selenocystathionine 
// R04929: Selenate => Adenylylselenate 
// R04771: Selenomethionine <=> Se_minus_Adenosylselenomethionine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E6_space_1_space_1_space_10 = 0 M;
  real E2_space_5_space_1_space_48 = 0 M;
  real E4_space_4_space_1_space_8 = 0 M;
  real E2_space_5_space_1_space_6 = 0 M;
  real E4_space_4_space_1_space_16 = 0 M;
  real E2_space_5_space_1_space_47 = 0 M;
  real E1_space_8_space_1_space_2 = 0 M;
  real E2_space_7_space_7_space_4 = 0 M;
  real E2_space_7_space_1_space_25 = 0 M;
  real Selenomethionyl_minus_tRNA_space_Met_space_(time) M;
  real Selenocysteine(time) M;
  real Selenocystathionine(time) M;
  real Selenohomocysteine(time) M;
  real Selenomethionine(time) M;
  real Se_minus_Adenosylselenomethionine(time) M;
  real Acetate(time) M;
  real L_minus_Alanine(time) M;
  real O_minus_Acetyl_minus_L_minus_serine(time) M;
  real Selenide(time) M;
  real Selenite(time) M;
  real Selenate(time) M;
  real Adenylylselenate(time) M;
  real space_3_space_minus_Phosphoadenylylselenate(time) M;
  real R04941(time) katal;
  extern real R04941.kf;
  extern real R04941.kb;
  real R03596(time) katal;
  extern real R03596.kf;
  extern real R03596.kb;
  real R03601(time) katal;
  extern real R03601.kf;
  extern real R03601.kb;
  real R04928(time) katal;
  extern real R04928.kf;
  extern real R04928.kb;
  real R04773(time) katal;
  extern real R04773.kf;
  extern real R04773.kb;
  real R03599(time) katal;
  extern real R03599.kf;
  extern real R03599.kb;
  real R04944(time) katal;
  extern real R04944.kf;
  extern real R04944.kb;
  real R04929(time) katal;
  extern real R04929.kf;
  extern real R04929.kb;
  real R04771(time) katal;
  extern real R04771.kf;
  extern real R04771.kb;

  // equations
  when (time=time.min) Selenomethionyl_minus_tRNA_space_Met_space_ = 0;
  Selenomethionyl_minus_tRNA_space_Met_space_:time = (R04773)/uVol;
  when (time=time.min) Selenocysteine = 0;
  Selenocysteine:time = (R03601 + -1*R03599 + -1*R04944)/uVol;
  when (time=time.min) Selenocystathionine = 0;
  Selenocystathionine:time = (-1*R04941 + R04944)/uVol;
  when (time=time.min) Selenohomocysteine = 0;
  Selenohomocysteine:time = (R04941)/uVol;
  when (time=time.min) Selenomethionine = 0;
  Selenomethionine:time = (-1*R04773 + -1*R04771)/uVol;
  when (time=time.min) Se_minus_Adenosylselenomethionine = 0;
  Se_minus_Adenosylselenomethionine:time = (R04771)/uVol;
  when (time=time.min) Acetate = 0;
  Acetate:time = (R03601)/uVol;
  when (time=time.min) L_minus_Alanine = 0;
  L_minus_Alanine:time = (R03599)/uVol;
  when (time=time.min) O_minus_Acetyl_minus_L_minus_serine = 0;
  O_minus_Acetyl_minus_L_minus_serine:time = (-1*R03601)/uVol;
  when (time=time.min) Selenide = 0;
  Selenide:time = (-1*R03596 + -1*R03601 + R03599)/uVol;
  when (time=time.min) Selenite = 0;
  Selenite:time = (R03596)/uVol;
  when (time=time.min) Selenate = 0;
  Selenate:time = (-1*R04929)/uVol;
  when (time=time.min) Adenylylselenate = 0;
  Adenylylselenate:time = (-1*R04928 + R04929)/uVol;
  when (time=time.min) space_3_space_minus_Phosphoadenylylselenate = 0;
  space_3_space_minus_Phosphoadenylylselenate:time = (R04928)/uVol;
  R04941 = R04941.kf*Selenocystathionine - R04941.kb*Selenohomocysteine;
  R03596 = R03596.kf*Selenide - R03596.kb*Selenite;
  R03601 = R03601.kf*O_minus_Acetyl_minus_L_minus_serine*Selenide - R03601.kb*Selenocysteine*Acetate;
