// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01666: Deoxycytidine <=> dCMP 
// R00513: Cytidine <=> CMP 
// R00438: RNA => UDP 
// R00964: Uridine <=> UMP 
// R00571: UTP <=> CTP 
// R02093: dTDP => dTTP 
// R00156: UDP => UTP 
// R02099: Deoxyuridine <=> dUMP 
// R02331: dUDP => dUTP 
// R02485: Deoxycytidine <=> Deoxyuridine 
// R00158: UMP => UDP 
// R01567: Thymidine <=> dTMP 
// R00443: UTP => RNA 
// R01665: dCMP <=> dCDP 
// R00570: CDP => CTP 
// R02098: dUMP => dUDP 
// R01878: Cytidine <=> Uridine 
// R02094: dTMP => dTDP 
// R00442: CTP => RNA 
// R00378: dTTP => DNA 
// R00377: dCTP => DNA 
// R02326: dCDP => dCTP 
// R02016: Thioredoxin_space_disulfide <=> Thioredoxin 
// R00512: CMP => CDP 
// R00440: RNA => CDP 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_8_space_1_space_9 = 0 M;
  real E2_space_7_space_7_space_7 = 0 M;
  real E2_space_7_space_7_space_8 = 0 M;
  real E2_space_7_space_7_space_6 = 0 M;
  real E6_space_3_space_4_space_2 = 0 M;
  real E2_space_7_space_4_space_6 = 0 M;
  real E2_space_7_space_4_space_9 = 0 M;
  real E2_space_7_space_4_space_14 = 0 M;
  real E2_space_7_space_4_space_22 = 0 M;
  real E2_space_7_space_1_space_21 = 0 M;
  real E2_space_7_space_1_space_74 = 0 M;
  real E2_space_7_space_1_space_48 = 0 M;
  real E3_space_5_space_4_space_5 = 0 M;
  real Thioredoxin(time) M;
  real Thioredoxin_space_disulfide(time) M;
  real RNA(time) M;
  real DNA(time) M;
  real CTP(time) M;
  real dCTP(time) M;
  real dUTP(time) M;
  real dTTP(time) M;
  real UTP(time) M;
  real UDP(time) M;
  real CDP(time) M;
  real dUDP(time) M;
  real dTDP(time) M;
  real dCDP(time) M;
  real dUMP(time) M;
  real CMP(time) M;
  real dCMP(time) M;
  real dTMP(time) M;
  real UMP(time) M;
  real Deoxycytidine(time) M;
  real Deoxyuridine(time) M;
  real Thymidine(time) M;
  real Uridine(time) M;
  real Cytidine(time) M;
  real R01666(time) katal;
  extern real R01666.kf;
  extern real R01666.kb;
  real R00513(time) katal;
  extern real R00513.kf;
  extern real R00513.kb;
  real R00438(time) katal;
  extern real R00438.kf;
  extern real R00438.kb;
  real R00964(time) katal;
  extern real R00964.kf;
  extern real R00964.kb;
  real R00571(time) katal;
  extern real R00571.kf;
  extern real R00571.kb;
  real R02093(time) katal;
  extern real R02093.kf;
  extern real R02093.kb;
  real R00156(time) katal;
  extern real R00156.kf;
  extern real R00156.kb;
  real R02099(time) katal;
  extern real R02099.kf;
  extern real R02099.kb;
  real R02331(time) katal;
  extern real R02331.kf;
  extern real R02331.kb;
  real R02485(time) katal;
  extern real R02485.kf;
  extern real R02485.kb;
  real R00158(time) katal;
  extern real R00158.kf;
  extern real R00158.kb;
  real R01567(time) katal;
  extern real R01567.kf;
  extern real R01567.kb;
  real R00443(time) katal;
  extern real R00443.kf;
  extern real R00443.kb;
  real R01665(time) katal;
  extern real R01665.kf;
  extern real R01665.kb;
