// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01986: space_4_minus_Aminobutanal <=> space_4_minus_Aminobutanoate 
// R02283: N_minus_Acetylornithine => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde 
// R02649: N_minus_Acetyl_minus_L_minus_glutamate <=> N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate 
// R03443: N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde => N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate 
// R01401: space_5_space_minus_Methylthioadenosine <=> Adenine 
// R03313: L_minus_Glutamate_space_5_minus_semialdehyde => L_minus_Glutamyl_space_5_minus_phosphate 
// R05050: N4_minus_Acetylaminobutanal <=> space_4_minus_Acetamidobutanoate 
// R02282: N_minus_Acetylornithine => L_minus_Ornithine 
// R01398: Carbamoyl_space_phosphate L_minus_Ornithine <=> L_minus_Citrulline 
// R01086: N_minus_space_L_minus_Arginino_space_succinate <=> Fumarate L_minus_Arginine 
// R00259: L_minus_Glutamate <=> N_minus_Acetyl_minus_L_minus_glutamate 
// R01954: L_minus_Citrulline L_minus_Aspartate <=> N_minus_space_L_minus_Arginino_space_succinate 
// R00239: L_minus_Glutamate <=> L_minus_Glutamyl_space_5_minus_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_2_space_8 = 0 M;
  real E2_space_7_space_2_space_11 = 0 M;
  real E2_space_3_space_1_space_1 = 0 M;
  real E2_space_6_space_1_space_11 = 0 M;
  real E2_space_3_space_1_space_35 = 0 M;
  real E2_space_1_space_3_space_3 = 0 M;
  real E1_space_2_space_1_space_3 = 0 M;
  real E6_space_3_space_4_space_5 = 0 M;
  real E4_space_3_space_2_space_1 = 0 M;
  real E3_space_2_space_2_space_16 = 0 M;
  real E1_space_2_space_1_space_38 = 0 M;
  real E1_space_2_space_1_space_41 = 0 M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate(time) M;
  real L_minus_Glutamyl_space_5_minus_phosphate(time) M;
  real L_minus_Glutamate_space_5_minus_semialdehyde(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde(time) M;
  real N_minus_Acetyl_minus_L_minus_glutamate(time) M;
  real L_minus_Glutamate(time) M;
  real Carbamoyl_space_phosphate(time) M;
  real N_minus_Acetylornithine(time) M;
  real L_minus_Aspartate(time) M;
  real L_minus_Citrulline(time) M;
  real N4_minus_Acetylaminobutanal(time) M;
  real space_4_minus_Acetamidobutanoate(time) M;
  real L_minus_Ornithine(time) M;
  real N_minus_space_L_minus_Arginino_space_succinate(time) M;
  real space_4_minus_Aminobutanal(time) M;
  real space_4_minus_Aminobutanoate(time) M;
  real L_minus_Arginine(time) M;
  real Fumarate(time) M;
  real space_5_space_minus_Methylthioadenosine(time) M;
  real Adenine(time) M;
  real R01986(time) katal;
  extern real R01986.kf;
  extern real R01986.kb;
  real R02283(time) katal;
  extern real R02283.kf;
  extern real R02283.kb;
  real R02649(time) katal;
  extern real R02649.kf;
  extern real R02649.kb;
  real R03443(time) katal;
  extern real R03443.kf;
  extern real R03443.kb;
  real R01401(time) katal;
  extern real R01401.kf;
  extern real R01401.kb;
  real R03313(time) katal;
  extern real R03313.kf;
  extern real R03313.kb;
  real R05050(time) katal;
  extern real R05050.kf;
  extern real R05050.kb;
  real R02282(time) katal;
  extern real R02282.kf;
  extern real R02282.kb;
  real R01398(time) katal;
  extern real R01398.kf;
  extern real R01398.kb;
  real R01086(time) katal;
  extern real R01086.kf;
  extern real R01086.kb;
  real R00259(time) katal;
  extern real R00259.kf;
  extern real R00259.kb;
  real R01954(time) katal;
  extern real R01954.kf;
  extern real R01954.kb;
  real R00239(time) katal;
  extern real R00239.kf;
  extern real R00239.kb;

  // equations
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate:time = (R02649 + R03443)/uVol;
  when (time=time.min) L_minus_Glutamyl_space_5_minus_phosphate = 0;
