// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01049: D_minus_Ribose_space_5_minus_phosphate <=> space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate 
// R00086: ATP <=> ADP 
// R00127: AMP => ADP 
// R00376: dGTP => DNA 
// R00185: Adenosine => AMP 
// R01229: Guanine => GMP 
// R01137: dADP => dATP 
// R00124: ADP => ATP 
// R03530: dIDP => dITP 
// R00441: GTP => RNA 
// R01547: dAMP => dADP 
// R00435: ATP => RNA 
// R00200: ATP => ADP 
// R01138: dATP => dADP 
// R01858: dGTP <=> dGDP 
// R00336: Guanosine_space_3_space_space_5_space_minus_bis_space_diphosphate_space_ => GDP 
// R00430: GTP => GDP 
// R00722: IDP => ITP 
// R01857: dGDP => dGTP 
// R00330: GDP => GTP 
// R00439: RNA => GDP 
// R04378: space_1_minus_space_5_space_minus_Phosphoribosyl_space_minus_5_minus_amino_minus_4_minus_imidazolecarboxamide => space_5_minus_Amino_minus_4_minus_imidazolecarboxyamide 
// R00375: dATP => DNA 
// R00190: AMP => Adenine 
// R00437: RNA => ADP 
// R01230: Xanthosine_space_5_space_minus_phosphate <=> GMP 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_4_space_2_space_7 = 0 M;
  real E2_space_7_space_4_space_6 = 0 M;
  real E2_space_7_space_1_space_40 = 0 M;
  real E3_space_1_space_7_space_2 = 0 M;
  real E2_space_7_space_7_space_7 = 0 M;
  real E2_space_7_space_7_space_8 = 0 M;
  real E2_space_7_space_7_space_6 = 0 M;
  real E2_space_7_space_4_space_3 = 0 M;
  real E3_space_6_space_1_space_15 = 0 M;
  real E2_space_7_space_6_space_1 = 0 M;
  real E2_space_7_space_1_space_74 = 0 M;
  real E6_space_3_space_5_space_2 = 0 M;
  real GDP(time) M;
  real dGDP(time) M;
  real dIDP(time) M;
  real GTP(time) M;
  real dGTP(time) M;
  real dITP(time) M;
  real Guanosine_space_3_space_space_5_space_minus_bis_space_diphosphate_space_(time) M;
  real RNA(time) M;
  real DNA(time) M;
  real ATP(time) M;
  real dATP(time) M;
  real ADP(time) M;
  real dADP(time) M;
  real dAMP(time) M;
  real D_minus_Ribose_space_5_minus_phosphate(time) M;
  real space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate(time) M;
  real AMP(time) M;
  real Adenosine(time) M;
  real Adenine(time) M;
  real space_1_minus_space_5_space_minus_Phosphoribosyl_space_minus_5_minus_amino_minus_4_minus_imidazolecarboxamide(time) M;
  real space_5_minus_Amino_minus_4_minus_imidazolecarboxyamide(time) M;
  real IDP(time) M;
  real Xanthosine_space_5_space_minus_phosphate(time) M;
  real ITP(time) M;
  real GMP(time) M;
  real Guanine(time) M;
  real R01049(time) katal;
  extern real R01049.kf;
  extern real R01049.kb;
  real R00086(time) katal;
  extern real R00086.kf;
  extern real R00086.kb;
  real R00127(time) katal;
  extern real R00127.kf;
  extern real R00127.kb;
  real R00376(time) katal;
  extern real R00376.kf;
  extern real R00376.kb;
  real R00185(time) katal;
  extern real R00185.kf;
  extern real R00185.kb;
