// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01771: L_minus_Homoserine <=> O_minus_Phospho_minus_L_minus_homoserine 
// R02565: Betaine_space_aldehyde <=> Betaine 
// R00220: L_minus_Serine => Pyruvate 
// R02528: Methylglyoxal <=> Hydroxyacetone 
// R01513: space_3_minus_Phospho_minus_D_minus_glycerate => space_3_minus_Phosphonooxypyruvate 
// R01773: L_minus_Homoserine => L_minus_Aspartate_space_4_minus_semialdehyde 
// R03425: Glycine Lipoylprotein <=> S_minus_Aminomethyldihydrolipoylprotein CO2 
// R01465: L_minus_Threonine <=> L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid 
// R00480: L_minus_Aspartate <=> space_4_minus_Phospho_minus_L_minus_aspartate 
// R03815: Dihydrolipoylprotein <=> Lipoylprotein 
// R04125: S_minus_Aminomethyldihydrolipoylprotein Tetrahydrofolate <=> Dihydrolipoylprotein space_5_space_10_minus_Methylenetetrahydrofolate NH3 
// R03662: L_minus_Serine <=> L_minus_Seryl_minus_tRNA_space_Ser_space_ 
// R06977: L_minus_Aspartate_space_4_minus_semialdehyde <=> L_minus_2_space_4_minus_Diaminobutanoate 
// R02055: Phosphatidylserine <=> Phosphatidylethanolamine 
// R00996: L_minus_Threonine <=> space_2_minus_Oxobutanoate 
// R00371: Glycine => L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid 
// R01001: L_minus_Cystathionine => L_minus_Cysteine 
// R03654: Glycine <=> Glycyl_minus_tRNA_space_Gly_space_ 
// R00945: space_5_space_10_minus_Methylenetetrahydrofolate Glycine => L_minus_Serine 
// R02291: L_minus_Aspartate_space_4_minus_semialdehyde <=> space_4_minus_Phospho_minus_L_minus_aspartate 
// R04173: O_minus_Phospho_minus_L_minus_serine => space_3_minus_Phosphonooxypyruvate 
// R01466: O_minus_Phospho_minus_L_minus_homoserine <=> L_minus_Threonine 
// R01800: L_minus_Serine <=> Phosphatidylserine 
// R03663: L_minus_Threonine <=> L_minus_Threonyl_minus_tRNA_space_Thr_space_ 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_2_space_1_space_8 = 0 M;
  real E1_space_1_space_1_space_95 = 0 M;
  real E4_space_4_space_1_space_1 = 0 M;
  real E4_space_1_space_1_space_65 = 0 M;
  real E6_space_1_space_1_space_3 = 0 M;
  real E6_space_1_space_1_space_14 = 0 M;
  real E2_space_7_space_2_space_4 = 0 M;
  real E2_space_6_space_1_space_52 = 0 M;
  real E2_space_7_space_8_space_8 = 0 M;
  real E6_space_1_space_1_space_11 = 0 M;
  real E2_space_1_space_2_space_1 = 0 M;
  real E4_space_3_space_1_space_19 = 0 M;
  real E4_space_2_space_3_space_1 = 0 M;
  real E2_space_3_space_1_space_29 = 0 M;
  real E1_space_1_space_1_space_103 = 0 M;
  real E4_space_3_space_1_space_17 = 0 M;
  real E1_space_2_space_1_space_11 = 0 M;
  real E2_space_6_space_1_space_76 = 0 M;
  real E2_space_7_space_1_space_39 = 0 M;
  real E1_space_4_space_4_space_2 = 0 M;
  real E1_space_1_space_1_space_3 = 0 M;
  real E1_space_1_space_1_space_minus_ = 0 M;
  real E2_space_1_space_2_space_10 = 0 M;
  real E1_space_8_space_1_space_4 = 0 M;
  real Dihydrolipoylprotein(time) M;
  real Lipoylprotein(time) M;
  real Betaine_space_aldehyde(time) M;
  real Betaine(time) M;
  real space_3_minus_Phospho_minus_D_minus_glycerate(time) M;
  real L_minus_Threonyl_minus_tRNA_space_Thr_space_(time) M;
  real Phosphatidylethanolamine(time) M;
  real L_minus_Aspartate(time) M;
  real space_3_minus_Phosphonooxypyruvate(time) M;
  real L_minus_Cystathionine(time) M;
  real L_minus_Cysteine(time) M;
  real Glycyl_minus_tRNA_space_Gly_space_(time) M;
  real Phosphatidylserine(time) M;
  real L_minus_Seryl_minus_tRNA_space_Ser_space_(time) M;