  L_minus_Glutamyl_space_5_minus_phosphate:time = (R03313 + R00239)/uVol;
  when (time=time.min) L_minus_Glutamate_space_5_minus_semialdehyde = 0;
  L_minus_Glutamate_space_5_minus_semialdehyde:time = (-1*R03313)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde = 0;
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde:time = (R02283 + -1*R03443)/uVol;
  when (time=time.min) N_minus_Acetyl_minus_L_minus_glutamate = 0;
  N_minus_Acetyl_minus_L_minus_glutamate:time = (-1*R02649 + R00259)/uVol;
  when (time=time.min) L_minus_Glutamate = 0;
  L_minus_Glutamate:time = (-1*R00259 + -1*R00239)/uVol;
  when (time=time.min) Carbamoyl_space_phosphate = 0;
  Carbamoyl_space_phosphate:time = (-1*R01398)/uVol;
  when (time=time.min) N_minus_Acetylornithine = 0;
  N_minus_Acetylornithine:time = (-1*R02283 + -1*R02282)/uVol;
  when (time=time.min) L_minus_Aspartate = 0;
  L_minus_Aspartate:time = (-1*R01954)/uVol;
  when (time=time.min) L_minus_Citrulline = 0;
  L_minus_Citrulline:time = (R01398 + -1*R01954)/uVol;
  when (time=time.min) N4_minus_Acetylaminobutanal = 0;
  N4_minus_Acetylaminobutanal:time = (-1*R05050)/uVol;
  when (time=time.min) space_4_minus_Acetamidobutanoate = 0;
  space_4_minus_Acetamidobutanoate:time = (R05050)/uVol;
  when (time=time.min) L_minus_Ornithine = 0;
  L_minus_Ornithine:time = (R02282 + -1*R01398)/uVol;
  when (time=time.min) N_minus_space_L_minus_Arginino_space_succinate = 0;
  N_minus_space_L_minus_Arginino_space_succinate:time = (-1*R01086 + R01954)/uVol;
  when (time=time.min) space_4_minus_Aminobutanal = 0;
  space_4_minus_Aminobutanal:time = (-1*R01986)/uVol;
  when (time=time.min) space_4_minus_Aminobutanoate = 0;
  space_4_minus_Aminobutanoate:time = (R01986)/uVol;
  when (time=time.min) L_minus_Arginine = 0;
  L_minus_Arginine:time = (R01086)/uVol;
  when (time=time.min) Fumarate = 0;
  Fumarate:time = (R01086)/uVol;
  when (time=time.min) space_5_space_minus_Methylthioadenosine = 0;
  space_5_space_minus_Methylthioadenosine:time = (-1*R01401)/uVol;
  when (time=time.min) Adenine = 0;
  Adenine:time = (R01401)/uVol;
  R01986 = R01986.kf*space_4_minus_Aminobutanal - R01986.kb*space_4_minus_Aminobutanoate;
  R02283 = R02283.kf*N_minus_Acetylornithine - R02283.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde;
  R02649 = R02649.kf*N_minus_Acetyl_minus_L_minus_glutamate - R02649.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate;
  R03443 = R03443.kf*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde - R03443.kb*N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate;
  R01401 = R01401.kf*space_5_space_minus_Methylthioadenosine - R01401.kb*Adenine;
  R03313 = R03313.kf*L_minus_Glutamate_space_5_minus_semialdehyde - R03313.kb*L_minus_Glutamyl_space_5_minus_phosphate;
  R05050 = R05050.kf*N4_minus_Acetylaminobutanal - R05050.kb*space_4_minus_Acetamidobutanoate;
  R02282 = R02282.kf*N_minus_Acetylornithine - R02282.kb*L_minus_Ornithine;
  R01398 = R01398.kf*Carbamoyl_space_phosphate*L_minus_Ornithine - R01398.kb*L_minus_Citrulline;
  R01086 = R01086.kf*N_minus_space_L_minus_Arginino_space_succinate - R01086.kb*Fumarate*L_minus_Arginine;
  R00259 = R00259.kf*L_minus_Glutamate - R00259.kb*N_minus_Acetyl_minus_L_minus_glutamate;
  R01954 = R01954.kf*L_minus_Citrulline*L_minus_Aspartate - R01954.kb*N_minus_space_L_minus_Arginino_space_succinate;
  R00239 = R00239.kf*L_minus_Glutamate - R00239.kb*L_minus_Glutamyl_space_5_minus_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_2_space_8.sbmlRole="species";
  E2_space_7_space_2_space_8.sbmlCompartment="uVol";
  E2_space_7_space_2_space_11.sbmlRole="species";
  E2_space_7_space_2_space_11.sbmlCompartment="uVol";
  E2_space_3_space_1_space_1.sbmlRole="species";
  E2_space_3_space_1_space_1.sbmlCompartment="uVol";
  E2_space_6_space_1_space_11.sbmlRole="species";
