// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01231: L_minus_Glutamine <=> GMP 
// R00257: L_minus_Glutamine <=> NAD_plus_ 
// R05578: L_minus_Glutamate <=> L_minus_Glutamyl_minus_tRNA_space_Glu_space_ 
// R03905: L_minus_Glutamyl_minus_tRNA_space_Gln_space_ <=> Glutaminyl_minus_tRNA 
// R00260: L_minus_Glutamate => D_minus_Glutamate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E5_space_1_space_1_space_3 = 0 M;
  real E6_space_1_space_1_space_17 = 0 M;
  real E6_space_3_space_5_space_1 = 0 M;
  real E6_space_3_space_5_space_2 = 0 M;
  real E6_space_3_space_5_space_7 = 0 M;
  real L_minus_Glutamyl_minus_tRNA_space_Glu_space_(time) M;
  real D_minus_Glutamate(time) M;
  real L_minus_Glutamine(time) M;
  real L_minus_Glutamate(time) M;
  real NAD_plus_(time) M;
  real GMP(time) M;
  real Glutaminyl_minus_tRNA(time) M;
  real L_minus_Glutamyl_minus_tRNA_space_Gln_space_(time) M;
  real R01231(time) katal;
  extern real R01231.kf;
  extern real R01231.kb;
  real R00257(time) katal;
  extern real R00257.kf;
  extern real R00257.kb;
  real R05578(time) katal;
  extern real R05578.kf;
  extern real R05578.kb;
  real R03905(time) katal;
  extern real R03905.kf;
  extern real R03905.kb;
  real R00260(time) katal;
  extern real R00260.kf;
  extern real R00260.kb;

  // equations
  when (time=time.min) L_minus_Glutamyl_minus_tRNA_space_Glu_space_ = 0;
  L_minus_Glutamyl_minus_tRNA_space_Glu_space_:time = (R05578)/uVol;
  when (time=time.min) D_minus_Glutamate = 0;
  D_minus_Glutamate:time = (R00260)/uVol;
  when (time=time.min) L_minus_Glutamine = 0;
  L_minus_Glutamine:time = (-1*R01231 + -1*R00257)/uVol;
  when (time=time.min) L_minus_Glutamate = 0;
  L_minus_Glutamate:time = (-1*R05578 + -1*R00260)/uVol;
  when (time=time.min) NAD_plus_ = 0;
  NAD_plus_:time = (R00257)/uVol;
  when (time=time.min) GMP = 0;
  GMP:time = (R01231)/uVol;
  when (time=time.min) Glutaminyl_minus_tRNA = 0;
  Glutaminyl_minus_tRNA:time = (R03905)/uVol;
  when (time=time.min) L_minus_Glutamyl_minus_tRNA_space_Gln_space_ = 0;
  L_minus_Glutamyl_minus_tRNA_space_Gln_space_:time = (-1*R03905)/uVol;
  R01231 = R01231.kf*L_minus_Glutamine - R01231.kb*GMP;
  R00257 = R00257.kf*L_minus_Glutamine - R00257.kb*NAD_plus_;
  R05578 = R05578.kf*L_minus_Glutamate - R05578.kb*L_minus_Glutamyl_minus_tRNA_space_Glu_space_;
  R03905 = R03905.kf*L_minus_Glutamyl_minus_tRNA_space_Gln_space_ - R03905.kb*Glutaminyl_minus_tRNA;
  R00260 = R00260.kf*L_minus_Glutamate - R00260.kb*D_minus_Glutamate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E5_space_1_space_1_space_3.sbmlRole="species";
  E5_space_1_space_1_space_3.sbmlCompartment="uVol";
  E6_space_1_space_1_space_17.sbmlRole="species";
  E6_space_1_space_1_space_17.sbmlCompartment="uVol";
  E6_space_3_space_5_space_1.sbmlRole="species";
  E6_space_3_space_5_space_1.sbmlCompartment="uVol";
  E6_space_3_space_5_space_2.sbmlRole="species";
  E6_space_3_space_5_space_2.sbmlCompartment="uVol";
  E6_space_3_space_5_space_7.sbmlRole="species";
  E6_space_3_space_5_space_7.sbmlCompartment="uVol";
  L_minus_Glutamyl_minus_tRNA_space_Glu_space_.sbmlRole="species";
  L_minus_Glutamyl_minus_tRNA_space_Glu_space_.sbmlCompartment="uVol";
  D_minus_Glutamate.sbmlRole="species";
  D_minus_Glutamate.sbmlCompartment="uVol";
  L_minus_Glutamine.sbmlRole="species";
  L_minus_Glutamine.sbmlCompartment="uVol";
  L_minus_Glutamate.sbmlRole="species";
  L_minus_Glutamate.sbmlCompartment="uVol";
  NAD_plus_.sbmlRole="species";
  NAD_plus_.sbmlCompartment="uVol";
  GMP.sbmlRole="species";
  GMP.sbmlCompartment="uVol";
  Glutaminyl_minus_tRNA.sbmlRole="species";
  Glutaminyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Glutamyl_minus_tRNA_space_Gln_space_.sbmlRole="species";
  L_minus_Glutamyl_minus_tRNA_space_Gln_space_.sbmlCompartment="uVol";
  R01231.sbmlRole="rate";
  R01231.kf.sbmlRole="rate";
  R01231.kb.sbmlRole="rate";
  R00257.sbmlRole="rate";
  R00257.kf.sbmlRole="rate";
  R00257.kb.sbmlRole="rate";
  R05578.sbmlRole="rate";
  R05578.kf.sbmlRole="rate";
  R05578.kb.sbmlRole="rate";
  R03905.sbmlRole="rate";
  R03905.kf.sbmlRole="rate";
  R03905.kb.sbmlRole="rate";
  R00260.sbmlRole="rate";
  R00260.kf.sbmlRole="rate";
  R00260.kb.sbmlRole="rate";
}