// This model generated automatically from SBML

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02003: Geranyl_space_diphosphate Isopentenyl_space_diphosphate <=> trans_space_trans_minus_Farnesyl_space_diphosphate 
// R01658: Dimethylallyl_space_diphosphate Isopentenyl_space_diphosphate <=> Geranyl_space_diphosphate 
// R05555: trans_space_trans_minus_Farnesyl_space_diphosphate => trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate 
// R06447: trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate <=> di_minus_trans_space_poly_minus_cis_minus_Undecaprenyl_space_diphosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_5_space_1_space_10 = 0 M;
  real E2_space_5_space_1_space_1 = 0 M;
  real E2_space_5_space_1_space_31 = 0 M;
  real Dimethylallyl_space_diphosphate(time) M;
  real Geranyl_space_diphosphate(time) M;
  real Isopentenyl_space_diphosphate(time) M;
  real trans_space_trans_minus_Farnesyl_space_diphosphate(time) M;
  real trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate(time) M;
  real di_minus_trans_space_poly_minus_cis_minus_Undecaprenyl_space_diphosphate(time) M;
  real R02003(time) katal;
  extern real R02003.kf;
  extern real R02003.kb;
  real R01658(time) katal;
  extern real R01658.kf;
  extern real R01658.kb;
  real R05555(time) katal;
  extern real R05555.kf;
  extern real R05555.kb;
  real R06447(time) katal;
  extern real R06447.kf;
  extern real R06447.kb;

  // equations
  when (time=time.min) Dimethylallyl_space_diphosphate = 0;
  (Dimethylallyl_space_diphosphate*uVol):time = -1*R01658;
  when (time=time.min) Geranyl_space_diphosphate = 0;
  (Geranyl_space_diphosphate*uVol):time = -1*R02003 + R01658;
  when (time=time.min) Isopentenyl_space_diphosphate = 0;
  (Isopentenyl_space_diphosphate*uVol):time = -1*R02003 + -1*R01658;
  when (time=time.min) trans_space_trans_minus_Farnesyl_space_diphosphate = 0;
  (trans_space_trans_minus_Farnesyl_space_diphosphate*uVol):time = R02003 + -1*R05555;
  when (time=time.min) trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate = 0;
  (trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate*uVol):time = R05555 + -1*R06447;
  when (time=time.min) di_minus_trans_space_poly_minus_cis_minus_Undecaprenyl_space_diphosphate = 0;
  (di_minus_trans_space_poly_minus_cis_minus_Undecaprenyl_space_diphosphate*uVol):time = R06447;
  R02003 = R02003.kf*Geranyl_space_diphosphate*Isopentenyl_space_diphosphate - R02003.kb*trans_space_trans_minus_Farnesyl_space_diphosphate;
  R01658 = R01658.kf*Dimethylallyl_space_diphosphate*Isopentenyl_space_diphosphate - R01658.kb*Geranyl_space_diphosphate;
  R05555 = R05555.kf*trans_space_trans_minus_Farnesyl_space_diphosphate - R05555.kb*trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate;
  R06447 = R06447.kf*trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate - R06447.kb*di_minus_trans_space_poly_minus_cis_minus_Undecaprenyl_space_diphosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_5_space_1_space_10.sbmlRole="species";
  E2_space_5_space_1_space_10.sbmlCompartment="uVol";
  E2_space_5_space_1_space_1.sbmlRole="species";
  E2_space_5_space_1_space_1.sbmlCompartment="uVol";
  E2_space_5_space_1_space_31.sbmlRole="species";
  E2_space_5_space_1_space_31.sbmlCompartment="uVol";
  Dimethylallyl_space_diphosphate.sbmlRole="species";
  Dimethylallyl_space_diphosphate.sbmlCompartment="uVol";
  Geranyl_space_diphosphate.sbmlRole="species";
  Geranyl_space_diphosphate.sbmlCompartment="uVol";
  Isopentenyl_space_diphosphate.sbmlRole="species";
  Isopentenyl_space_diphosphate.sbmlCompartment="uVol";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlRole="species";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlCompartment="uVol";
  trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate.sbmlRole="species";
  trans_space_trans_space_cis_minus_Geranylgeranyl_space_diphosphate.sbmlCompartment="uVol";
  di_minus_trans_space_poly_minus_cis_minus_Undecaprenyl_space_diphosphate.sbmlRole="species";
  di_minus_trans_space_poly_minus_cis_minus_Undecaprenyl_space_diphosphate.sbmlCompartment="uVol";
  R02003.sbmlRole="rate";
  R02003.kf.sbmlRole="rate";
  R02003.kb.sbmlRole="rate";
  R01658.sbmlRole="rate";
  R01658.kf.sbmlRole="rate";
  R01658.kb.sbmlRole="rate";
  R05555.sbmlRole="rate";
  R05555.kf.sbmlRole="rate";
  R05555.kb.sbmlRole="rate";
  R06447.sbmlRole="rate";
  R06447.kf.sbmlRole="rate";
  R06447.kb.sbmlRole="rate";
}