// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04990: space_2_minus_Octaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone <=> space_2_minus_Octaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone 
// R05617: space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate => space_2_minus_Demethylmenaquinone 
// R04986: space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate <=> space_2_minus_Octaprenylphenol 
// R04993: space_2_minus_Demethylmenaquinone <=> Menaquinone 
// R01717: Chorismate => Isochorismate 
// R04030: space_2_minus_Succinylbenzoate <=> space_2_minus_Succinylbenzoyl_minus_CoA 
// R06859: space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone <=> Phylloquinone 
// R07263: space_2_minus_Succinylbenzoyl_minus_CoA => space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoyl_minus_CoA 
// R02166: Ubiquinone => Ubiquinol 
// R04031: space_1R_space_6R_space_minus_6_minus_Hydroxy_minus_2_minus_succinylcyclohexa_minus_2_space_4_minus_diene_minus_1_minus_carboxylate => space_2_minus_Succinylbenzoate 
// R06858: space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate <=> space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_6_space_5_space_3 = 0 M;
  real E5_space_4_space_4_space_2 = 0 M;
  real E4_space_1_space_1_space_minus_ = 0 M;
  real E2_space_1_space_1_space_minus_ = 0 M;
  real E2_space_5_space_1_space_minus_ = 0 M;
  real E4_space_2_space_1_space_113 = 0 M;
  real E6_space_2_space_1_space_26 = 0 M;
  real E4_space_1_space_3_space_36 = 0 M;
  real Chorismate(time) M;
  real Ubiquinol(time) M;
  real Ubiquinone(time) M;
  real space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate(time) M;
  real space_2_minus_Octaprenylphenol(time) M;
  real space_2_minus_Octaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone(time) M;
  real space_2_minus_Octaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone(time) M;
  real Isochorismate(time) M;
  real space_1R_space_6R_space_minus_6_minus_Hydroxy_minus_2_minus_succinylcyclohexa_minus_2_space_4_minus_diene_minus_1_minus_carboxylate(time) M;
  real space_2_minus_Succinylbenzoate(time) M;
  real space_2_minus_Succinylbenzoyl_minus_CoA(time) M;
  real space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoyl_minus_CoA(time) M;
  real space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate(time) M;
  real space_2_minus_Demethylmenaquinone(time) M;
  real Menaquinone(time) M;
  real space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone(time) M;
  real Phylloquinone(time) M;
  real R04990(time) katal;
  extern real R04990.kf;
  extern real R04990.kb;
  real R05617(time) katal;
  extern real R05617.kf;
  extern real R05617.kb;
  real R04986(time) katal;
  extern real R04986.kf;
  extern real R04986.kb;
  real R04993(time) katal;
  extern real R04993.kf;
  extern real R04993.kb;
  real R01717(time) katal;
  extern real R01717.kf;
  extern real R01717.kb;
  real R04030(time) katal;
  extern real R04030.kf;
  extern real R04030.kb;
  real R06859(time) katal;
  extern real R06859.kf;
  extern real R06859.kb;
  real R07263(time) katal;
  extern real R07263.kf;
  extern real R07263.kb;
  real R02166(time) katal;
  extern real R02166.kf;
  extern real R02166.kb;
  real R04031(time) katal;
  extern real R04031.kf;
  extern real R04031.kb;
  real R06858(time) katal;
  extern real R06858.kf;
  extern real R06858.kb;

  // equations
  when (time=time.min) Chorismate = 0;
  Chorismate:time = (-1*R01717)/uVol;
  when (time=time.min) Ubiquinol = 0;
  Ubiquinol:time = (R02166)/uVol;
  when (time=time.min) Ubiquinone = 0;
  Ubiquinone:time = (-1*R02166)/uVol;
  when (time=time.min) space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate = 0;
