// This model generated automatically from SBML
// WARNING: Renamed variable _space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose to xxx_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00840: Inositol_space_1_minus_phosphate => D_minus_Glucose_space_6_minus_phosphate 
// R06514: _space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose => dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose 
// R02777: dTDP_minus_6_minus_deoxy_minus_L_minus_mannose => dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose 
// R02328: D_minus_Glucose_space_1_minus_phosphate => dTDP_minus_glucose 
// R00299: D_minus_Glucose <=> D_minus_Glucose_space_6_minus_phosphate 
// R06513: dTDP_minus_glucose => _space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose 
// R01185: Inositol_space_1_minus_phosphate => myo_minus_Inositol 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E5_space_5_space_1_space_4 = 0 M;
  real E2_space_7_space_1_space_2 = 0 M;
  real E2_space_7_space_7_space_24 = 0 M;
  real E4_space_2_space_1_space_46 = 0 M;
  real E5_space_1_space_3_space_13 = 0 M;
  real E1_space_1_space_1_space_133 = 0 M;
  real E3_space_1_space_3_space_25 = 0 M;
  real D_minus_Glucose(time) M;
  real D_minus_Glucose_space_6_minus_phosphate(time) M;
  real D_minus_Glucose_space_1_minus_phosphate(time) M;
  real dTDP_minus_glucose(time) M;
  real xxx_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose(time) M;
  real dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose(time) M;
  real dTDP_minus_6_minus_deoxy_minus_L_minus_mannose(time) M;
  real Inositol_space_1_minus_phosphate(time) M;
  real myo_minus_Inositol(time) M;
  real R00840(time) katal;
  extern real R00840.kf;
  extern real R00840.kb;
  real R06514(time) katal;
  extern real R06514.kf;
  extern real R06514.kb;
  real R02777(time) katal;
  extern real R02777.kf;
  extern real R02777.kb;
  real R02328(time) katal;
  extern real R02328.kf;
  extern real R02328.kb;
  real R00299(time) katal;
  extern real R00299.kf;
  extern real R00299.kb;
  real R06513(time) katal;
  extern real R06513.kf;
  extern real R06513.kb;
  real R01185(time) katal;
  extern real R01185.kf;
  extern real R01185.kb;

  // equations
  when (time=time.min) D_minus_Glucose = 0;
  (D_minus_Glucose*uVol):time = -1*R00299;
  when (time=time.min) D_minus_Glucose_space_6_minus_phosphate = 0;
  (D_minus_Glucose_space_6_minus_phosphate*uVol):time = R00840 + R00299;
  when (time=time.min) D_minus_Glucose_space_1_minus_phosphate = 0;
  (D_minus_Glucose_space_1_minus_phosphate*uVol):time = -1*R02328;
  when (time=time.min) dTDP_minus_glucose = 0;
  (dTDP_minus_glucose*uVol):time = R02328 + -1*R06513;
  when (time=time.min) xxx_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose = 0;
  (xxx_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose*uVol):time = -1*R06514 + R06513;
  when (time=time.min) dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose = 0;
  (dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose*uVol):time = R06514 + R02777;
  when (time=time.min) dTDP_minus_6_minus_deoxy_minus_L_minus_mannose = 0;
  (dTDP_minus_6_minus_deoxy_minus_L_minus_mannose*uVol):time = -1*R02777;
  when (time=time.min) Inositol_space_1_minus_phosphate = 0;
  (Inositol_space_1_minus_phosphate*uVol):time = -1*R00840 + -1*R01185;
  when (time=time.min) myo_minus_Inositol = 0;
  (myo_minus_Inositol*uVol):time = R01185;
