// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate to xxx_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde to xxx_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one to xxx_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one due to JSim namespace restrictions
// WARNING: Renamed variable _space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione to xxx_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Glutathionyl_space_cyclophosphamide to xxx_space_4_minus_Glutathionyl_space_cyclophosphamide due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R08281: Aldophosphamide <=> Alcophosphamide 
// R08310: _space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one <=> _space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione 
// R08306: _space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate <=> _space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde 
// R08280: Aldophosphamide <=> _space_4_minus_Glutathionyl_space_cyclophosphamide 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_1_space_1 = 0 M;
  real E2_space_5_space_1_space_18 = 0 M;
  real xxx_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate(time) M;
  real xxx_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde(time) M;
  real xxx_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one(time) M;
  real xxx_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione(time) M;
  real xxx_space_4_minus_Glutathionyl_space_cyclophosphamide(time) M;
  real Aldophosphamide(time) M;
  real Alcophosphamide(time) M;
  real R08281(time) katal;
  extern real R08281.kf;
  extern real R08281.kb;
  real R08310(time) katal;
  extern real R08310.kf;
  extern real R08310.kb;
  real R08306(time) katal;
  extern real R08306.kf;
  extern real R08306.kb;
  real R08280(time) katal;
  extern real R08280.kf;
  extern real R08280.kb;

  // equations
  when (time=time.min) xxx_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate = 0;
  (xxx_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate*uVol):time = -1*R08306;
  when (time=time.min) xxx_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde = 0;
  (xxx_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde*uVol):time = R08306;
  when (time=time.min) xxx_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one = 0;
  (xxx_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one*uVol):time = -1*R08310;
  when (time=time.min) xxx_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione = 0;
  (xxx_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione*uVol):time = R08310;
  when (time=time.min) xxx_space_4_minus_Glutathionyl_space_cyclophosphamide = 0;
  (xxx_space_4_minus_Glutathionyl_space_cyclophosphamide*uVol):time = R08280;
  when (time=time.min) Aldophosphamide = 0;
  (Aldophosphamide*uVol):time = -1*R08281 + -1*R08280;
  when (time=time.min) Alcophosphamide = 0;
  (Alcophosphamide*uVol):time = R08281;
  R08281 = R08281.kf*Aldophosphamide - R08281.kb*Alcophosphamide;
  R08310 = R08310.kf*_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one - R08310.kb*_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione;
  R08306 = R08306.kf*_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate - R08306.kb*_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde;
  R08280 = R08280.kf*Aldophosphamide - R08280.kb*_space_4_minus_Glutathionyl_space_cyclophosphamide;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_1_space_1.sbmlRole="species";
  E1_space_1_space_1_space_1.sbmlCompartment="uVol";
  E2_space_5_space_1_space_18.sbmlRole="species";
  E2_space_5_space_1_space_18.sbmlCompartment="uVol";
  xxx_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate.sbmlRole="species";
  xxx_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate.sbmlName="_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate";
  xxx_space_2_minus_Phenyl_minus_1_space_3_minus_propanediol_space_monocarbamate.sbmlCompartment="uVol";
  xxx_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde.sbmlRole="species";
  xxx_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde.sbmlName="_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde";
  xxx_space_3_minus_Carbamoyl_minus_2_minus_phenylpropionaldehyde.sbmlCompartment="uVol";
  xxx_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one.sbmlRole="species";
  xxx_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one.sbmlName="_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one";
  xxx_space_4_minus_Hydroxy_minus_5_minus_phenyltetrahydro_minus_1_space_3_minus_oxazin_minus_2_minus_one.sbmlCompartment="uVol";
  xxx_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione.sbmlRole="species";
  xxx_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione.sbmlName="_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione";
  xxx_space_5_minus_Phenyl_minus_1_space_3_minus_oxazinane_minus_2_space_4_minus_dione.sbmlCompartment="uVol";
  xxx_space_4_minus_Glutathionyl_space_cyclophosphamide.sbmlRole="species";
  xxx_space_4_minus_Glutathionyl_space_cyclophosphamide.sbmlName="_space_4_minus_Glutathionyl_space_cyclophosphamide";
  xxx_space_4_minus_Glutathionyl_space_cyclophosphamide.sbmlCompartment="uVol";
  Aldophosphamide.sbmlRole="species";
  Aldophosphamide.sbmlCompartment="uVol";
  Alcophosphamide.sbmlRole="species";
  Alcophosphamide.sbmlCompartment="uVol";
  R08281.sbmlRole="rate";
  R08281.kf.sbmlRole="rate";
  R08281.kb.sbmlRole="rate";
  R08310.sbmlRole="rate";
  R08310.kf.sbmlRole="rate";
  R08310.kb.sbmlRole="rate";
  R08306.sbmlRole="rate";
  R08306.kf.sbmlRole="rate";
  R08306.kb.sbmlRole="rate";
  R08280.sbmlRole="rate";
  R08280.kf.sbmlRole="rate";
  R08280.kb.sbmlRole="rate";
}