// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01542: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate => space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate 
// R00289: D_minus_Glucose_space_1_minus_phosphate <=> UDP_minus_glucose 
// R05338: D_minus_Ribulose_space_5_minus_phosphate => D_minus_arabino_minus_3_minus_Hexulose_space_6_minus_phosphate 
// R01983: D_minus_Galacturonate <=> D_minus_Tagaturonate 
// R01529: D_minus_Ribulose_space_5_minus_phosphate => D_minus_Xylulose_space_5_minus_phosphate 
// R01482: D_minus_Glucuronate => D_minus_Fructuronate 
// R02439: L_minus_Ribulose => L_minus_Ribulose_space_5_minus_phosphate 
// R01432: D_minus_Xylose => D_minus_Xylulose 
// R01902: L_minus_Xylulose => L_minus_Xylulose_space_1_minus_phosphate 
// R01526: D_minus_Ribulose => D_minus_Ribulose_space_5_minus_phosphate 
// R05606: D_minus_Mannonate => space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate 
// R05605: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate => space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal 
// R00286: UDP_minus_glucose => UDP_minus_glucuronate 
// R01761: L_minus_Arabinose => L_minus_Ribulose 
// R04383: space_5_minus_Dehydro_minus_4_minus_deoxy_minus_D_minus_glucuronate => space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate 
// R02555: D_minus_Tagaturonate <=> D_minus_Altronate 
// R01906: L_minus_Xylulose => L_minus_Lyxose 
// R01639: D_minus_Xylulose => D_minus_Xylulose_space_5_minus_phosphate 
// R05850: L_minus_Ribulose_space_5_minus_phosphate <=> D_minus_Xylulose_space_5_minus_phosphate 
// R01541: space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate => space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate 
// R02361: Pectate <=> space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate 
// R01540: D_minus_Altronate <=> space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_1_space_45 = 0 M;
  real E4_space_1_space_2_space_14 = 0 M;
  real E4_space_2_space_1_space_7 = 0 M;
  real E5_space_3_space_1_space_17 = 0 M;
  real E1_space_1_space_1_space_58 = 0 M;
  real E4_space_2_space_1_space_8 = 0 M;
  real E5_space_3_space_1_space_5 = 0 M;
  real E1_space_1_space_1_space_22 = 0 M;
  real E2_space_7_space_7_space_9 = 0 M;
  real E5_space_3_space_1_space_12 = 0 M;
  real E4_space_2_space_2_space_2 = 0 M;
  real E2_space_7_space_1_space_17 = 0 M;
  real E5_space_1_space_3_space_1 = 0 M;
  real E4_space_1_space_2_space_minus_ = 0 M;
  real E2_space_7_space_1_space_16 = 0 M;
  real E5_space_3_space_1_space_minus_ = 0 M;
  real E5_space_1_space_3_space_4 = 0 M;
  real E2_space_7_space_1_space_5 = 0 M;
  real E5_space_3_space_1_space_4 = 0 M;
  real E1_space_1_space_1_space_125 = 0 M;
  real D_minus_Altronate(time) M;
  real space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate(time) M;
  real space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate(time) M;
  real space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal(time) M;
  real space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate(time) M;
  real space_5_minus_Dehydro_minus_4_minus_deoxy_minus_D_minus_glucuronate(time) M;
  real D_minus_Tagaturonate(time) M;
  real D_minus_Mannonate(time) M;
  real D_minus_Xylose(time) M;
  real UDP_minus_glucose(time) M;
  real D_minus_Glucose_space_1_minus_phosphate(time) M;
  real UDP_minus_glucuronate(time) M;
  real D_minus_Xylulose(time) M;
  real Pectate(time) M;
  real D_minus_Galacturonate(time) M;
  real D_minus_Fructuronate(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_arabino_minus_3_minus_Hexulose_space_6_minus_phosphate(time) M;
  real D_minus_Glucuronate(time) M;
  real L_minus_Xylulose_space_1_minus_phosphate(time) M;
  real L_minus_Lyxose(time) M;
  real L_minus_Xylulose(time) M;
  real L_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose(time) M;
  real space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate(time) M;
  real L_minus_Arabinose(time) M;
  real L_minus_Ribulose(time) M;
  real R01542(time) katal;