  real O_minus_Phospho_minus_L_minus_serine(time) M;
  real Glycine(time) M;
  real L_minus_Serine(time) M;
  real L_minus_Threonine(time) M;
  real space_2_minus_Oxobutanoate(time) M;
  real space_4_minus_Phospho_minus_L_minus_aspartate(time) M;
  real L_minus_2_space_4_minus_Diaminobutanoate(time) M;
  real O_minus_Phospho_minus_L_minus_homoserine(time) M;
  real L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid(time) M;
  real Pyruvate(time) M;
  real L_minus_Homoserine(time) M;
  real L_minus_Aspartate_space_4_minus_semialdehyde(time) M;
  real CO2(time) M;
  real NH3(time) M;
  real Tetrahydrofolate(time) M;
  real Methylglyoxal(time) M;
  real Hydroxyacetone(time) M;
  real space_5_space_10_minus_Methylenetetrahydrofolate(time) M;
  real S_minus_Aminomethyldihydrolipoylprotein(time) M;
  real R01771(time) katal;
  extern real R01771.kf;
  extern real R01771.kb;
  real R02565(time) katal;
  extern real R02565.kf;
  extern real R02565.kb;
  real R00220(time) katal;
  extern real R00220.kf;
  extern real R00220.kb;
  real R02528(time) katal;
  extern real R02528.kf;
  extern real R02528.kb;
  real R01513(time) katal;
  extern real R01513.kf;
  extern real R01513.kb;
  real R01773(time) katal;
  extern real R01773.kf;
  extern real R01773.kb;
  real R03425(time) katal;
  extern real R03425.kf;
  extern real R03425.kb;
  real R01465(time) katal;
  extern real R01465.kf;
  extern real R01465.kb;
  real R00480(time) katal;
  extern real R00480.kf;
  extern real R00480.kb;
  real R03815(time) katal;
  extern real R03815.kf;
  extern real R03815.kb;
  real R04125(time) katal;
  extern real R04125.kf;
  extern real R04125.kb;
  real R03662(time) katal;
  extern real R03662.kf;
  extern real R03662.kb;
  real R06977(time) katal;
  extern real R06977.kf;
  extern real R06977.kb;
  real R02055(time) katal;
  extern real R02055.kf;
  extern real R02055.kb;
  real R00996(time) katal;
  extern real R00996.kf;
  extern real R00996.kb;
  real R00371(time) katal;
  extern real R00371.kf;
  extern real R00371.kb;
  real R01001(time) katal;
  extern real R01001.kf;
  extern real R01001.kb;
  real R03654(time) katal;
  extern real R03654.kf;
  extern real R03654.kb;
  real R00945(time) katal;
  extern real R00945.kf;
  extern real R00945.kb;
  real R02291(time) katal;
  extern real R02291.kf;
  extern real R02291.kb;
  real R04173(time) katal;
  extern real R04173.kf;
  extern real R04173.kb;
  real R01466(time) katal;
  extern real R01466.kf;
  extern real R01466.kb;
  real R01800(time) katal;
  extern real R01800.kf;
  extern real R01800.kb;
  real R03663(time) katal;
  extern real R03663.kf;
  extern real R03663.kb;

  // equations
  when (time=time.min) Dihydrolipoylprotein = 0;
  Dihydrolipoylprotein:time = (-1*R03815 + R04125)/uVol;
  when (time=time.min) Lipoylprotein = 0;
  Lipoylprotein:time = (-1*R03425 + R03815)/uVol;
  when (time=time.min) Betaine_space_aldehyde = 0;
  Betaine_space_aldehyde:time = (-1*R02565)/uVol;
  when (time=time.min) Betaine = 0;
  Betaine:time = (R02565)/uVol;
  when (time=time.min) space_3_minus_Phospho_minus_D_minus_glycerate = 0;
  space_3_minus_Phospho_minus_D_minus_glycerate:time = (-1*R01513)/uVol;
  when (time=time.min) L_minus_Threonyl_minus_tRNA_space_Thr_space_ = 0;
  L_minus_Threonyl_minus_tRNA_space_Thr_space_:time = (R03663)/uVol;
  when (time=time.min) Phosphatidylethanolamine = 0;
  Phosphatidylethanolamine:time = (R02055)/uVol;
  when (time=time.min) L_minus_Aspartate = 0;