  E2_space_6_space_1_space_11.sbmlCompartment="uVol";
  E2_space_3_space_1_space_35.sbmlRole="species";
  E2_space_3_space_1_space_35.sbmlCompartment="uVol";
  E2_space_1_space_3_space_3.sbmlRole="species";
  E2_space_1_space_3_space_3.sbmlCompartment="uVol";
  E1_space_2_space_1_space_3.sbmlRole="species";
  E1_space_2_space_1_space_3.sbmlCompartment="uVol";
  E6_space_3_space_4_space_5.sbmlRole="species";
  E6_space_3_space_4_space_5.sbmlCompartment="uVol";
  E4_space_3_space_2_space_1.sbmlRole="species";
  E4_space_3_space_2_space_1.sbmlCompartment="uVol";
  E3_space_2_space_2_space_16.sbmlRole="species";
  E3_space_2_space_2_space_16.sbmlCompartment="uVol";
  E1_space_2_space_1_space_38.sbmlRole="species";
  E1_space_2_space_1_space_38.sbmlCompartment="uVol";
  E1_space_2_space_1_space_41.sbmlRole="species";
  E1_space_2_space_1_space_41.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Glutamyl_space_5_minus_phosphate.sbmlRole="species";
  L_minus_Glutamyl_space_5_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Glutamate_space_5_minus_semialdehyde.sbmlRole="species";
  L_minus_Glutamate_space_5_minus_semialdehyde.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate_space_5_minus_semialdehyde.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlRole="species";
  N_minus_Acetyl_minus_L_minus_glutamate.sbmlCompartment="uVol";
  L_minus_Glutamate.sbmlRole="species";
  L_minus_Glutamate.sbmlCompartment="uVol";
  Carbamoyl_space_phosphate.sbmlRole="species";
  Carbamoyl_space_phosphate.sbmlCompartment="uVol";
  N_minus_Acetylornithine.sbmlRole="species";
  N_minus_Acetylornithine.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  L_minus_Citrulline.sbmlRole="species";
  L_minus_Citrulline.sbmlCompartment="uVol";
  N4_minus_Acetylaminobutanal.sbmlRole="species";
  N4_minus_Acetylaminobutanal.sbmlCompartment="uVol";
  space_4_minus_Acetamidobutanoate.sbmlRole="species";
  space_4_minus_Acetamidobutanoate.sbmlCompartment="uVol";
  L_minus_Ornithine.sbmlRole="species";
  L_minus_Ornithine.sbmlCompartment="uVol";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlRole="species";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlCompartment="uVol";
  space_4_minus_Aminobutanal.sbmlRole="species";
  space_4_minus_Aminobutanal.sbmlCompartment="uVol";
  space_4_minus_Aminobutanoate.sbmlRole="species";
  space_4_minus_Aminobutanoate.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  Fumarate.sbmlRole="species";
  Fumarate.sbmlCompartment="uVol";
  space_5_space_minus_Methylthioadenosine.sbmlRole="species";
  space_5_space_minus_Methylthioadenosine.sbmlCompartment="uVol";
  Adenine.sbmlRole="species";
  Adenine.sbmlCompartment="uVol";
  R01986.sbmlRole="rate";
  R01986.kf.sbmlRole="rate";
  R01986.kb.sbmlRole="rate";
  R02283.sbmlRole="rate";
  R02283.kf.sbmlRole="rate";
  R02283.kb.sbmlRole="rate";
  R02649.sbmlRole="rate";
  R02649.kf.sbmlRole="rate";
  R02649.kb.sbmlRole="rate";
  R03443.sbmlRole="rate";
  R03443.kf.sbmlRole="rate";
  R03443.kb.sbmlRole="rate";
  R01401.sbmlRole="rate";
  R01401.kf.sbmlRole="rate";
  R01401.kb.sbmlRole="rate";
  R03313.sbmlRole="rate";
  R03313.kf.sbmlRole="rate";
  R03313.kb.sbmlRole="rate";
  R05050.sbmlRole="rate";
  R05050.kf.sbmlRole="rate";
  R05050.kb.sbmlRole="rate";
  R02282.sbmlRole="rate";
  R02282.kf.sbmlRole="rate";
  R02282.kb.sbmlRole="rate";
  R01398.sbmlRole="rate";
  R01398.kf.sbmlRole="rate";
  R01398.kb.sbmlRole="rate";
  R01086.sbmlRole="rate";
  R01086.kf.sbmlRole="rate";
  R01086.kb.sbmlRole="rate";
  R00259.sbmlRole="rate";
  R00259.kf.sbmlRole="rate";
  R00259.kb.sbmlRole="rate";
  R01954.sbmlRole="rate";
  R01954.kf.sbmlRole="rate";
  R01954.kb.sbmlRole="rate";
  R00239.sbmlRole="rate";
  R00239.kf.sbmlRole="rate";
  R00239.kb.sbmlRole="rate";
}