// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01884: Creatinine => Creatine 
// R03291: trans_minus_4_minus_Hydroxy_minus_L_minus_proline <=> L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate 
// R01086: N_minus_space_L_minus_Arginino_space_succinate => Fumarate L_minus_Arginine 
// R03661: L_minus_Proline <=> L_minus_Prolyl_minus_tRNA_space_Pro_space_ 
// R01398: Carbamoyl_space_phosphate L_minus_Ornithine => L_minus_Citrulline 
// R01954: L_minus_Citrulline L_minus_Aspartate => N_minus_space_L_minus_Arginino_space_succinate 
// R01248: L_minus_Proline => space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate 
// R03646: L_minus_Arginine => L_minus_Arginyl_minus_tRNA_space_Arg_space_ 
// R05052: L_minus_erythro_minus_4_minus_Hydroxyglutamate <=> D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_6_space_1_space_1 = 0 M;
  real E2_space_1_space_3_space_3 = 0 M;
  real E6_space_1_space_1_space_15 = 0 M;
  real E6_space_3_space_4_space_5 = 0 M;
  real E1_space_5_space_1_space_2 = 0 M;
  real E4_space_3_space_2_space_1 = 0 M;
  real E3_space_5_space_2_space_10 = 0 M;
  real E6_space_1_space_1_space_19 = 0 M;
  real D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate(time) M;
  real Carbamoyl_space_phosphate(time) M;
  real L_minus_Prolyl_minus_tRNA_space_Pro_space_(time) M;
  real L_minus_Aspartate(time) M;
  real L_minus_erythro_minus_4_minus_Hydroxyglutamate(time) M;
  real L_minus_Citrulline(time) M;
  real L_minus_Ornithine(time) M;
  real space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate(time) M;
  real L_minus_Proline(time) M;
  real trans_minus_4_minus_Hydroxy_minus_L_minus_proline(time) M;
  real L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate(time) M;
  real N_minus_space_L_minus_Arginino_space_succinate(time) M;
  real L_minus_Arginine(time) M;
  real Fumarate(time) M;
  real Creatine(time) M;
  real Creatinine(time) M;
  real L_minus_Arginyl_minus_tRNA_space_Arg_space_(time) M;
  real R01884(time) katal;
  extern real R01884.kf;
  extern real R01884.kb;
  real R03291(time) katal;
  extern real R03291.kf;
  extern real R03291.kb;
  real R01086(time) katal;
  extern real R01086.kf;
  extern real R01086.kb;
  real R03661(time) katal;
  extern real R03661.kf;
  extern real R03661.kb;
  real R01398(time) katal;
  extern real R01398.kf;
  extern real R01398.kb;
  real R01954(time) katal;
  extern real R01954.kf;
  extern real R01954.kb;
  real R01248(time) katal;
  extern real R01248.kf;
  extern real R01248.kb;
  real R03646(time) katal;
  extern real R03646.kf;
  extern real R03646.kb;
  real R05052(time) katal;
  extern real R05052.kf;
  extern real R05052.kb;

  // equations
  when (time=time.min) D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate = 0;
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate:time = (R05052)/uVol;
  when (time=time.min) Carbamoyl_space_phosphate = 0;
  Carbamoyl_space_phosphate:time = (-1*R01398)/uVol;
  when (time=time.min) L_minus_Prolyl_minus_tRNA_space_Pro_space_ = 0;
  L_minus_Prolyl_minus_tRNA_space_Pro_space_:time = (R03661)/uVol;
  when (time=time.min) L_minus_Aspartate = 0;
  L_minus_Aspartate:time = (-1*R01954)/uVol;
  when (time=time.min) L_minus_erythro_minus_4_minus_Hydroxyglutamate = 0;
  L_minus_erythro_minus_4_minus_Hydroxyglutamate:time = (-1*R05052)/uVol;
  when (time=time.min) L_minus_Citrulline = 0;
  L_minus_Citrulline:time = (R01398 + -1*R01954)/uVol;
  when (time=time.min) L_minus_Ornithine = 0;
  L_minus_Ornithine:time = (-1*R01398)/uVol;
  when (time=time.min) space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate = 0;
  space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate:time = (R01248)/uVol;
  when (time=time.min) L_minus_Proline = 0;
  L_minus_Proline:time = (-1*R03661 + -1*R01248)/uVol;
  when (time=time.min) trans_minus_4_minus_Hydroxy_minus_L_minus_proline = 0;
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline:time = (-1*R03291)/uVol;
  when (time=time.min) L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate = 0;
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate:time = (R03291)/uVol;
  when (time=time.min) N_minus_space_L_minus_Arginino_space_succinate = 0;
  N_minus_space_L_minus_Arginino_space_succinate:time = (-1*R01086 + R01954)/uVol;
  when (time=time.min) L_minus_Arginine = 0;
  L_minus_Arginine:time = (R01086 + -1*R03646)/uVol;
  when (time=time.min) Fumarate = 0;
  Fumarate:time = (R01086)/uVol;
