// This model generated automatically from SBML // WARNING: Renamed variable _beta__minus_D_minus_Glucose_space_6_minus_phosphate to xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate due to JSim namespace restrictions // WARNING: Renamed variable _space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ to xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ due to JSim namespace restrictions // WARNING: Renamed variable _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate to xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate due to JSim namespace restrictions // WARNING: Renamed variable _alpha__minus_D_minus_Glucose_space_6_minus_phosphate to xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate due to JSim namespace restrictions // WARNING: Renamed variable _beta__minus_D_minus_Fructose_space_6_minus_phosphate to xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate due to JSim namespace restrictions // WARNING: Renamed variable _beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate to xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate due to JSim namespace restrictions // WARNING: Renamed variable _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal to xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal due to JSim namespace restrictions // WARNING: Renamed variable _space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate to xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate due to JSim namespace restrictions // WARNING: Renamed variable _space_3_minus_Phospho_minus_D_minus_glycerate to xxx_space_3_minus_Phospho_minus_D_minus_glycerate due to JSim namespace restrictions // WARNING: Renamed variable _space_2_minus_Phospho_minus_D_minus_glycerate to xxx_space_2_minus_Phospho_minus_D_minus_glycerate due to JSim namespace restrictions // unit definitions import nsrunit; unit conversion off; // SBML property definitions property sbmlRole=string; property sbmlName=string; property sbmlCompartment=string; // SBML reactions // R04779: _beta__minus_D_minus_Fructose_space_6_minus_phosphate <=> _beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate // R03321: _beta__minus_D_minus_Glucose_space_6_minus_phosphate => _beta__minus_D_minus_Fructose_space_6_minus_phosphate // R01015: _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal => Glycerone_space_phosphate // R01070: _beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate => _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal Glycerone_space_phosphate // R02739: _alpha__minus_D_minus_Glucose_space_6_minus_phosphate => _beta__minus_D_minus_Glucose_space_6_minus_phosphate // R07618: Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine => Enzyme_space_N6_minus__space_lipoyl_space_lysine // R01512: _space_3_minus_Phospho_minus_D_minus_glycerate => _space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate // R01061: _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal => _space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate // R00014: Pyruvate Thiamin_space_diphosphate <=> _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate // R01518: _space_2_minus_Phospho_minus_D_minus_glycerate => _space_3_minus_Phospho_minus_D_minus_glycerate // R02569: Acetyl_minus_CoA Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine => _space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ // R02740: _alpha__minus_D_minus_Glucose_space_6_minus_phosphate => _beta__minus_D_minus_Fructose_space_6_minus_phosphate // R02738: D_minus_Glucose <=> _alpha__minus_D_minus_Glucose_space_6_minus_phosphate // R03270: _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate Enzyme_space_N6_minus__space_lipoyl_space_lysine <=> _space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ Thiamin_space_diphosphate // R00200: Pyruvate <=> Phosphoenolpyruvate // R00658: _space_2_minus_Phospho_minus_D_minus_glycerate => Phosphoenolpyruvate math main { realDomain time second; time.min=0; extern time.max; extern time.delta; // variable definitions real default = 1 L; real uVol = 1 L; real E2_space_3_space_1_space_12 = 0 M; real E1_space_8_space_1_space_4 = 0 M; real E5_space_3_space_1_space_1 = 0 M; real E5_space_3_space_1_space_9 = 0 M; real E1_space_2_space_4_space_1 = 0 M; real