  space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate:time = (-1*R04986)/uVol;
  when (time=time.min) space_2_minus_Octaprenylphenol = 0;
  space_2_minus_Octaprenylphenol:time = (R04986)/uVol;
  when (time=time.min) space_2_minus_Octaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone = 0;
  space_2_minus_Octaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone:time = (-1*R04990)/uVol;
  when (time=time.min) space_2_minus_Octaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone = 0;
  space_2_minus_Octaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone:time = (R04990)/uVol;
  when (time=time.min) Isochorismate = 0;
  Isochorismate:time = (R01717)/uVol;
  when (time=time.min) space_1R_space_6R_space_minus_6_minus_Hydroxy_minus_2_minus_succinylcyclohexa_minus_2_space_4_minus_diene_minus_1_minus_carboxylate = 0;
  space_1R_space_6R_space_minus_6_minus_Hydroxy_minus_2_minus_succinylcyclohexa_minus_2_space_4_minus_diene_minus_1_minus_carboxylate:time = (-1*R04031)/uVol;
  when (time=time.min) space_2_minus_Succinylbenzoate = 0;
  space_2_minus_Succinylbenzoate:time = (-1*R04030 + R04031)/uVol;
  when (time=time.min) space_2_minus_Succinylbenzoyl_minus_CoA = 0;
  space_2_minus_Succinylbenzoyl_minus_CoA:time = (R04030 + -1*R07263)/uVol;
  when (time=time.min) space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoyl_minus_CoA = 0;
  space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoyl_minus_CoA:time = (R07263)/uVol;
  when (time=time.min) space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate = 0;
  space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate:time = (-1*R05617 + -1*R06858)/uVol;
  when (time=time.min) space_2_minus_Demethylmenaquinone = 0;
  space_2_minus_Demethylmenaquinone:time = (R05617 + -1*R04993)/uVol;
  when (time=time.min) Menaquinone = 0;
  Menaquinone:time = (R04993)/uVol;
  when (time=time.min) space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone = 0;
  space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone:time = (-1*R06859 + R06858)/uVol;
  when (time=time.min) Phylloquinone = 0;
  Phylloquinone:time = (R06859)/uVol;
  R04990 = R04990.kf*space_2_minus_Octaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone - R04990.kb*space_2_minus_Octaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone;
  R05617 = R05617.kf*space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate - R05617.kb*space_2_minus_Demethylmenaquinone;
  R04986 = R04986.kf*space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate - R04986.kb*space_2_minus_Octaprenylphenol;
  R04993 = R04993.kf*space_2_minus_Demethylmenaquinone - R04993.kb*Menaquinone;
  R01717 = R01717.kf*Chorismate - R01717.kb*Isochorismate;
  R04030 = R04030.kf*space_2_minus_Succinylbenzoate - R04030.kb*space_2_minus_Succinylbenzoyl_minus_CoA;
  R06859 = R06859.kf*space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone - R06859.kb*Phylloquinone;
  R07263 = R07263.kf*space_2_minus_Succinylbenzoyl_minus_CoA - R07263.kb*space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoyl_minus_CoA;
  R02166 = R02166.kf*Ubiquinone - R02166.kb*Ubiquinol;
  R04031 = R04031.kf*space_1R_space_6R_space_minus_6_minus_Hydroxy_minus_2_minus_succinylcyclohexa_minus_2_space_4_minus_diene_minus_1_minus_carboxylate - R04031.kb*space_2_minus_Succinylbenzoate;
  R06858 = R06858.kf*space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate - R06858.kb*space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_6_space_5_space_3.sbmlRole="species";
  E1_space_6_space_5_space_3.sbmlCompartment="uVol";
  E5_space_4_space_4_space_2.sbmlRole="species";
  E5_space_4_space_4_space_2.sbmlCompartment="uVol";
  E4_space_1_space_1_space_minus_.sbmlRole="species";
  E4_space_1_space_1_space_minus_.sbmlCompartment="uVol";