  real R00570(time) katal;
  extern real R00570.kf;
  extern real R00570.kb;
  real R02098(time) katal;
  extern real R02098.kf;
  extern real R02098.kb;
  real R01878(time) katal;
  extern real R01878.kf;
  extern real R01878.kb;
  real R02094(time) katal;
  extern real R02094.kf;
  extern real R02094.kb;
  real R00442(time) katal;
  extern real R00442.kf;
  extern real R00442.kb;
  real R00378(time) katal;
  extern real R00378.kf;
  extern real R00378.kb;
  real R00377(time) katal;
  extern real R00377.kf;
  extern real R00377.kb;
  real R02326(time) katal;
  extern real R02326.kf;
  extern real R02326.kb;
  real R02016(time) katal;
  extern real R02016.kf;
  extern real R02016.kb;
  real R00512(time) katal;
  extern real R00512.kf;
  extern real R00512.kb;
  real R00440(time) katal;
  extern real R00440.kf;
  extern real R00440.kb;

  // equations
  when (time=time.min) Thioredoxin = 0;
  Thioredoxin:time = (R02016)/uVol;
  when (time=time.min) Thioredoxin_space_disulfide = 0;
  Thioredoxin_space_disulfide:time = (-1*R02016)/uVol;
  when (time=time.min) RNA = 0;
  RNA:time = (-1*R00438 + R00443 + R00442 + -1*R00440)/uVol;
  when (time=time.min) DNA = 0;
  DNA:time = (R00378 + R00377)/uVol;
  when (time=time.min) CTP = 0;
  CTP:time = (R00571 + R00570 + -1*R00442)/uVol;
  when (time=time.min) dCTP = 0;
  dCTP:time = (-1*R00377 + R02326)/uVol;
  when (time=time.min) dUTP = 0;
  dUTP:time = (R02331)/uVol;
  when (time=time.min) dTTP = 0;
  dTTP:time = (R02093 + -1*R00378)/uVol;
  when (time=time.min) UTP = 0;
  UTP:time = (-1*R00571 + R00156 + -1*R00443)/uVol;
  when (time=time.min) UDP = 0;
  UDP:time = (R00438 + -1*R00156 + R00158)/uVol;
  when (time=time.min) CDP = 0;
  CDP:time = (-1*R00570 + R00512 + R00440)/uVol;
  when (time=time.min) dUDP = 0;
  dUDP:time = (-1*R02331 + R02098)/uVol;
  when (time=time.min) dTDP = 0;
  dTDP:time = (-1*R02093 + R02094)/uVol;
  when (time=time.min) dCDP = 0;
  dCDP:time = (R01665 + -1*R02326)/uVol;
  when (time=time.min) dUMP = 0;
  dUMP:time = (R02099 + -1*R02098)/uVol;
  when (time=time.min) CMP = 0;
  CMP:time = (R00513 + -1*R00512)/uVol;
  when (time=time.min) dCMP = 0;
  dCMP:time = (R01666 + -1*R01665)/uVol;
  when (time=time.min) dTMP = 0;
  dTMP:time = (R01567 + -1*R02094)/uVol;
  when (time=time.min) UMP = 0;
  UMP:time = (R00964 + -1*R00158)/uVol;
  when (time=time.min) Deoxycytidine = 0;
  Deoxycytidine:time = (-1*R01666 + -1*R02485)/uVol;
  when (time=time.min) Deoxyuridine = 0;
  Deoxyuridine:time = (-1*R02099 + R02485)/uVol;
  when (time=time.min) Thymidine = 0;
  Thymidine:time = (-1*R01567)/uVol;
  when (time=time.min) Uridine = 0;
  Uridine:time = (-1*R00964 + R01878)/uVol;
  when (time=time.min) Cytidine = 0;
  Cytidine:time = (-1*R00513 + -1*R01878)/uVol;
  R01666 = R01666.kf*Deoxycytidine - R01666.kb*dCMP;
  R00513 = R00513.kf*Cytidine - R00513.kb*CMP;
  R00438 = R00438.kf*RNA - R00438.kb*UDP;
  R00964 = R00964.kf*Uridine - R00964.kb*UMP;
