// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R08092: space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA <=> space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA 
// R08089: Citronellyl_minus_CoA <=> Geranoyl_minus_CoA 
// R08095: space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA <=> space_3_minus_Methylcrotonyl_minus_CoA 
// R08097: Geranic_space_acid <=> trans_minus_Geranyl_minus_CoA 
// R08093: space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA <=> space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA 
// R08091: space_7_minus_Methyl_minus_3_minus_oxo_minus_6_minus_octenoyl_minus_CoA <=> space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA 
// R08094: space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA <=> space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_2_space_1_space_17 = 0 M;
  real E2_space_8_space_3_space_minus_ = 0 M;
  real E1_space_3_space_99_space_minus_ = 0 M;
  real E1_space_1_space_1_space_35 = 0 M;
  real E2_space_3_space_1_space_16 = 0 M;
  real Geranic_space_acid(time) M;
  real space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA(time) M;
  real space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA(time) M;
  real trans_minus_Geranyl_minus_CoA(time) M;
  real Geranoyl_minus_CoA(time) M;
  real space_7_minus_Methyl_minus_3_minus_oxo_minus_6_minus_octenoyl_minus_CoA(time) M;
  real space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA(time) M;
  real space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA(time) M;
  real space_3_minus_Methylcrotonyl_minus_CoA(time) M;
  real Citronellyl_minus_CoA(time) M;
  real R08092(time) katal;
  extern real R08092.kf;
  extern real R08092.kb;
  real R08089(time) katal;
  extern real R08089.kf;
  extern real R08089.kb;
  real R08095(time) katal;
  extern real R08095.kf;
  extern real R08095.kb;
  real R08097(time) katal;
  extern real R08097.kf;
  extern real R08097.kb;
  real R08093(time) katal;
  extern real R08093.kf;
  extern real R08093.kb;
  real R08091(time) katal;
  extern real R08091.kf;
  extern real R08091.kb;
  real R08094(time) katal;
  extern real R08094.kf;
  extern real R08094.kb;

  // equations
  when (time=time.min) Geranic_space_acid = 0;
  Geranic_space_acid:time = (-1*R08097)/uVol;
  when (time=time.min) space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA = 0;
  space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA:time = (R08092 + -1*R08093)/uVol;
  when (time=time.min) space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA = 0;
  space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA:time = (R08093 + -1*R08094)/uVol;
  when (time=time.min) trans_minus_Geranyl_minus_CoA = 0;
  trans_minus_Geranyl_minus_CoA:time = (R08097)/uVol;
  when (time=time.min) Geranoyl_minus_CoA = 0;
  Geranoyl_minus_CoA:time = (R08089)/uVol;
  when (time=time.min) space_7_minus_Methyl_minus_3_minus_oxo_minus_6_minus_octenoyl_minus_CoA = 0;
  space_7_minus_Methyl_minus_3_minus_oxo_minus_6_minus_octenoyl_minus_CoA:time = (-1*R08091)/uVol;
  when (time=time.min) space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA = 0;
  space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA:time = (-1*R08092 + R08091)/uVol;
  when (time=time.min) space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA = 0;
  space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA:time = (-1*R08095 + R08094)/uVol;
  when (time=time.min) space_3_minus_Methylcrotonyl_minus_CoA = 0;
  space_3_minus_Methylcrotonyl_minus_CoA:time = (R08095)/uVol;
  when (time=time.min) Citronellyl_minus_CoA = 0;
  Citronellyl_minus_CoA:time = (-1*R08089)/uVol;
  R08092 = R08092.kf*space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA - R08092.kb*space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA;
  R08089 = R08089.kf*Citronellyl_minus_CoA - R08089.kb*Geranoyl_minus_CoA;
  R08095 = R08095.kf*space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA - R08095.kb*space_3_minus_Methylcrotonyl_minus_CoA;
  R08097 = R08097.kf*Geranic_space_acid - R08097.kb*trans_minus_Geranyl_minus_CoA;
  R08093 = R08093.kf*space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA - R08093.kb*space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA;
  R08091 = R08091.kf*space_7_minus_Methyl_minus_3_minus_oxo_minus_6_minus_octenoyl_minus_CoA - R08091.kb*space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA;
  R08094 = R08094.kf*space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA - R08094.kb*space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_2_space_1_space_17.sbmlRole="species";
  E4_space_2_space_1_space_17.sbmlCompartment="uVol";
  E2_space_8_space_3_space_minus_.sbmlRole="species";
  E2_space_8_space_3_space_minus_.sbmlCompartment="uVol";
  E1_space_3_space_99_space_minus_.sbmlRole="species";
  E1_space_3_space_99_space_minus_.sbmlCompartment="uVol";
  E1_space_1_space_1_space_35.sbmlRole="species";
  E1_space_1_space_1_space_35.sbmlCompartment="uVol";
  E2_space_3_space_1_space_16.sbmlRole="species";
  E2_space_3_space_1_space_16.sbmlCompartment="uVol";
  Geranic_space_acid.sbmlRole="species";
  Geranic_space_acid.sbmlCompartment="uVol";
  space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA.sbmlRole="species";
  space_2E_space_minus_5_minus_Methylhexa_minus_2_space_4_minus_dienoyl_minus_CoA.sbmlCompartment="uVol";
  space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA.sbmlRole="species";
  space_3_minus_Hydroxy_minus_5_minus_methylhex_minus_4_minus_enoyl_minus_CoA.sbmlCompartment="uVol";
  trans_minus_Geranyl_minus_CoA.sbmlRole="species";
  trans_minus_Geranyl_minus_CoA.sbmlCompartment="uVol";
  Geranoyl_minus_CoA.sbmlRole="species";
  Geranoyl_minus_CoA.sbmlCompartment="uVol";
  space_7_minus_Methyl_minus_3_minus_oxo_minus_6_minus_octenoyl_minus_CoA.sbmlRole="species";
  space_7_minus_Methyl_minus_3_minus_oxo_minus_6_minus_octenoyl_minus_CoA.sbmlCompartment="uVol";
  space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA.sbmlRole="species";
  space_5_minus_Methylhex_minus_4_minus_enoyl_minus_CoA.sbmlCompartment="uVol";
  space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA.sbmlRole="species";
  space_5_minus_Methyl_minus_3_minus_oxo_minus_4_minus_hexenoyl_minus_CoA.sbmlCompartment="uVol";
  space_3_minus_Methylcrotonyl_minus_CoA.sbmlRole="species";
  space_3_minus_Methylcrotonyl_minus_CoA.sbmlCompartment="uVol";
  Citronellyl_minus_CoA.sbmlRole="species";
  Citronellyl_minus_CoA.sbmlCompartment="uVol";
  R08092.sbmlRole="rate";
  R08092.kf.sbmlRole="rate";
  R08092.kb.sbmlRole="rate";
  R08089.sbmlRole="rate";
  R08089.kf.sbmlRole="rate";
  R08089.kb.sbmlRole="rate";
  R08095.sbmlRole="rate";
  R08095.kf.sbmlRole="rate";
  R08095.kb.sbmlRole="rate";
  R08097.sbmlRole="rate";
  R08097.kf.sbmlRole="rate";
  R08097.kb.sbmlRole="rate";
  R08093.sbmlRole="rate";
  R08093.kf.sbmlRole="rate";
  R08093.kb.sbmlRole="rate";
  R08091.sbmlRole="rate";
  R08091.kf.sbmlRole="rate";
  R08091.kb.sbmlRole="rate";
  R08094.sbmlRole="rate";
  R08094.kf.sbmlRole="rate";
  R08094.kb.sbmlRole="rate";
}