  when (time=time.min) Creatine = 0;
  Creatine:time = (R01884)/uVol;
  when (time=time.min) Creatinine = 0;
  Creatinine:time = (-1*R01884)/uVol;
  when (time=time.min) L_minus_Arginyl_minus_tRNA_space_Arg_space_ = 0;
  L_minus_Arginyl_minus_tRNA_space_Arg_space_:time = (R03646)/uVol;
  R01884 = R01884.kf*Creatinine - R01884.kb*Creatine;
  R03291 = R03291.kf*trans_minus_4_minus_Hydroxy_minus_L_minus_proline - R03291.kb*L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate;
  R01086 = R01086.kf*N_minus_space_L_minus_Arginino_space_succinate - R01086.kb*Fumarate*L_minus_Arginine;
  R03661 = R03661.kf*L_minus_Proline - R03661.kb*L_minus_Prolyl_minus_tRNA_space_Pro_space_;
  R01398 = R01398.kf*Carbamoyl_space_phosphate*L_minus_Ornithine - R01398.kb*L_minus_Citrulline;
  R01954 = R01954.kf*L_minus_Citrulline*L_minus_Aspartate - R01954.kb*N_minus_space_L_minus_Arginino_space_succinate;
  R01248 = R01248.kf*L_minus_Proline - R01248.kb*space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate;
  R03646 = R03646.kf*L_minus_Arginine - R03646.kb*L_minus_Arginyl_minus_tRNA_space_Arg_space_;
  R05052 = R05052.kf*L_minus_erythro_minus_4_minus_Hydroxyglutamate - R05052.kb*D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E2_space_1_space_3_space_3.sbmlRole="species";
  E2_space_1_space_3_space_3.sbmlCompartment="uVol";
  E6_space_1_space_1_space_15.sbmlRole="species";
  E6_space_1_space_1_space_15.sbmlCompartment="uVol";
  E6_space_3_space_4_space_5.sbmlRole="species";
  E6_space_3_space_4_space_5.sbmlCompartment="uVol";
  E1_space_5_space_1_space_2.sbmlRole="species";
  E1_space_5_space_1_space_2.sbmlCompartment="uVol";
  E4_space_3_space_2_space_1.sbmlRole="species";
  E4_space_3_space_2_space_1.sbmlCompartment="uVol";
  E3_space_5_space_2_space_10.sbmlRole="species";
  E3_space_5_space_2_space_10.sbmlCompartment="uVol";
  E6_space_1_space_1_space_19.sbmlRole="species";
  E6_space_1_space_1_space_19.sbmlCompartment="uVol";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlRole="species";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlCompartment="uVol";
  Carbamoyl_space_phosphate.sbmlRole="species";
  Carbamoyl_space_phosphate.sbmlCompartment="uVol";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlRole="species";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlRole="species";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlCompartment="uVol";
  L_minus_Citrulline.sbmlRole="species";
  L_minus_Citrulline.sbmlCompartment="uVol";
  L_minus_Ornithine.sbmlRole="species";
  L_minus_Ornithine.sbmlCompartment="uVol";
  space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate.sbmlRole="species";
  space_S_space_minus_1_minus_Pyrroline_minus_5_minus_carboxylate.sbmlCompartment="uVol";
  L_minus_Proline.sbmlRole="species";
  L_minus_Proline.sbmlCompartment="uVol";
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline.sbmlRole="species";
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline.sbmlCompartment="uVol";
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate.sbmlRole="species";
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate.sbmlCompartment="uVol";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlRole="species";
  N_minus_space_L_minus_Arginino_space_succinate.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  Fumarate.sbmlRole="species";
  Fumarate.sbmlCompartment="uVol";
  Creatine.sbmlRole="species";
  Creatine.sbmlCompartment="uVol";
  Creatinine.sbmlRole="species";
  Creatinine.sbmlCompartment="uVol";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlRole="species";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlCompartment="uVol";
  R01884.sbmlRole="rate";
  R01884.kf.sbmlRole="rate";
  R01884.kb.sbmlRole="rate";
  R03291.sbmlRole="rate";
  R03291.kf.sbmlRole="rate";
  R03291.kb.sbmlRole="rate";
  R01086.sbmlRole="rate";
  R01086.kf.sbmlRole="rate";
  R01086.kb.sbmlRole="rate";
  R03661.sbmlRole="rate";
  R03661.kf.sbmlRole="rate";
  R03661.kb.sbmlRole="rate";
  R01398.sbmlRole="rate";
  R01398.kf.sbmlRole="rate";
  R01398.kb.sbmlRole="rate";
  R01954.sbmlRole="rate";
  R01954.kf.sbmlRole="rate";
  R01954.kb.sbmlRole="rate";
  R01248.sbmlRole="rate";
  R01248.kf.sbmlRole="rate";
  R01248.kb.sbmlRole="rate";
  R03646.sbmlRole="rate";
  R03646.kf.sbmlRole="rate";
  R03646.kb.sbmlRole="rate";
  R05052.sbmlRole="rate";
  R05052.kf.sbmlRole="rate";
  R05052.kb.sbmlRole="rate";
}