  L_minus_Aspartate:time = (-1*R00480)/uVol;
  when (time=time.min) space_3_minus_Phosphonooxypyruvate = 0;
  space_3_minus_Phosphonooxypyruvate:time = (R01513 + R04173)/uVol;
  when (time=time.min) L_minus_Cystathionine = 0;
  L_minus_Cystathionine:time = (-1*R01001)/uVol;
  when (time=time.min) L_minus_Cysteine = 0;
  L_minus_Cysteine:time = (R01001)/uVol;
  when (time=time.min) Glycyl_minus_tRNA_space_Gly_space_ = 0;
  Glycyl_minus_tRNA_space_Gly_space_:time = (R03654)/uVol;
  when (time=time.min) Phosphatidylserine = 0;
  Phosphatidylserine:time = (-1*R02055 + R01800)/uVol;
  when (time=time.min) L_minus_Seryl_minus_tRNA_space_Ser_space_ = 0;
  L_minus_Seryl_minus_tRNA_space_Ser_space_:time = (R03662)/uVol;
  when (time=time.min) O_minus_Phospho_minus_L_minus_serine = 0;
  O_minus_Phospho_minus_L_minus_serine:time = (-1*R04173)/uVol;
  when (time=time.min) Glycine = 0;
  Glycine:time = (-1*R03425 + -1*R00371 + -1*R03654 + -1*R00945)/uVol;
  when (time=time.min) L_minus_Serine = 0;
  L_minus_Serine:time = (-1*R00220 + -1*R03662 + R00945 + -1*R01800)/uVol;
  when (time=time.min) L_minus_Threonine = 0;
  L_minus_Threonine:time = (-1*R01465 + -1*R00996 + R01466 + -1*R03663)/uVol;
  when (time=time.min) space_2_minus_Oxobutanoate = 0;
  space_2_minus_Oxobutanoate:time = (R00996)/uVol;
  when (time=time.min) space_4_minus_Phospho_minus_L_minus_aspartate = 0;
  space_4_minus_Phospho_minus_L_minus_aspartate:time = (R00480 + R02291)/uVol;
  when (time=time.min) L_minus_2_space_4_minus_Diaminobutanoate = 0;
  L_minus_2_space_4_minus_Diaminobutanoate:time = (R06977)/uVol;
  when (time=time.min) O_minus_Phospho_minus_L_minus_homoserine = 0;
  O_minus_Phospho_minus_L_minus_homoserine:time = (R01771 + -1*R01466)/uVol;
  when (time=time.min) L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid = 0;
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid:time = (R01465 + R00371)/uVol;
  when (time=time.min) Pyruvate = 0;
  Pyruvate:time = (R00220)/uVol;
  when (time=time.min) L_minus_Homoserine = 0;
  L_minus_Homoserine:time = (-1*R01771 + -1*R01773)/uVol;
  when (time=time.min) L_minus_Aspartate_space_4_minus_semialdehyde = 0;
  L_minus_Aspartate_space_4_minus_semialdehyde:time = (R01773 + -1*R06977 + -1*R02291)/uVol;
  when (time=time.min) CO2 = 0;
  CO2:time = (R03425)/uVol;
  when (time=time.min) NH3 = 0;
  NH3:time = (R04125)/uVol;
  when (time=time.min) Tetrahydrofolate = 0;
  Tetrahydrofolate:time = (-1*R04125)/uVol;
  when (time=time.min) Methylglyoxal = 0;
  Methylglyoxal:time = (-1*R02528)/uVol;
  when (time=time.min) Hydroxyacetone = 0;
  Hydroxyacetone:time = (R02528)/uVol;
  when (time=time.min) space_5_space_10_minus_Methylenetetrahydrofolate = 0;
  space_5_space_10_minus_Methylenetetrahydrofolate:time = (R04125 + -1*R00945)/uVol;
  when (time=time.min) S_minus_Aminomethyldihydrolipoylprotein = 0;
  S_minus_Aminomethyldihydrolipoylprotein:time = (R03425 + -1*R04125)/uVol;
  R01771 = R01771.kf*L_minus_Homoserine - R01771.kb*O_minus_Phospho_minus_L_minus_homoserine;
  R02565 = R02565.kf*Betaine_space_aldehyde - R02565.kb*Betaine;
  R00220 = R00220.kf*L_minus_Serine - R00220.kb*Pyruvate;
  R02528 = R02528.kf*Methylglyoxal - R02528.kb*Hydroxyacetone;
  R01513 = R01513.kf*space_3_minus_Phospho_minus_D_minus_glycerate - R01513.kb*space_3_minus_Phosphonooxypyruvate;
  R01773 = R01773.kf*L_minus_Homoserine - R01773.kb*L_minus_Aspartate_space_4_minus_semialdehyde;
  R03425 = R03425.kf*Glycine*Lipoylprotein - R03425.kb*S_minus_Aminomethyldihydrolipoylprotein*CO2;
