// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00552: L_minus_Arginine <=> L_minus_Citrulline 
// R03646: L_minus_Arginine => L_minus_Arginyl_minus_tRNA_space_Arg_space_ 
// R03661: L_minus_Proline <=> L_minus_Prolyl_minus_tRNA_space_Pro_space_ 
// R01398: Carbamoyl_space_phosphate L_minus_Ornithine => L_minus_Citrulline 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_1_space_3_space_3 = 0 M;
  real E6_space_1_space_1_space_15 = 0 M;
  real E3_space_5_space_3_space_6 = 0 M;
  real E6_space_1_space_1_space_19 = 0 M;
  real Carbamoyl_space_phosphate(time) M;
  real L_minus_Prolyl_minus_tRNA_space_Pro_space_(time) M;
  real L_minus_Citrulline(time) M;
  real L_minus_Ornithine(time) M;
  real L_minus_Proline(time) M;
  real L_minus_Arginine(time) M;
  real L_minus_Arginyl_minus_tRNA_space_Arg_space_(time) M;
  real R00552(time) katal;
  extern real R00552.kf;
  extern real R00552.kb;
  real R03646(time) katal;
  extern real R03646.kf;
  extern real R03646.kb;
  real R03661(time) katal;
  extern real R03661.kf;
  extern real R03661.kb;
  real R01398(time) katal;
  extern real R01398.kf;
  extern real R01398.kb;

  // equations
  when (time=time.min) Carbamoyl_space_phosphate = 0;
  Carbamoyl_space_phosphate:time = (-1*R01398)/uVol;
  when (time=time.min) L_minus_Prolyl_minus_tRNA_space_Pro_space_ = 0;
  L_minus_Prolyl_minus_tRNA_space_Pro_space_:time = (R03661)/uVol;
  when (time=time.min) L_minus_Citrulline = 0;
  L_minus_Citrulline:time = (R00552 + R01398)/uVol;
  when (time=time.min) L_minus_Ornithine = 0;
  L_minus_Ornithine:time = (-1*R01398)/uVol;
  when (time=time.min) L_minus_Proline = 0;
  L_minus_Proline:time = (-1*R03661)/uVol;
  when (time=time.min) L_minus_Arginine = 0;
  L_minus_Arginine:time = (-1*R00552 + -1*R03646)/uVol;
  when (time=time.min) L_minus_Arginyl_minus_tRNA_space_Arg_space_ = 0;
  L_minus_Arginyl_minus_tRNA_space_Arg_space_:time = (R03646)/uVol;
  R00552 = R00552.kf*L_minus_Arginine - R00552.kb*L_minus_Citrulline;
  R03646 = R03646.kf*L_minus_Arginine - R03646.kb*L_minus_Arginyl_minus_tRNA_space_Arg_space_;
  R03661 = R03661.kf*L_minus_Proline - R03661.kb*L_minus_Prolyl_minus_tRNA_space_Pro_space_;
  R01398 = R01398.kf*Carbamoyl_space_phosphate*L_minus_Ornithine - R01398.kb*L_minus_Citrulline;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_1_space_3_space_3.sbmlRole="species";
  E2_space_1_space_3_space_3.sbmlCompartment="uVol";
  E6_space_1_space_1_space_15.sbmlRole="species";
  E6_space_1_space_1_space_15.sbmlCompartment="uVol";
  E3_space_5_space_3_space_6.sbmlRole="species";
  E3_space_5_space_3_space_6.sbmlCompartment="uVol";
  E6_space_1_space_1_space_19.sbmlRole="species";
  E6_space_1_space_1_space_19.sbmlCompartment="uVol";
  Carbamoyl_space_phosphate.sbmlRole="species";
  Carbamoyl_space_phosphate.sbmlCompartment="uVol";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlRole="species";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlCompartment="uVol";
  L_minus_Citrulline.sbmlRole="species";
  L_minus_Citrulline.sbmlCompartment="uVol";
  L_minus_Ornithine.sbmlRole="species";
  L_minus_Ornithine.sbmlCompartment="uVol";
  L_minus_Proline.sbmlRole="species";
  L_minus_Proline.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlRole="species";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlCompartment="uVol";
  R00552.sbmlRole="rate";
  R00552.kf.sbmlRole="rate";
  R00552.kb.sbmlRole="rate";
  R03646.sbmlRole="rate";
  R03646.kf.sbmlRole="rate";
  R03646.kb.sbmlRole="rate";
  R03661.sbmlRole="rate";
  R03661.kf.sbmlRole="rate";
  R03661.kb.sbmlRole="rate";
  R01398.sbmlRole="rate";
  R01398.kf.sbmlRole="rate";
  R01398.kb.sbmlRole="rate";
}