// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03975: Glycochenodeoxycholate <=> Chenodeoxycholate 
// R05835: Glycocholate <=> space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate Glycine 
// R04487: Taurodeoxycholate <=> space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate 
// R03977: Taurochenodeoxycholate <=> Chenodeoxycholate 
// R04486: Glycodeoxycholate <=> space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate 
// R04506: space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al <=> space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanate 
// R04805: space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane <=> space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al 
// R02797: Taurine space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate <=> Taurocholate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E3_space_5_space_1_space_24 = 0 M;
  real E1_space_1_space_1_space_1 = 0 M;
  real E1_space_2_space_1_space_3 = 0 M;
  real Taurine(time) M;
  real Taurodeoxycholate(time) M;
  real Taurocholate(time) M;
  real space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate(time) M;
  real space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate(time) M;
  real Glycocholate(time) M;
  real Glycine(time) M;
  real Glycodeoxycholate(time) M;
  real space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane(time) M;
  real space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al(time) M;
  real space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanate(time) M;
  real Taurochenodeoxycholate(time) M;
  real Chenodeoxycholate(time) M;
  real Glycochenodeoxycholate(time) M;
  real R03975(time) katal;
  extern real R03975.kf;
  extern real R03975.kb;
  real R05835(time) katal;
  extern real R05835.kf;
  extern real R05835.kb;
  real R04487(time) katal;
  extern real R04487.kf;
  extern real R04487.kb;
  real R03977(time) katal;
  extern real R03977.kf;
  extern real R03977.kb;
  real R04486(time) katal;
  extern real R04486.kf;
  extern real R04486.kb;
  real R04506(time) katal;
  extern real R04506.kf;
  extern real R04506.kb;
  real R04805(time) katal;
  extern real R04805.kf;
  extern real R04805.kb;
  real R02797(time) katal;
  extern real R02797.kf;
  extern real R02797.kb;

  // equations
  when (time=time.min) Taurine = 0;
  Taurine:time = (-1*R02797)/uVol;
  when (time=time.min) Taurodeoxycholate = 0;
  Taurodeoxycholate:time = (-1*R04487)/uVol;
  when (time=time.min) Taurocholate = 0;
  Taurocholate:time = (R02797)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate = 0;
  space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate:time = (R05835 + -1*R02797)/uVol;
  when (time=time.min) space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate = 0;
  space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate:time = (R04487 + R04486)/uVol;
  when (time=time.min) Glycocholate = 0;
  Glycocholate:time = (-1*R05835)/uVol;
  when (time=time.min) Glycine = 0;
  Glycine:time = (R05835)/uVol;
  when (time=time.min) Glycodeoxycholate = 0;
  Glycodeoxycholate:time = (-1*R04486)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane = 0;
  space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane:time = (-1*R04805)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al = 0;
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al:time = (-1*R04506 + R04805)/uVol;
  when (time=time.min) space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanate = 0;
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanate:time = (R04506)/uVol;
  when (time=time.min) Taurochenodeoxycholate = 0;
  Taurochenodeoxycholate:time = (-1*R03977)/uVol;
  when (time=time.min) Chenodeoxycholate = 0;
  Chenodeoxycholate:time = (R03975 + R03977)/uVol;
  when (time=time.min) Glycochenodeoxycholate = 0;
  Glycochenodeoxycholate:time = (-1*R03975)/uVol;
  R03975 = R03975.kf*Glycochenodeoxycholate - R03975.kb*Chenodeoxycholate;
  R05835 = R05835.kf*Glycocholate - R05835.kb*space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate*Glycine;
  R04487 = R04487.kf*Taurodeoxycholate - R04487.kb*space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate;
  R03977 = R03977.kf*Taurochenodeoxycholate - R03977.kb*Chenodeoxycholate;
  R04486 = R04486.kf*Glycodeoxycholate - R04486.kb*space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate;
  R04506 = R04506.kf*space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al - R04506.kb*space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanate;
  R04805 = R04805.kf*space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane - R04805.kb*space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al;
  R02797 = R02797.kf*Taurine*space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate - R02797.kb*Taurocholate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E3_space_5_space_1_space_24.sbmlRole="species";
  E3_space_5_space_1_space_24.sbmlCompartment="uVol";
  E1_space_1_space_1_space_1.sbmlRole="species";
  E1_space_1_space_1_space_1.sbmlCompartment="uVol";
  E1_space_2_space_1_space_3.sbmlRole="species";
  E1_space_2_space_1_space_3.sbmlCompartment="uVol";
  Taurine.sbmlRole="species";
  Taurine.sbmlCompartment="uVol";
  Taurodeoxycholate.sbmlRole="species";
  Taurodeoxycholate.sbmlCompartment="uVol";
  Taurocholate.sbmlRole="species";
  Taurocholate.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate.sbmlRole="species";
  space_3_alpha_space_7_alpha_space_12_alpha_minus_Trihydroxy_minus_5_beta_minus_cholanate.sbmlCompartment="uVol";
  space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate.sbmlRole="species";
  space_3_alpha_space_12_alpha_minus_Dihydroxy_minus_5_beta_minus_cholanate.sbmlCompartment="uVol";
  Glycocholate.sbmlRole="species";
  Glycocholate.sbmlCompartment="uVol";
  Glycine.sbmlRole="species";
  Glycine.sbmlCompartment="uVol";
  Glycodeoxycholate.sbmlRole="species";
  Glycodeoxycholate.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane.sbmlRole="species";
  space_3_alpha_space_7_alpha_space_26_minus_Trihydroxy_minus_5_beta_minus_cholestane.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al.sbmlRole="species";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestan_minus_26_minus_al.sbmlCompartment="uVol";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanate.sbmlRole="species";
  space_3_alpha_space_7_alpha_minus_Dihydroxy_minus_5_beta_minus_cholestanate.sbmlCompartment="uVol";
  Taurochenodeoxycholate.sbmlRole="species";
  Taurochenodeoxycholate.sbmlCompartment="uVol";
  Chenodeoxycholate.sbmlRole="species";
  Chenodeoxycholate.sbmlCompartment="uVol";
  Glycochenodeoxycholate.sbmlRole="species";
  Glycochenodeoxycholate.sbmlCompartment="uVol";
  R03975.sbmlRole="rate";
  R03975.kf.sbmlRole="rate";
  R03975.kb.sbmlRole="rate";
  R05835.sbmlRole="rate";
  R05835.kf.sbmlRole="rate";
  R05835.kb.sbmlRole="rate";
  R04487.sbmlRole="rate";
  R04487.kf.sbmlRole="rate";
  R04487.kb.sbmlRole="rate";
  R03977.sbmlRole="rate";
  R03977.kf.sbmlRole="rate";
  R03977.kb.sbmlRole="rate";
  R04486.sbmlRole="rate";
  R04486.kf.sbmlRole="rate";
  R04486.kb.sbmlRole="rate";
  R04506.sbmlRole="rate";
  R04506.kf.sbmlRole="rate";
  R04506.kb.sbmlRole="rate";
  R04805.sbmlRole="rate";
  R04805.kf.sbmlRole="rate";
  R04805.kb.sbmlRole="rate";
  R02797.sbmlRole="rate";
  R02797.kf.sbmlRole="rate";
  R02797.kb.sbmlRole="rate";
}