  R01465 = R01465.kf*L_minus_Threonine - R01465.kb*L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid;
  R00480 = R00480.kf*L_minus_Aspartate - R00480.kb*space_4_minus_Phospho_minus_L_minus_aspartate;
  R03815 = R03815.kf*Dihydrolipoylprotein - R03815.kb*Lipoylprotein;
  R04125 = R04125.kf*S_minus_Aminomethyldihydrolipoylprotein*Tetrahydrofolate - R04125.kb*Dihydrolipoylprotein*space_5_space_10_minus_Methylenetetrahydrofolate*NH3;
  R03662 = R03662.kf*L_minus_Serine - R03662.kb*L_minus_Seryl_minus_tRNA_space_Ser_space_;
  R06977 = R06977.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R06977.kb*L_minus_2_space_4_minus_Diaminobutanoate;
  R02055 = R02055.kf*Phosphatidylserine - R02055.kb*Phosphatidylethanolamine;
  R00996 = R00996.kf*L_minus_Threonine - R00996.kb*space_2_minus_Oxobutanoate;
  R00371 = R00371.kf*Glycine - R00371.kb*L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid;
  R01001 = R01001.kf*L_minus_Cystathionine - R01001.kb*L_minus_Cysteine;
  R03654 = R03654.kf*Glycine - R03654.kb*Glycyl_minus_tRNA_space_Gly_space_;
  R00945 = R00945.kf*space_5_space_10_minus_Methylenetetrahydrofolate*Glycine - R00945.kb*L_minus_Serine;
  R02291 = R02291.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R02291.kb*space_4_minus_Phospho_minus_L_minus_aspartate;
  R04173 = R04173.kf*O_minus_Phospho_minus_L_minus_serine - R04173.kb*space_3_minus_Phosphonooxypyruvate;
  R01466 = R01466.kf*O_minus_Phospho_minus_L_minus_homoserine - R01466.kb*L_minus_Threonine;
  R01800 = R01800.kf*L_minus_Serine - R01800.kb*Phosphatidylserine;
  R03663 = R03663.kf*L_minus_Threonine - R03663.kb*L_minus_Threonyl_minus_tRNA_space_Thr_space_;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_2_space_1_space_8.sbmlRole="species";
  E1_space_2_space_1_space_8.sbmlCompartment="uVol";
  E1_space_1_space_1_space_95.sbmlRole="species";
  E1_space_1_space_1_space_95.sbmlCompartment="uVol";
  E4_space_4_space_1_space_1.sbmlRole="species";
  E4_space_4_space_1_space_1.sbmlCompartment="uVol";
  E4_space_1_space_1_space_65.sbmlRole="species";
  E4_space_1_space_1_space_65.sbmlCompartment="uVol";
  E6_space_1_space_1_space_3.sbmlRole="species";
  E6_space_1_space_1_space_3.sbmlCompartment="uVol";
  E6_space_1_space_1_space_14.sbmlRole="species";
  E6_space_1_space_1_space_14.sbmlCompartment="uVol";
  E2_space_7_space_2_space_4.sbmlRole="species";
  E2_space_7_space_2_space_4.sbmlCompartment="uVol";
  E2_space_6_space_1_space_52.sbmlRole="species";
  E2_space_6_space_1_space_52.sbmlCompartment="uVol";
  E2_space_7_space_8_space_8.sbmlRole="species";
  E2_space_7_space_8_space_8.sbmlCompartment="uVol";
  E6_space_1_space_1_space_11.sbmlRole="species";
  E6_space_1_space_1_space_11.sbmlCompartment="uVol";
  E2_space_1_space_2_space_1.sbmlRole="species";
  E2_space_1_space_2_space_1.sbmlCompartment="uVol";
  E4_space_3_space_1_space_19.sbmlRole="species";
  E4_space_3_space_1_space_19.sbmlCompartment="uVol";
  E4_space_2_space_3_space_1.sbmlRole="species";
  E4_space_2_space_3_space_1.sbmlCompartment="uVol";
  E2_space_3_space_1_space_29.sbmlRole="species";
  E2_space_3_space_1_space_29.sbmlCompartment="uVol";
  E1_space_1_space_1_space_103.sbmlRole="species";
  E1_space_1_space_1_space_103.sbmlCompartment="uVol";
  E4_space_3_space_1_space_17.sbmlRole="species";
  E4_space_3_space_1_space_17.sbmlCompartment="uVol";
  E1_space_2_space_1_space_11.sbmlRole="species";
  E1_space_2_space_1_space_11.sbmlCompartment="uVol";