  real R01229(time) katal;
  extern real R01229.kf;
  extern real R01229.kb;
  real R01137(time) katal;
  extern real R01137.kf;
  extern real R01137.kb;
  real R00124(time) katal;
  extern real R00124.kf;
  extern real R00124.kb;
  real R03530(time) katal;
  extern real R03530.kf;
  extern real R03530.kb;
  real R00441(time) katal;
  extern real R00441.kf;
  extern real R00441.kb;
  real R01547(time) katal;
  extern real R01547.kf;
  extern real R01547.kb;
  real R00435(time) katal;
  extern real R00435.kf;
  extern real R00435.kb;
  real R00200(time) katal;
  extern real R00200.kf;
  extern real R00200.kb;
  real R01138(time) katal;
  extern real R01138.kf;
  extern real R01138.kb;
  real R01858(time) katal;
  extern real R01858.kf;
  extern real R01858.kb;
  real R00336(time) katal;
  extern real R00336.kf;
  extern real R00336.kb;
  real R00430(time) katal;
  extern real R00430.kf;
  extern real R00430.kb;
  real R00722(time) katal;
  extern real R00722.kf;
  extern real R00722.kb;
  real R01857(time) katal;
  extern real R01857.kf;
  extern real R01857.kb;
  real R00330(time) katal;
  extern real R00330.kf;
  extern real R00330.kb;
  real R00439(time) katal;
  extern real R00439.kf;
  extern real R00439.kb;
  real R04378(time) katal;
  extern real R04378.kf;
  extern real R04378.kb;
  real R00375(time) katal;
  extern real R00375.kf;
  extern real R00375.kb;
  real R00190(time) katal;
  extern real R00190.kf;
  extern real R00190.kb;
  real R00437(time) katal;
  extern real R00437.kf;
  extern real R00437.kb;
  real R01230(time) katal;
  extern real R01230.kf;
  extern real R01230.kb;

  // equations
  when (time=time.min) GDP = 0;
  GDP:time = (R00336 + R00430 + -1*R00330 + R00439)/uVol;
  when (time=time.min) dGDP = 0;
  dGDP:time = (R01858 + -1*R01857)/uVol;
  when (time=time.min) dIDP = 0;
  dIDP:time = (-1*R03530)/uVol;
  when (time=time.min) GTP = 0;
  GTP:time = (-1*R00441 + -1*R00430 + R00330)/uVol;
  when (time=time.min) dGTP = 0;
  dGTP:time = (-1*R00376 + -1*R01858 + R01857)/uVol;
  when (time=time.min) dITP = 0;
  dITP:time = (R03530)/uVol;
  when (time=time.min) Guanosine_space_3_space_space_5_space_minus_bis_space_diphosphate_space_ = 0;
  Guanosine_space_3_space_space_5_space_minus_bis_space_diphosphate_space_:time = (-1*R00336)/uVol;
  when (time=time.min) RNA = 0;
  RNA:time = (R00441 + R00435 + -1*R00439 + -1*R00437)/uVol;
  when (time=time.min) DNA = 0;
  DNA:time = (R00376 + R00375)/uVol;
  when (time=time.min) ATP = 0;
  ATP:time = (-1*R00086 + R00124 + -1*R00435 + -1*R00200)/uVol;
  when (time=time.min) dATP = 0;
  dATP:time = (R01137 + -1*R01138 + -1*R00375)/uVol;
  when (time=time.min) ADP = 0;
  ADP:time = (R00086 + R00127 + -1*R00124 + R00200 + R00437)/uVol;
  when (time=time.min) dADP = 0;
  dADP:time = (-1*R01137 + R01547 + R01138)/uVol;
  when (time=time.min) dAMP = 0;