  R00571 = R00571.kf*UTP - R00571.kb*CTP;
  R02093 = R02093.kf*dTDP - R02093.kb*dTTP;
  R00156 = R00156.kf*UDP - R00156.kb*UTP;
  R02099 = R02099.kf*Deoxyuridine - R02099.kb*dUMP;
  R02331 = R02331.kf*dUDP - R02331.kb*dUTP;
  R02485 = R02485.kf*Deoxycytidine - R02485.kb*Deoxyuridine;
  R00158 = R00158.kf*UMP - R00158.kb*UDP;
  R01567 = R01567.kf*Thymidine - R01567.kb*dTMP;
  R00443 = R00443.kf*UTP - R00443.kb*RNA;
  R01665 = R01665.kf*dCMP - R01665.kb*dCDP;
  R00570 = R00570.kf*CDP - R00570.kb*CTP;
  R02098 = R02098.kf*dUMP - R02098.kb*dUDP;
  R01878 = R01878.kf*Cytidine - R01878.kb*Uridine;
  R02094 = R02094.kf*dTMP - R02094.kb*dTDP;
  R00442 = R00442.kf*CTP - R00442.kb*RNA;
  R00378 = R00378.kf*dTTP - R00378.kb*DNA;
  R00377 = R00377.kf*dCTP - R00377.kb*DNA;
  R02326 = R02326.kf*dCDP - R02326.kb*dCTP;
  R02016 = R02016.kf*Thioredoxin_space_disulfide - R02016.kb*Thioredoxin;
  R00512 = R00512.kf*CMP - R00512.kb*CDP;
  R00440 = R00440.kf*RNA - R00440.kb*CDP;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_8_space_1_space_9.sbmlRole="species";
  E1_space_8_space_1_space_9.sbmlCompartment="uVol";
  E2_space_7_space_7_space_7.sbmlRole="species";
  E2_space_7_space_7_space_7.sbmlCompartment="uVol";
  E2_space_7_space_7_space_8.sbmlRole="species";
  E2_space_7_space_7_space_8.sbmlCompartment="uVol";
  E2_space_7_space_7_space_6.sbmlRole="species";
  E2_space_7_space_7_space_6.sbmlCompartment="uVol";
  E6_space_3_space_4_space_2.sbmlRole="species";
  E6_space_3_space_4_space_2.sbmlCompartment="uVol";
  E2_space_7_space_4_space_6.sbmlRole="species";
  E2_space_7_space_4_space_6.sbmlCompartment="uVol";
  E2_space_7_space_4_space_9.sbmlRole="species";
  E2_space_7_space_4_space_9.sbmlCompartment="uVol";
  E2_space_7_space_4_space_14.sbmlRole="species";
  E2_space_7_space_4_space_14.sbmlCompartment="uVol";
  E2_space_7_space_4_space_22.sbmlRole="species";
  E2_space_7_space_4_space_22.sbmlCompartment="uVol";
  E2_space_7_space_1_space_21.sbmlRole="species";
  E2_space_7_space_1_space_21.sbmlCompartment="uVol";
  E2_space_7_space_1_space_74.sbmlRole="species";
  E2_space_7_space_1_space_74.sbmlCompartment="uVol";
  E2_space_7_space_1_space_48.sbmlRole="species";
  E2_space_7_space_1_space_48.sbmlCompartment="uVol";
  E3_space_5_space_4_space_5.sbmlRole="species";
  E3_space_5_space_4_space_5.sbmlCompartment="uVol";
  Thioredoxin.sbmlRole="species";
  Thioredoxin.sbmlCompartment="uVol";
  Thioredoxin_space_disulfide.sbmlRole="species";
  Thioredoxin_space_disulfide.sbmlCompartment="uVol";
  RNA.sbmlRole="species";
  RNA.sbmlCompartment="uVol";
  DNA.sbmlRole="species";
  DNA.sbmlCompartment="uVol";
  CTP.sbmlRole="species";
  CTP.sbmlCompartment="uVol";
  dCTP.sbmlRole="species";
  dCTP.sbmlCompartment="uVol";
  dUTP.sbmlRole="species";
  dUTP.sbmlCompartment="uVol";
  dTTP.sbmlRole="species";
  dTTP.sbmlCompartment="uVol";
  UTP.sbmlRole="species";
  UTP.sbmlCompartment="uVol";
  UDP.sbmlRole="species";
  UDP.sbmlCompartment="uVol";