  E2_space_6_space_1_space_76.sbmlRole="species";
  E2_space_6_space_1_space_76.sbmlCompartment="uVol";
  E2_space_7_space_1_space_39.sbmlRole="species";
  E2_space_7_space_1_space_39.sbmlCompartment="uVol";
  E1_space_4_space_4_space_2.sbmlRole="species";
  E1_space_4_space_4_space_2.sbmlCompartment="uVol";
  E1_space_1_space_1_space_3.sbmlRole="species";
  E1_space_1_space_1_space_3.sbmlCompartment="uVol";
  E1_space_1_space_1_space_minus_.sbmlRole="species";
  E1_space_1_space_1_space_minus_.sbmlCompartment="uVol";
  E2_space_1_space_2_space_10.sbmlRole="species";
  E2_space_1_space_2_space_10.sbmlCompartment="uVol";
  E1_space_8_space_1_space_4.sbmlRole="species";
  E1_space_8_space_1_space_4.sbmlCompartment="uVol";
  Dihydrolipoylprotein.sbmlRole="species";
  Dihydrolipoylprotein.sbmlCompartment="uVol";
  Lipoylprotein.sbmlRole="species";
  Lipoylprotein.sbmlCompartment="uVol";
  Betaine_space_aldehyde.sbmlRole="species";
  Betaine_space_aldehyde.sbmlCompartment="uVol";
  Betaine.sbmlRole="species";
  Betaine.sbmlCompartment="uVol";
  space_3_minus_Phospho_minus_D_minus_glycerate.sbmlRole="species";
  space_3_minus_Phospho_minus_D_minus_glycerate.sbmlCompartment="uVol";
  L_minus_Threonyl_minus_tRNA_space_Thr_space_.sbmlRole="species";
  L_minus_Threonyl_minus_tRNA_space_Thr_space_.sbmlCompartment="uVol";
  Phosphatidylethanolamine.sbmlRole="species";
  Phosphatidylethanolamine.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  space_3_minus_Phosphonooxypyruvate.sbmlRole="species";
  space_3_minus_Phosphonooxypyruvate.sbmlCompartment="uVol";
  L_minus_Cystathionine.sbmlRole="species";
  L_minus_Cystathionine.sbmlCompartment="uVol";
  L_minus_Cysteine.sbmlRole="species";
  L_minus_Cysteine.sbmlCompartment="uVol";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlRole="species";
  Glycyl_minus_tRNA_space_Gly_space_.sbmlCompartment="uVol";
  Phosphatidylserine.sbmlRole="species";
  Phosphatidylserine.sbmlCompartment="uVol";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlRole="species";
  L_minus_Seryl_minus_tRNA_space_Ser_space_.sbmlCompartment="uVol";
  O_minus_Phospho_minus_L_minus_serine.sbmlRole="species";
  O_minus_Phospho_minus_L_minus_serine.sbmlCompartment="uVol";
  Glycine.sbmlRole="species";
  Glycine.sbmlCompartment="uVol";
  L_minus_Serine.sbmlRole="species";
  L_minus_Serine.sbmlCompartment="uVol";
  L_minus_Threonine.sbmlRole="species";
  L_minus_Threonine.sbmlCompartment="uVol";
  space_2_minus_Oxobutanoate.sbmlRole="species";
  space_2_minus_Oxobutanoate.sbmlCompartment="uVol";
  space_4_minus_Phospho_minus_L_minus_aspartate.sbmlRole="species";
  space_4_minus_Phospho_minus_L_minus_aspartate.sbmlCompartment="uVol";
  L_minus_2_space_4_minus_Diaminobutanoate.sbmlRole="species";
  L_minus_2_space_4_minus_Diaminobutanoate.sbmlCompartment="uVol";
  O_minus_Phospho_minus_L_minus_homoserine.sbmlRole="species";
  O_minus_Phospho_minus_L_minus_homoserine.sbmlCompartment="uVol";
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid.sbmlRole="species";
  L_minus_2_minus_Amino_minus_3_minus_oxobutanoic_space_acid.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  L_minus_Homoserine.sbmlRole="species";
  L_minus_Homoserine.sbmlCompartment="uVol";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlRole="species";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlCompartment="uVol";
  CO2.sbmlRole="species";
  CO2.sbmlCompartment="uVol";
  NH3.sbmlRole="species";
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