  extern real R01542.kf;
  extern real R01542.kb;
  real R00289(time) katal;
  extern real R00289.kf;
  extern real R00289.kb;
  real R05338(time) katal;
  extern real R05338.kf;
  extern real R05338.kb;
  real R01983(time) katal;
  extern real R01983.kf;
  extern real R01983.kb;
  real R01529(time) katal;
  extern real R01529.kf;
  extern real R01529.kb;
  real R01482(time) katal;
  extern real R01482.kf;
  extern real R01482.kb;
  real R02439(time) katal;
  extern real R02439.kf;
  extern real R02439.kb;
  real R01432(time) katal;
  extern real R01432.kf;
  extern real R01432.kb;
  real R01902(time) katal;
  extern real R01902.kf;
  extern real R01902.kb;
  real R01526(time) katal;
  extern real R01526.kf;
  extern real R01526.kb;
  real R05606(time) katal;
  extern real R05606.kf;
  extern real R05606.kb;
  real R05605(time) katal;
  extern real R05605.kf;
  extern real R05605.kb;
  real R00286(time) katal;
  extern real R00286.kf;
  extern real R00286.kb;
  real R01761(time) katal;
  extern real R01761.kf;
  extern real R01761.kb;
  real R04383(time) katal;
  extern real R04383.kf;
  extern real R04383.kb;
  real R02555(time) katal;
  extern real R02555.kf;
  extern real R02555.kb;
  real R01906(time) katal;
  extern real R01906.kf;
  extern real R01906.kb;
  real R01639(time) katal;
  extern real R01639.kf;
  extern real R01639.kb;
  real R05850(time) katal;
  extern real R05850.kf;
  extern real R05850.kb;
  real R01541(time) katal;
  extern real R01541.kf;
  extern real R01541.kb;
  real R02361(time) katal;
  extern real R02361.kf;
  extern real R02361.kb;
  real R01540(time) katal;
  extern real R01540.kf;
  extern real R01540.kb;

  // equations
  when (time=time.min) D_minus_Altronate = 0;
  D_minus_Altronate:time = (R02555 + -1*R01540)/uVol;
  when (time=time.min) space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate = 0;
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate:time = (-1*R01542 + R05606 + -1*R01541 + R01540)/uVol;
  when (time=time.min) space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate = 0;
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate:time = (-1*R05605 + R01541)/uVol;
  when (time=time.min) space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal = 0;
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal:time = (R05605)/uVol;
  when (time=time.min) space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate = 0;
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate:time = (R02361)/uVol;
  when (time=time.min) space_5_minus_Dehydro_minus_4_minus_deoxy_minus_D_minus_glucuronate = 0;
  space_5_minus_Dehydro_minus_4_minus_deoxy_minus_D_minus_glucuronate:time = (-1*R04383)/uVol;
  when (time=time.min) D_minus_Tagaturonate = 0;
  D_minus_Tagaturonate:time = (R01983 + -1*R02555)/uVol;
  when (time=time.min) D_minus_Mannonate = 0;
  D_minus_Mannonate:time = (-1*R05606)/uVol;
  when (time=time.min) D_minus_Xylose = 0;
  D_minus_Xylose:time = (-1*R01432)/uVol;
  when (time=time.min) UDP_minus_glucose = 0;
  UDP_minus_glucose:time = (R00289 + -1*R00286)/uVol;
  when (time=time.min) D_minus_Glucose_space_1_minus_phosphate = 0;
  D_minus_Glucose_space_1_minus_phosphate:time = (-1*R00289)/uVol;
  when (time=time.min) UDP_minus_glucuronate = 0;
  UDP_minus_glucuronate:time = (R00286)/uVol;
  when (time=time.min) D_minus_Xylulose = 0;
  D_minus_Xylulose:time = (R01432 + -1*R01639)/uVol;
  when (time=time.min) Pectate = 0;
  Pectate:time = (-1*R02361)/uVol;
  when (time=time.min) D_minus_Galacturonate = 0;
  D_minus_Galacturonate:time = (-1*R01983)/uVol;
  when (time=time.min) D_minus_Fructuronate = 0;
  D_minus_Fructuronate:time = (R01482)/uVol;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  D_minus_Xylulose_space_5_minus_phosphate:time = (R01529 + R01639 + R05850)/uVol;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  D_minus_Ribulose_space_5_minus_phosphate:time = (-1*R05338 + -1*R01529 + R01526)/uVol;
  when (time=time.min) D_minus_arabino_minus_3_minus_Hexulose_space_6_minus_phosphate = 0;