  CDP.sbmlRole="species";
  CDP.sbmlCompartment="uVol";
  dUDP.sbmlRole="species";
  dUDP.sbmlCompartment="uVol";
  dTDP.sbmlRole="species";
  dTDP.sbmlCompartment="uVol";
  dCDP.sbmlRole="species";
  dCDP.sbmlCompartment="uVol";
  dUMP.sbmlRole="species";
  dUMP.sbmlCompartment="uVol";
  CMP.sbmlRole="species";
  CMP.sbmlCompartment="uVol";
  dCMP.sbmlRole="species";
  dCMP.sbmlCompartment="uVol";
  dTMP.sbmlRole="species";
  dTMP.sbmlCompartment="uVol";
  UMP.sbmlRole="species";
  UMP.sbmlCompartment="uVol";
  Deoxycytidine.sbmlRole="species";
  Deoxycytidine.sbmlCompartment="uVol";
  Deoxyuridine.sbmlRole="species";
  Deoxyuridine.sbmlCompartment="uVol";
  Thymidine.sbmlRole="species";
  Thymidine.sbmlCompartment="uVol";
  Uridine.sbmlRole="species";
  Uridine.sbmlCompartment="uVol";
  Cytidine.sbmlRole="species";
  Cytidine.sbmlCompartment="uVol";
  R01666.sbmlRole="rate";
  R01666.kf.sbmlRole="rate";
  R01666.kb.sbmlRole="rate";
  R00513.sbmlRole="rate";
  R00513.kf.sbmlRole="rate";
  R00513.kb.sbmlRole="rate";
  R00438.sbmlRole="rate";
  R00438.kf.sbmlRole="rate";
  R00438.kb.sbmlRole="rate";
  R00964.sbmlRole="rate";
  R00964.kf.sbmlRole="rate";
  R00964.kb.sbmlRole="rate";
  R00571.sbmlRole="rate";
  R00571.kf.sbmlRole="rate";
  R00571.kb.sbmlRole="rate";
  R02093.sbmlRole="rate";
  R02093.kf.sbmlRole="rate";
  R02093.kb.sbmlRole="rate";
  R00156.sbmlRole="rate";
  R00156.kf.sbmlRole="rate";
  R00156.kb.sbmlRole="rate";
  R02099.sbmlRole="rate";
  R02099.kf.sbmlRole="rate";
  R02099.kb.sbmlRole="rate";
  R02331.sbmlRole="rate";
  R02331.kf.sbmlRole="rate";
  R02331.kb.sbmlRole="rate";
  R02485.sbmlRole="rate";
  R02485.kf.sbmlRole="rate";
  R02485.kb.sbmlRole="rate";
  R00158.sbmlRole="rate";
  R00158.kf.sbmlRole="rate";
  R00158.kb.sbmlRole="rate";
  R01567.sbmlRole="rate";
  R01567.kf.sbmlRole="rate";
  R01567.kb.sbmlRole="rate";
  R00443.sbmlRole="rate";
  R00443.kf.sbmlRole="rate";
  R00443.kb.sbmlRole="rate";
  R01665.sbmlRole="rate";
  R01665.kf.sbmlRole="rate";
  R01665.kb.sbmlRole="rate";
  R00570.sbmlRole="rate";
  R00570.kf.sbmlRole="rate";
  R00570.kb.sbmlRole="rate";
  R02098.sbmlRole="rate";
  R02098.kf.sbmlRole="rate";
  R02098.kb.sbmlRole="rate";
  R01878.sbmlRole="rate";
  R01878.kf.sbmlRole="rate";
  R01878.kb.sbmlRole="rate";
  R02094.sbmlRole="rate";
  R02094.kf.sbmlRole="rate";
  R02094.kb.sbmlRole="rate";
  R00442.sbmlRole="rate";
  R00442.kf.sbmlRole="rate";
  R00442.kb.sbmlRole="rate";
  R00378.sbmlRole="rate";
  R00378.kf.sbmlRole="rate";
  R00378.kb.sbmlRole="rate";
  R00377.sbmlRole="rate";
  R00377.kf.sbmlRole="rate";
  R00377.kb.sbmlRole="rate";
  R02326.sbmlRole="rate";
  R02326.kf.sbmlRole="rate";
  R02326.kb.sbmlRole="rate";
  R02016.sbmlRole="rate";
  R02016.kf.sbmlRole="rate";
  R02016.kb.sbmlRole="rate";
  R00512.sbmlRole="rate";
  R00512.kf.sbmlRole="rate";
  R00512.kb.sbmlRole="rate";
  R00440.sbmlRole="rate";
  R00440.kf.sbmlRole="rate";
  R00440.kb.sbmlRole="rate";
}