  dAMP:time = (-1*R01547)/uVol;
  when (time=time.min) D_minus_Ribose_space_5_minus_phosphate = 0;
  D_minus_Ribose_space_5_minus_phosphate:time = (-1*R01049)/uVol;
  when (time=time.min) space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate = 0;
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate:time = (R01049)/uVol;
  when (time=time.min) AMP = 0;
  AMP:time = (-1*R00127 + R00185 + -1*R00190)/uVol;
  when (time=time.min) Adenosine = 0;
  Adenosine:time = (-1*R00185)/uVol;
  when (time=time.min) Adenine = 0;
  Adenine:time = (R00190)/uVol;
  when (time=time.min) space_1_minus_space_5_space_minus_Phosphoribosyl_space_minus_5_minus_amino_minus_4_minus_imidazolecarboxamide = 0;
  space_1_minus_space_5_space_minus_Phosphoribosyl_space_minus_5_minus_amino_minus_4_minus_imidazolecarboxamide:time = (-1*R04378)/uVol;
  when (time=time.min) space_5_minus_Amino_minus_4_minus_imidazolecarboxyamide = 0;
  space_5_minus_Amino_minus_4_minus_imidazolecarboxyamide:time = (R04378)/uVol;
  when (time=time.min) IDP = 0;
  IDP:time = (-1*R00722)/uVol;
  when (time=time.min) Xanthosine_space_5_space_minus_phosphate = 0;
  Xanthosine_space_5_space_minus_phosphate:time = (-1*R01230)/uVol;
  when (time=time.min) ITP = 0;
  ITP:time = (R00722)/uVol;
  when (time=time.min) GMP = 0;
  GMP:time = (R01229 + R01230)/uVol;
  when (time=time.min) Guanine = 0;
  Guanine:time = (-1*R01229)/uVol;
  R01049 = R01049.kf*D_minus_Ribose_space_5_minus_phosphate - R01049.kb*space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate;
  R00086 = R00086.kf*ATP - R00086.kb*ADP;
  R00127 = R00127.kf*AMP - R00127.kb*ADP;
  R00376 = R00376.kf*dGTP - R00376.kb*DNA;
  R00185 = R00185.kf*Adenosine - R00185.kb*AMP;
  R01229 = R01229.kf*Guanine - R01229.kb*GMP;
  R01137 = R01137.kf*dADP - R01137.kb*dATP;
  R00124 = R00124.kf*ADP - R00124.kb*ATP;
  R03530 = R03530.kf*dIDP - R03530.kb*dITP;
  R00441 = R00441.kf*GTP - R00441.kb*RNA;
  R01547 = R01547.kf*dAMP - R01547.kb*dADP;
  R00435 = R00435.kf*ATP - R00435.kb*RNA;
  R00200 = R00200.kf*ATP - R00200.kb*ADP;
  R01138 = R01138.kf*dATP - R01138.kb*dADP;
  R01858 = R01858.kf*dGTP - R01858.kb*dGDP;
  R00336 = R00336.kf*Guanosine_space_3_space_space_5_space_minus_bis_space_diphosphate_space_ - R00336.kb*GDP;
  R00430 = R00430.kf*GTP - R00430.kb*GDP;
  R00722 = R00722.kf*IDP - R00722.kb*ITP;
  R01857 = R01857.kf*dGDP - R01857.kb*dGTP;
  R00330 = R00330.kf*GDP - R00330.kb*GTP;
  R00439 = R00439.kf*RNA - R00439.kb*GDP;
  R04378 = R04378.kf*space_1_minus_space_5_space_minus_Phosphoribosyl_space_minus_5_minus_amino_minus_4_minus_imidazolecarboxamide - R04378.kb*space_5_minus_Amino_minus_4_minus_imidazolecarboxyamide;
  R00375 = R00375.kf*dATP - R00375.kb*DNA;
  R00190 = R00190.kf*AMP - R00190.kb*Adenine;
  R00437 = R00437.kf*RNA - R00437.kb*ADP;