  R04928 = R04928.kf*Adenylylselenate - R04928.kb*space_3_space_minus_Phosphoadenylylselenate;
  R04773 = R04773.kf*Selenomethionine - R04773.kb*Selenomethionyl_minus_tRNA_space_Met_space_;
  R03599 = R03599.kf*Selenocysteine - R03599.kb*Selenide*L_minus_Alanine;
  R04944 = R04944.kf*Selenocysteine - R04944.kb*Selenocystathionine;
  R04929 = R04929.kf*Selenate - R04929.kb*Adenylylselenate;
  R04771 = R04771.kf*Selenomethionine - R04771.kb*Se_minus_Adenosylselenomethionine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E6_space_1_space_1_space_10.sbmlRole="species";
  E6_space_1_space_1_space_10.sbmlCompartment="uVol";
  E2_space_5_space_1_space_48.sbmlRole="species";
  E2_space_5_space_1_space_48.sbmlCompartment="uVol";
  E4_space_4_space_1_space_8.sbmlRole="species";
  E4_space_4_space_1_space_8.sbmlCompartment="uVol";
  E2_space_5_space_1_space_6.sbmlRole="species";
  E2_space_5_space_1_space_6.sbmlCompartment="uVol";
  E4_space_4_space_1_space_16.sbmlRole="species";
  E4_space_4_space_1_space_16.sbmlCompartment="uVol";
  E2_space_5_space_1_space_47.sbmlRole="species";
  E2_space_5_space_1_space_47.sbmlCompartment="uVol";
  E1_space_8_space_1_space_2.sbmlRole="species";
  E1_space_8_space_1_space_2.sbmlCompartment="uVol";
  E2_space_7_space_7_space_4.sbmlRole="species";
  E2_space_7_space_7_space_4.sbmlCompartment="uVol";
  E2_space_7_space_1_space_25.sbmlRole="species";
  E2_space_7_space_1_space_25.sbmlCompartment="uVol";
  Selenomethionyl_minus_tRNA_space_Met_space_.sbmlRole="species";
  Selenomethionyl_minus_tRNA_space_Met_space_.sbmlCompartment="uVol";
  Selenocysteine.sbmlRole="species";
  Selenocysteine.sbmlCompartment="uVol";
  Selenocystathionine.sbmlRole="species";
  Selenocystathionine.sbmlCompartment="uVol";
  Selenohomocysteine.sbmlRole="species";
  Selenohomocysteine.sbmlCompartment="uVol";
  Selenomethionine.sbmlRole="species";
  Selenomethionine.sbmlCompartment="uVol";
  Se_minus_Adenosylselenomethionine.sbmlRole="species";
  Se_minus_Adenosylselenomethionine.sbmlCompartment="uVol";
  Acetate.sbmlRole="species";
  Acetate.sbmlCompartment="uVol";
  L_minus_Alanine.sbmlRole="species";
  L_minus_Alanine.sbmlCompartment="uVol";
  O_minus_Acetyl_minus_L_minus_serine.sbmlRole="species";
  O_minus_Acetyl_minus_L_minus_serine.sbmlCompartment="uVol";
  Selenide.sbmlRole="species";
  Selenide.sbmlCompartment="uVol";
  Selenite.sbmlRole="species";
  Selenite.sbmlCompartment="uVol";
  Selenate.sbmlRole="species";
  Selenate.sbmlCompartment="uVol";
  Adenylylselenate.sbmlRole="species";
  Adenylylselenate.sbmlCompartment="uVol";
  space_3_space_minus_Phosphoadenylylselenate.sbmlRole="species";
  space_3_space_minus_Phosphoadenylylselenate.sbmlCompartment="uVol";
  R04941.sbmlRole="rate";
  R04941.kf.sbmlRole="rate";
  R04941.kb.sbmlRole="rate";
  R03596.sbmlRole="rate";
  R03596.kf.sbmlRole="rate";
  R03596.kb.sbmlRole="rate";
  R03601.sbmlRole="rate";
  R03601.kf.sbmlRole="rate";
  R03601.kb.sbmlRole="rate";
  R04928.sbmlRole="rate";
  R04928.kf.sbmlRole="rate";
  R04928.kb.sbmlRole="rate";
  R04773.sbmlRole="rate";
  R04773.kf.sbmlRole="rate";
  R04773.kb.sbmlRole="rate";
  R03599.sbmlRole="rate";
  R03599.kf.sbmlRole="rate";
  R03599.kb.sbmlRole="rate";
  R04944.sbmlRole="rate";
  R04944.kf.sbmlRole="rate";
  R04944.kb.sbmlRole="rate";
  R04929.sbmlRole="rate";
  R04929.kf.sbmlRole="rate";
  R04929.kb.sbmlRole="rate";
  R04771.sbmlRole="rate";
  R04771.kf.sbmlRole="rate";
  R04771.kb.sbmlRole="rate";
}