  D_minus_arabino_minus_3_minus_Hexulose_space_6_minus_phosphate:time = (R05338)/uVol;
  when (time=time.min) D_minus_Glucuronate = 0;
  D_minus_Glucuronate:time = (-1*R01482)/uVol;
  when (time=time.min) L_minus_Xylulose_space_1_minus_phosphate = 0;
  L_minus_Xylulose_space_1_minus_phosphate:time = (R01902)/uVol;
  when (time=time.min) L_minus_Lyxose = 0;
  L_minus_Lyxose:time = (R01906)/uVol;
  when (time=time.min) L_minus_Xylulose = 0;
  L_minus_Xylulose:time = (-1*R01902 + -1*R01906)/uVol;
  when (time=time.min) L_minus_Ribulose_space_5_minus_phosphate = 0;
  L_minus_Ribulose_space_5_minus_phosphate:time = (R02439 + -1*R05850)/uVol;
  when (time=time.min) D_minus_Ribulose = 0;
  D_minus_Ribulose:time = (-1*R01526)/uVol;
  when (time=time.min) space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate = 0;
  space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate:time = (R01542 + R04383)/uVol;
  when (time=time.min) L_minus_Arabinose = 0;
  L_minus_Arabinose:time = (-1*R01761)/uVol;
  when (time=time.min) L_minus_Ribulose = 0;
  L_minus_Ribulose:time = (-1*R02439 + R01761)/uVol;
  R01542 = R01542.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate - R01542.kb*space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate;
  R00289 = R00289.kf*D_minus_Glucose_space_1_minus_phosphate - R00289.kb*UDP_minus_glucose;
  R05338 = R05338.kf*D_minus_Ribulose_space_5_minus_phosphate - R05338.kb*D_minus_arabino_minus_3_minus_Hexulose_space_6_minus_phosphate;
  R01983 = R01983.kf*D_minus_Galacturonate - R01983.kb*D_minus_Tagaturonate;
  R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R01482 = R01482.kf*D_minus_Glucuronate - R01482.kb*D_minus_Fructuronate;
  R02439 = R02439.kf*L_minus_Ribulose - R02439.kb*L_minus_Ribulose_space_5_minus_phosphate;
  R01432 = R01432.kf*D_minus_Xylose - R01432.kb*D_minus_Xylulose;
  R01902 = R01902.kf*L_minus_Xylulose - R01902.kb*L_minus_Xylulose_space_1_minus_phosphate;
  R01526 = R01526.kf*D_minus_Ribulose - R01526.kb*D_minus_Ribulose_space_5_minus_phosphate;
  R05606 = R05606.kf*D_minus_Mannonate - R05606.kb*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate;
  R05605 = R05605.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate - R05605.kb*space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal;
  R00286 = R00286.kf*UDP_minus_glucose - R00286.kb*UDP_minus_glucuronate;
  R01761 = R01761.kf*L_minus_Arabinose - R01761.kb*L_minus_Ribulose;
  R04383 = R04383.kf*space_5_minus_Dehydro_minus_4_minus_deoxy_minus_D_minus_glucuronate - R04383.kb*space_4S_space_minus_4_space_6_minus_Dihydroxy_minus_2_space_5_minus_dioxohexanoate;
  R02555 = R02555.kf*D_minus_Tagaturonate - R02555.kb*D_minus_Altronate;
  R01906 = R01906.kf*L_minus_Xylulose - R01906.kb*L_minus_Lyxose;
  R01639 = R01639.kf*D_minus_Xylulose - R01639.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R05850 = R05850.kf*L_minus_Ribulose_space_5_minus_phosphate - R05850.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R01541 = R01541.kf*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate - R01541.kb*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate;
  R02361 = R02361.kf*Pectate - R02361.kb*space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate;
  R01540 = R01540.kf*D_minus_Altronate - R01540.kb*space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_1_space_45.sbmlRole="species";
  E2_space_7_space_1_space_45.sbmlCompartment="uVol";
  E4_space_1_space_2_space_14.sbmlRole="species";
  E4_space_1_space_2_space_14.sbmlCompartment="uVol";
  E4_space_2_space_1_space_7.sbmlRole="species";
  E4_space_2_space_1_space_7.sbmlCompartment="uVol";
  E5_space_3_space_1_space_17.sbmlRole="species";
  E5_space_3_space_1_space_17.sbmlCompartment="uVol";
  E1_space_1_space_1_space_58.sbmlRole="species";
  E1_space_1_space_1_space_58.sbmlCompartment="uVol";
  E4_space_2_space_1_space_8.sbmlRole="species";
  E4_space_2_space_1_space_8.sbmlCompartment="uVol";
  E5_space_3_space_1_space_5.sbmlRole="species";