  R01230 = R01230.kf*Xanthosine_space_5_space_minus_phosphate - R01230.kb*GMP;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_4_space_2_space_7.sbmlRole="species";
  E2_space_4_space_2_space_7.sbmlCompartment="uVol";
  E2_space_7_space_4_space_6.sbmlRole="species";
  E2_space_7_space_4_space_6.sbmlCompartment="uVol";
  E2_space_7_space_1_space_40.sbmlRole="species";
  E2_space_7_space_1_space_40.sbmlCompartment="uVol";
  E3_space_1_space_7_space_2.sbmlRole="species";
  E3_space_1_space_7_space_2.sbmlCompartment="uVol";
  E2_space_7_space_7_space_7.sbmlRole="species";
  E2_space_7_space_7_space_7.sbmlCompartment="uVol";
  E2_space_7_space_7_space_8.sbmlRole="species";
  E2_space_7_space_7_space_8.sbmlCompartment="uVol";
  E2_space_7_space_7_space_6.sbmlRole="species";
  E2_space_7_space_7_space_6.sbmlCompartment="uVol";
  E2_space_7_space_4_space_3.sbmlRole="species";
  E2_space_7_space_4_space_3.sbmlCompartment="uVol";
  E3_space_6_space_1_space_15.sbmlRole="species";
  E3_space_6_space_1_space_15.sbmlCompartment="uVol";
  E2_space_7_space_6_space_1.sbmlRole="species";
  E2_space_7_space_6_space_1.sbmlCompartment="uVol";
  E2_space_7_space_1_space_74.sbmlRole="species";
  E2_space_7_space_1_space_74.sbmlCompartment="uVol";
  E6_space_3_space_5_space_2.sbmlRole="species";
  E6_space_3_space_5_space_2.sbmlCompartment="uVol";
  GDP.sbmlRole="species";
  GDP.sbmlCompartment="uVol";
  dGDP.sbmlRole="species";
  dGDP.sbmlCompartment="uVol";
  dIDP.sbmlRole="species";
  dIDP.sbmlCompartment="uVol";
  GTP.sbmlRole="species";
  GTP.sbmlCompartment="uVol";
  dGTP.sbmlRole="species";
  dGTP.sbmlCompartment="uVol";
  dITP.sbmlRole="species";
  dITP.sbmlCompartment="uVol";
  Guanosine_space_3_space_space_5_space_minus_bis_space_diphosphate_space_.sbmlRole="species";
  Guanosine_space_3_space_space_5_space_minus_bis_space_diphosphate_space_.sbmlCompartment="uVol";
  RNA.sbmlRole="species";
  RNA.sbmlCompartment="uVol";
  DNA.sbmlRole="species";
  DNA.sbmlCompartment="uVol";
  ATP.sbmlRole="species";
  ATP.sbmlCompartment="uVol";
  dATP.sbmlRole="species";
  dATP.sbmlCompartment="uVol";
  ADP.sbmlRole="species";
  ADP.sbmlCompartment="uVol";
  dADP.sbmlRole="species";
  dADP.sbmlCompartment="uVol";
  dAMP.sbmlRole="species";
  dAMP.sbmlCompartment="uVol";
  D_minus_Ribose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribose_space_5_minus_phosphate.sbmlCompartment="uVol";
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlRole="species";
  space_5_minus_Phospho_minus_alpha_minus_D_minus_ribose_space_1_minus_diphosphate.sbmlCompartment="uVol";
  AMP.sbmlRole="species";
  AMP.sbmlCompartment="uVol";
  Adenosine.sbmlRole="species";
  Adenosine.sbmlCompartment="uVol";
  Adenine.sbmlRole="species";
  Adenine.sbmlCompartment="uVol";
  space_1_minus_space_5_space_minus_Phosphoribosyl_space_minus_5_minus_amino_minus_4_minus_imidazolecarboxamide.sbmlRole="species";