  R00840 = R00840.kf*Inositol_space_1_minus_phosphate - R00840.kb*D_minus_Glucose_space_6_minus_phosphate;
  R06514 = R06514.kf*_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose - R06514.kb*dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose;
  R02777 = R02777.kf*dTDP_minus_6_minus_deoxy_minus_L_minus_mannose - R02777.kb*dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose;
  R02328 = R02328.kf*D_minus_Glucose_space_1_minus_phosphate - R02328.kb*dTDP_minus_glucose;
  R00299 = R00299.kf*D_minus_Glucose - R00299.kb*D_minus_Glucose_space_6_minus_phosphate;
  R06513 = R06513.kf*dTDP_minus_glucose - R06513.kb*_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose;
  R01185 = R01185.kf*Inositol_space_1_minus_phosphate - R01185.kb*myo_minus_Inositol;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E5_space_5_space_1_space_4.sbmlRole="species";
  E5_space_5_space_1_space_4.sbmlCompartment="uVol";
  E2_space_7_space_1_space_2.sbmlRole="species";
  E2_space_7_space_1_space_2.sbmlCompartment="uVol";
  E2_space_7_space_7_space_24.sbmlRole="species";
  E2_space_7_space_7_space_24.sbmlCompartment="uVol";
  E4_space_2_space_1_space_46.sbmlRole="species";
  E4_space_2_space_1_space_46.sbmlCompartment="uVol";
  E5_space_1_space_3_space_13.sbmlRole="species";
  E5_space_1_space_3_space_13.sbmlCompartment="uVol";
  E1_space_1_space_1_space_133.sbmlRole="species";
  E1_space_1_space_1_space_133.sbmlCompartment="uVol";
  E3_space_1_space_3_space_25.sbmlRole="species";
  E3_space_1_space_3_space_25.sbmlCompartment="uVol";
  D_minus_Glucose.sbmlRole="species";
  D_minus_Glucose.sbmlCompartment="uVol";
  D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species";
  D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Glucose_space_1_minus_phosphate.sbmlRole="species";
  D_minus_Glucose_space_1_minus_phosphate.sbmlCompartment="uVol";
  dTDP_minus_glucose.sbmlRole="species";
  dTDP_minus_glucose.sbmlCompartment="uVol";
  xxx_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose.sbmlRole="species";
  xxx_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose.sbmlName="_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose";
  xxx_space_4_space_6_minus_Dideoxy_minus_4_minus_oxo_minus_dTDP_minus_D_minus_glucose.sbmlCompartment="uVol";
  dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose.sbmlRole="species";
  dTDP_minus_4_minus_dehydro_minus_6_minus_deoxy_minus_L_minus_mannose.sbmlCompartment="uVol";
  dTDP_minus_6_minus_deoxy_minus_L_minus_mannose.sbmlRole="species";
  dTDP_minus_6_minus_deoxy_minus_L_minus_mannose.sbmlCompartment="uVol";
  Inositol_space_1_minus_phosphate.sbmlRole="species";
  Inositol_space_1_minus_phosphate.sbmlCompartment="uVol";
  myo_minus_Inositol.sbmlRole="species";
  myo_minus_Inositol.sbmlCompartment="uVol";
  R00840.sbmlRole="rate";
  R00840.kf.sbmlRole="rate";
  R00840.kb.sbmlRole="rate";
  R06514.sbmlRole="rate";
  R06514.kf.sbmlRole="rate";
  R06514.kb.sbmlRole="rate";
  R02777.sbmlRole="rate";
  R02777.kf.sbmlRole="rate";
  R02777.kb.sbmlRole="rate";
  R02328.sbmlRole="rate";
  R02328.kf.sbmlRole="rate";
  R02328.kb.sbmlRole="rate";
  R00299.sbmlRole="rate";
  R00299.kf.sbmlRole="rate";
  R00299.kb.sbmlRole="rate";
  R06513.sbmlRole="rate";
  R06513.kf.sbmlRole="rate";
  R06513.kb.sbmlRole="rate";
  R01185.sbmlRole="rate";
  R01185.kf.sbmlRole="rate";
  R01185.kb.sbmlRole="rate";
}