// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04617: UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ <=> UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_ 
// R02788: meso_minus_2_space_6_minus_Diaminoheptanedioate <=> UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ 
// R03658: L_minus_Lysine <=> L_minus_Lysyl_minus_tRNA 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E6_space_3_space_2_space_10 = 0 M;
  real E6_space_3_space_2_space_13 = 0 M;
  real E6_space_1_space_1_space_6 = 0 M;
  real UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_(time) M;
  real UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_(time) M;
  real meso_minus_2_space_6_minus_Diaminoheptanedioate(time) M;
  real L_minus_Lysine(time) M;
  real L_minus_Lysyl_minus_tRNA(time) M;
  real R04617(time) katal;
  extern real R04617.kf;
  extern real R04617.kb;
  real R02788(time) katal;
  extern real R02788.kf;
  extern real R02788.kb;
  real R03658(time) katal;
  extern real R03658.kf;
  extern real R03658.kb;

  // equations
  when (time=time.min) UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_ = 0;
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_:time = (R04617)/uVol;
  when (time=time.min) UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ = 0;
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_:time = (-1*R04617 + R02788)/uVol;
  when (time=time.min) meso_minus_2_space_6_minus_Diaminoheptanedioate = 0;
  meso_minus_2_space_6_minus_Diaminoheptanedioate:time = (-1*R02788)/uVol;
  when (time=time.min) L_minus_Lysine = 0;
  L_minus_Lysine:time = (-1*R03658)/uVol;
  when (time=time.min) L_minus_Lysyl_minus_tRNA = 0;
  L_minus_Lysyl_minus_tRNA:time = (R03658)/uVol;
  R04617 = R04617.kf*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_ - R04617.kb*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_;
  R02788 = R02788.kf*meso_minus_2_space_6_minus_Diaminoheptanedioate - R02788.kb*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_;
  R03658 = R03658.kf*L_minus_Lysine - R03658.kb*L_minus_Lysyl_minus_tRNA;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E6_space_3_space_2_space_10.sbmlRole="species";
  E6_space_3_space_2_space_10.sbmlCompartment="uVol";
  E6_space_3_space_2_space_13.sbmlRole="species";
  E6_space_3_space_2_space_13.sbmlCompartment="uVol";
  E6_space_1_space_1_space_6.sbmlRole="species";
  E6_space_1_space_1_space_6.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_.sbmlRole="species";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_.sbmlRole="species";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_gamma_minus_glutamyl_minus_meso_minus_2_space_6_minus_.sbmlCompartment="uVol";
  meso_minus_2_space_6_minus_Diaminoheptanedioate.sbmlRole="species";
  meso_minus_2_space_6_minus_Diaminoheptanedioate.sbmlCompartment="uVol";
  L_minus_Lysine.sbmlRole="species";
  L_minus_Lysine.sbmlCompartment="uVol";
  L_minus_Lysyl_minus_tRNA.sbmlRole="species";
  L_minus_Lysyl_minus_tRNA.sbmlCompartment="uVol";
  R04617.sbmlRole="rate";
  R04617.kf.sbmlRole="rate";
  R04617.kb.sbmlRole="rate";
  R02788.sbmlRole="rate";
  R02788.kf.sbmlRole="rate";
  R02788.kb.sbmlRole="rate";
  R03658.sbmlRole="rate";
  R03658.kf.sbmlRole="rate";
  R03658.kb.sbmlRole="rate";
}