  space_1_minus_space_5_space_minus_Phosphoribosyl_space_minus_5_minus_amino_minus_4_minus_imidazolecarboxamide.sbmlCompartment="uVol";
  space_5_minus_Amino_minus_4_minus_imidazolecarboxyamide.sbmlRole="species";
  space_5_minus_Amino_minus_4_minus_imidazolecarboxyamide.sbmlCompartment="uVol";
  IDP.sbmlRole="species";
  IDP.sbmlCompartment="uVol";
  Xanthosine_space_5_space_minus_phosphate.sbmlRole="species";
  Xanthosine_space_5_space_minus_phosphate.sbmlCompartment="uVol";
  ITP.sbmlRole="species";
  ITP.sbmlCompartment="uVol";
  GMP.sbmlRole="species";
  GMP.sbmlCompartment="uVol";
  Guanine.sbmlRole="species";
  Guanine.sbmlCompartment="uVol";
  R01049.sbmlRole="rate";
  R01049.kf.sbmlRole="rate";
  R01049.kb.sbmlRole="rate";
  R00086.sbmlRole="rate";
  R00086.kf.sbmlRole="rate";
  R00086.kb.sbmlRole="rate";
  R00127.sbmlRole="rate";
  R00127.kf.sbmlRole="rate";
  R00127.kb.sbmlRole="rate";
  R00376.sbmlRole="rate";
  R00376.kf.sbmlRole="rate";
  R00376.kb.sbmlRole="rate";
  R00185.sbmlRole="rate";
  R00185.kf.sbmlRole="rate";
  R00185.kb.sbmlRole="rate";
  R01229.sbmlRole="rate";
  R01229.kf.sbmlRole="rate";
  R01229.kb.sbmlRole="rate";
  R01137.sbmlRole="rate";
  R01137.kf.sbmlRole="rate";
  R01137.kb.sbmlRole="rate";
  R00124.sbmlRole="rate";
  R00124.kf.sbmlRole="rate";
  R00124.kb.sbmlRole="rate";
  R03530.sbmlRole="rate";
  R03530.kf.sbmlRole="rate";
  R03530.kb.sbmlRole="rate";
  R00441.sbmlRole="rate";
  R00441.kf.sbmlRole="rate";
  R00441.kb.sbmlRole="rate";
  R01547.sbmlRole="rate";
  R01547.kf.sbmlRole="rate";
  R01547.kb.sbmlRole="rate";
  R00435.sbmlRole="rate";
  R00435.kf.sbmlRole="rate";
  R00435.kb.sbmlRole="rate";
  R00200.sbmlRole="rate";
  R00200.kf.sbmlRole="rate";
  R00200.kb.sbmlRole="rate";
  R01138.sbmlRole="rate";
  R01138.kf.sbmlRole="rate";
  R01138.kb.sbmlRole="rate";
  R01858.sbmlRole="rate";
  R01858.kf.sbmlRole="rate";
  R01858.kb.sbmlRole="rate";
  R00336.sbmlRole="rate";
  R00336.kf.sbmlRole="rate";
  R00336.kb.sbmlRole="rate";
  R00430.sbmlRole="rate";
  R00430.kf.sbmlRole="rate";
  R00430.kb.sbmlRole="rate";
  R00722.sbmlRole="rate";
  R00722.kf.sbmlRole="rate";
  R00722.kb.sbmlRole="rate";
  R01857.sbmlRole="rate";
  R01857.kf.sbmlRole="rate";
  R01857.kb.sbmlRole="rate";
  R00330.sbmlRole="rate";
  R00330.kf.sbmlRole="rate";
  R00330.kb.sbmlRole="rate";
  R00439.sbmlRole="rate";
  R00439.kf.sbmlRole="rate";
  R00439.kb.sbmlRole="rate";
  R04378.sbmlRole="rate";
  R04378.kf.sbmlRole="rate";
  R04378.kb.sbmlRole="rate";
  R00375.sbmlRole="rate";
  R00375.kf.sbmlRole="rate";
  R00375.kb.sbmlRole="rate";
  R00190.sbmlRole="rate";
  R00190.kf.sbmlRole="rate";
  R00190.kb.sbmlRole="rate";
  R00437.sbmlRole="rate";
  R00437.kf.sbmlRole="rate";
  R00437.kb.sbmlRole="rate";
  R01230.sbmlRole="rate";
  R01230.kf.sbmlRole="rate";
  R01230.kb.sbmlRole="rate";
}