  E5_space_3_space_1_space_5.sbmlCompartment="uVol";
  E1_space_1_space_1_space_22.sbmlRole="species";
  E1_space_1_space_1_space_22.sbmlCompartment="uVol";
  E2_space_7_space_7_space_9.sbmlRole="species";
  E2_space_7_space_7_space_9.sbmlCompartment="uVol";
  E5_space_3_space_1_space_12.sbmlRole="species";
  E5_space_3_space_1_space_12.sbmlCompartment="uVol";
  E4_space_2_space_2_space_2.sbmlRole="species";
  E4_space_2_space_2_space_2.sbmlCompartment="uVol";
  E2_space_7_space_1_space_17.sbmlRole="species";
  E2_space_7_space_1_space_17.sbmlCompartment="uVol";
  E5_space_1_space_3_space_1.sbmlRole="species";
  E5_space_1_space_3_space_1.sbmlCompartment="uVol";
  E4_space_1_space_2_space_minus_.sbmlRole="species";
  E4_space_1_space_2_space_minus_.sbmlCompartment="uVol";
  E2_space_7_space_1_space_16.sbmlRole="species";
  E2_space_7_space_1_space_16.sbmlCompartment="uVol";
  E5_space_3_space_1_space_minus_.sbmlRole="species";
  E5_space_3_space_1_space_minus_.sbmlCompartment="uVol";
  E5_space_1_space_3_space_4.sbmlRole="species";
  E5_space_1_space_3_space_4.sbmlCompartment="uVol";
  E2_space_7_space_1_space_5.sbmlRole="species";
  E2_space_7_space_1_space_5.sbmlCompartment="uVol";
  E5_space_3_space_1_space_4.sbmlRole="species";
  E5_space_3_space_1_space_4.sbmlCompartment="uVol";
  E1_space_1_space_1_space_125.sbmlRole="species";
  E1_space_1_space_1_space_125.sbmlCompartment="uVol";
  D_minus_Altronate.sbmlRole="species";
  D_minus_Altronate.sbmlCompartment="uVol";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate.sbmlRole="species";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate.sbmlCompartment="uVol";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlRole="species";
  space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlCompartment="uVol";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlRole="species";
  space_2R_space_minus_2_minus_Hydroxy_minus_3_minus_space_phosphonooxy_space_minus_propanal.sbmlCompartment="uVol";
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate.sbmlRole="species";
  space_4_minus_space_4_minus_Deoxy_minus_alpha_minus_D_minus_gluc_minus_4_minus_enuronosyl_space_minus_D_minus_galacturonate.sbmlCompartment="uVol";
  space_5_minus_Dehydro_minus_4_minus_deoxy_minus_D_minus_glucuronate.sbmlRole="species";
  space_5_minus_Dehydro_minus_4_minus_deoxy_minus_D_minus_glucuronate.sbmlCompartment="uVol";
  D_minus_Tagaturonate.sbmlRole="species";
  D_minus_Tagaturonate.sbmlCompartment="uVol";
  D_minus_Mannonate.sbmlRole="species";
  D_minus_Mannonate.sbmlCompartment="uVol";
  D_minus_Xylose.sbmlRole="species";
  D_minus_Xylose.sbmlCompartment="uVol";
  UDP_minus_glucose.sbmlRole="species";
  UDP_minus_glucose.sbmlCompartment="uVol";
  D_minus_Glucose_space_1_minus_phosphate.sbmlRole="species";
  D_minus_Glucose_space_1_minus_phosphate.sbmlCompartment="uVol";
  UDP_minus_glucuronate.sbmlRole="species";
  UDP_minus_glucuronate.sbmlCompartment="uVol";
  D_minus_Xylulose.sbmlRole="species";
  D_minus_Xylulose.sbmlCompartment="uVol";
  Pectate.sbmlRole="species";
  Pectate.sbmlCompartment="uVol";
  D_minus_Galacturonate.sbmlRole="species";
  D_minus_Galacturonate.sbmlCompartment="uVol";
  D_minus_Fructuronate.sbmlRole="species";
  D_minus_Fructuronate.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_arabino_minus_3_minus_Hexulose_space_6_minus_phosphate.sbmlRole="species";
  D_minus_arabino_minus_3_minus_Hexulose_space_6_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Glucuronate.sbmlRole="species";
  D_minus_Glucuronate.sbmlCompartment="uVol";
  L_minus_Xylulose_space_1_minus_phosphate.sbmlRole="species";
  L_minus_Xylulose_space_1_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Lyxose.sbmlRole="species";
  L_minus_Lyxose.sbmlCompartment="uVol";
  L_minus_Xylulose.sbmlRole="species";
  L_minus_Xylulose.sbmlCompartment="uVol";
  L_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  L_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose.sbmlRole="species";
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}