  E2_space_1_space_1_space_minus_.sbmlRole="species";
  E2_space_1_space_1_space_minus_.sbmlCompartment="uVol";
  E2_space_5_space_1_space_minus_.sbmlRole="species";
  E2_space_5_space_1_space_minus_.sbmlCompartment="uVol";
  E4_space_2_space_1_space_113.sbmlRole="species";
  E4_space_2_space_1_space_113.sbmlCompartment="uVol";
  E6_space_2_space_1_space_26.sbmlRole="species";
  E6_space_2_space_1_space_26.sbmlCompartment="uVol";
  E4_space_1_space_3_space_36.sbmlRole="species";
  E4_space_1_space_3_space_36.sbmlCompartment="uVol";
  Chorismate.sbmlRole="species";
  Chorismate.sbmlCompartment="uVol";
  Ubiquinol.sbmlRole="species";
  Ubiquinol.sbmlCompartment="uVol";
  Ubiquinone.sbmlRole="species";
  Ubiquinone.sbmlCompartment="uVol";
  space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate.sbmlRole="species";
  space_3_minus_Octaprenyl_minus_4_minus_hydroxybenzoate.sbmlCompartment="uVol";
  space_2_minus_Octaprenylphenol.sbmlRole="species";
  space_2_minus_Octaprenylphenol.sbmlCompartment="uVol";
  space_2_minus_Octaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlRole="species";
  space_2_minus_Octaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlCompartment="uVol";
  space_2_minus_Octaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlRole="species";
  space_2_minus_Octaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlCompartment="uVol";
  Isochorismate.sbmlRole="species";
  Isochorismate.sbmlCompartment="uVol";
  space_1R_space_6R_space_minus_6_minus_Hydroxy_minus_2_minus_succinylcyclohexa_minus_2_space_4_minus_diene_minus_1_minus_carboxylate.sbmlRole="species";
  space_1R_space_6R_space_minus_6_minus_Hydroxy_minus_2_minus_succinylcyclohexa_minus_2_space_4_minus_diene_minus_1_minus_carboxylate.sbmlCompartment="uVol";
  space_2_minus_Succinylbenzoate.sbmlRole="species";
  space_2_minus_Succinylbenzoate.sbmlCompartment="uVol";
  space_2_minus_Succinylbenzoyl_minus_CoA.sbmlRole="species";
  space_2_minus_Succinylbenzoyl_minus_CoA.sbmlCompartment="uVol";
  space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoyl_minus_CoA.sbmlRole="species";
  space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoyl_minus_CoA.sbmlCompartment="uVol";
  space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate.sbmlRole="species";
  space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate.sbmlCompartment="uVol";
  space_2_minus_Demethylmenaquinone.sbmlRole="species";
  space_2_minus_Demethylmenaquinone.sbmlCompartment="uVol";
  Menaquinone.sbmlRole="species";
  Menaquinone.sbmlCompartment="uVol";
  space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone.sbmlRole="species";
  space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone.sbmlCompartment="uVol";
  Phylloquinone.sbmlRole="species";
  Phylloquinone.sbmlCompartment="uVol";
  R04990.sbmlRole="rate";
  R04990.kf.sbmlRole="rate";
  R04990.kb.sbmlRole="rate";
  R05617.sbmlRole="rate";
  R05617.kf.sbmlRole="rate";
  R05617.kb.sbmlRole="rate";
  R04986.sbmlRole="rate";
  R04986.kf.sbmlRole="rate";
  R04986.kb.sbmlRole="rate";
  R04993.sbmlRole="rate";
  R04993.kf.sbmlRole="rate";
  R04993.kb.sbmlRole="rate";
  R01717.sbmlRole="rate";
  R01717.kf.sbmlRole="rate";
  R01717.kb.sbmlRole="rate";
  R04030.sbmlRole="rate";
  R04030.kf.sbmlRole="rate";
  R04030.kb.sbmlRole="rate";
  R06859.sbmlRole="rate";
  R06859.kf.sbmlRole="rate";
  R06859.kb.sbmlRole="rate";
  R07263.sbmlRole="rate";
  R07263.kf.sbmlRole="rate";
  R07263.kb.sbmlRole="rate";
  R02166.sbmlRole="rate";
  R02166.kf.sbmlRole="rate";
  R02166.kb.sbmlRole="rate";
  R04031.sbmlRole="rate";
  R04031.kf.sbmlRole="rate";
  R04031.kb.sbmlRole="rate";
  R06858.sbmlRole="rate";
  R06858.kf.sbmlRole="rate";
  R06858.kb.sbmlRole="rate";
}