E4_space_1_space_2_space_13 = 0 M; real E2_space_7_space_2_space_3 = 0 M; real E5_space_4_space_2_space_1 = 0 M; real E4_space_2_space_1_space_11 = 0 M; real E2_space_7_space_1_space_40 = 0 M; real E1_space_2_space_1_space_12 = 0 M; real E2_space_7_space_1_space_11 = 0 M; real E2_space_7_space_1_space_69 = 0 M; real Acetyl_minus_CoA(time) M; real Glycerone_space_phosphate(time) M; real Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine(time) M; real xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate(time) M; real xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_(time) M; real Enzyme_space_N6_minus__space_lipoyl_space_lysine(time) M; real Thiamin_space_diphosphate(time) M; real xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate(time) M; real xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate(time) M; real xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate(time) M; real xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate(time) M; real xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal(time) M; real xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate(time) M; real xxx_space_3_minus_Phospho_minus_D_minus_glycerate(time) M; real xxx_space_2_minus_Phospho_minus_D_minus_glycerate(time) M; real Phosphoenolpyruvate(time) M; real Pyruvate(time) M; real D_minus_Glucose(time) M; real R04779(time) katal; extern real R04779.kf; extern real R04779.kb; real R03321(time) katal; extern real R03321.kf; extern real R03321.kb; real R01015(time) katal; extern real R01015.kf; extern real R01015.kb; real R01070(time) katal; extern real R01070.kf; extern real R01070.kb; real R02739(time) katal; extern real R02739.kf; extern real R02739.kb; real R07618(time) katal; extern real R07618.kf; extern real R07618.kb; real R01512(time) katal; extern real R01512.kf; extern real R01512.kb; real R01061(time) katal; extern real R01061.kf; extern real R01061.kb; real R00014(time) katal; extern real R00014.kf; extern real R00014.kb; real R01518(time) katal; extern real R01518.kf; extern real R01518.kb; real R02569(time) katal; extern real R02569.kf; extern real R02569.kb; real R02740(time) katal; extern real R02740.kf; extern real R02740.kb; real R02738(time) katal; extern real R02738.kf; extern real R02738.kb; real R03270(time) katal; extern real R03270.kf; extern real R03270.kb; real R00200(time) katal; extern real R00200.kf; extern real R00200.kb; real R00658(time) katal; extern real R00658.kf; extern real R00658.kb; // equations when (time=time.min) Acetyl_minus_CoA = 0; (Acetyl_minus_CoA*uVol):time = -1*R02569; when (time=time.min) Glycerone_space_phosphate = 0; (Glycerone_space_phosphate*uVol):time = R01015 + R01070; when (time=time.min) Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine = 0; (Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine*uVol):time = -1*R07618 + -1*R02569; when (time=time.min) xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate = 0; (xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate*uVol):time = -1*R03321 + R02739; when (time=time.min) xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ = 0; (xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_*uVol):time = R02569 + R03270; when (time=time.min) Enzyme_space_N6_minus__space_lipoyl_space_lysine = 0; (Enzyme_space_N6_minus__space_lipoyl_space_lysine*uVol):time = R07618 + -1*R03270; when (time=time.min) Thiamin_space_diphosphate = 0; (Thiamin_space_diphosphate*uVol):time = -1*R00014 + R03270; when (time=time.min) xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate = 0; (xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate*uVol):time = R00014 + -1*R03270; when (time=time.min) xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate = 0; (xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate*uVol):time = -1*R02739 + -1*R02740 + R02738; when (time=time.min) xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate = 0; (xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate*uVol):time = -1*R04779 + R03321 + R02740; when (time=time.min) xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate = 0; (xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate*uVol):time = R04779 + -1*R01070; when (time=time.min) xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal = 0; (xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal*uVol):time = -1*R01015 + R01070 + -1*R01061; when (time=time.min) xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate = 0; (xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate*uVol):time = R01512 + R01061; when (time=time.min) xxx_space_3_minus_Phospho_minus_D_minus_glycerate = 0; (xxx_space_3_minus_Phospho_minus_D_minus_glycerate*uVol):time = -1*R01512 + R01518; when (time=time.min) xxx_space_2_minus_Phospho_minus_D_minus_glycerate = 0; (xxx_space_2_minus_Phospho_minus_D_minus_glycerate*uVol):time = -1*R01518 + -1*R00658; when (time=time.min) Phosphoenolpyruvate = 0; (Phosphoenolpyruvate*uVol):time = R00200 + R00658; when (time=time.min) Pyruvate = 0; (Pyruvate*uVol):time = -1*R00014 + -1*R00200; when (time=time.min) D_minus_Glucose = 0; (D_minus_Glucose*uVol):time = -1*R02738; R04779 = R04779.kf*_beta__minus_D_minus_Fructose_space_6_minus_phosphate - R04779.kb*_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate; R03321 = R03321.kf*_beta__minus_D_minus_Glucose_space_6_minus_phosphate - R03321.kb*_beta__minus_D_minus_Fructose_space_6_minus_phosphate; R01015 = R01015.kf*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal - R01015.kb*Glycerone_space_phosphate; R01070 = R01070.kf*_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate - R01070.kb*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal*Glycerone_space_phosphate; R02739 = R02739.kf*_alpha__minus_D_minus_Glucose_space_6_minus_phosphate - R02739.kb*_beta__minus_D_minus_Glucose_space_6_minus_phosphate; R07618 = R07618.kf*Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine - R07618.kb*Enzyme_space_N6_minus__space_lipoyl_space_lysine; R01512 = R01512.kf*_space_3_minus_Phospho_minus_D_minus_glycerate - R01512.kb*_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate; R01061 = R01061.kf*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal - R01061.kb*_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate; R00014 = R00014.kf*Pyruvate*Thiamin_space_diphosphate - R00014.kb*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate; R01518 = R01518.kf*_space_2_minus_Phospho_minus_D_minus_glycerate - R01518.kb*_space_3_minus_Phospho_minus_D_minus_glycerate; R02569 = R02569.kf*Acetyl_minus_CoA*Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine - R02569.kb*_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_; R02740 = R02740.kf*_alpha__minus_D_minus_Glucose_space_6_minus_phosphate - R02740.kb*_beta__minus_D_minus_Fructose_space_6_minus_phosphate; R02738 = R02738.kf*D_minus_Glucose - R02738.kb*_alpha__minus_D_minus_Glucose_space_6_minus_phosphate; R03270 = R03270.kf*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate*Enzyme_space_N6_minus__space_lipoyl_space_lysine - R03270.kb*_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_*Thiamin_space_diphosphate; R00200 = R00200.kf*Pyruvate - R00200.kb*Phosphoenolpyruvate; R00658 = R00658.kf*_space_2_minus_Phospho_minus_D_minus_glycerate - R00658.kb*Phosphoenolpyruvate; // variable properties default.sbmlRole="compartment"; uVol.sbmlRole="compartment"; E2_space_3_space_1_space_12.sbmlRole="species"; E2_space_3_space_1_space_12.sbmlCompartment="uVol"; E1_space_8_space_1_space_4.sbmlRole="species"; E1_space_8_space_1_space_4.sbmlCompartment="uVol"; E5_space_3_space_1_space_1.sbmlRole="species"; E5_space_3_space_1_space_1.sbmlCompartment="uVol"; E5_space_3_space_1_space_9.sbmlRole="species"; E5_space_3_space_1_space_9.sbmlCompartment="uVol"; E1_space_2_space_4_space_1.sbmlRole="species"; E1_space_2_space_4_space_1.sbmlCompartment="uVol"; E4_space_1_space_2_space_13.sbmlRole="species"; E4_space_1_space_2_space_13.sbmlCompartment="uVol"; E2_space_7_space_2_space_3.sbmlRole="species"; E2_space_7_space_2_space_3.sbmlCompartment="uVol"; E5_space_4_space_2_space_1.sbmlRole="species"; E5_space_4_space_2_space_1.sbmlCompartment="uVol"; E4_space_2_space_1_space_11.sbmlRole="species"; E4_space_2_space_1_space_11.sbmlCompartment="uVol"; E2_space_7_space_1_space_40.sbmlRole="species"; E2_space_7_space_1_space_40.sbmlCompartment="uVol"; E1_space_2_space_1_space_12.sbmlRole="species"; E1_space_2_space_1_space_12.sbmlCompartment="uVol"; E2_space_7_space_1_space_11.sbmlRole="species"; E2_space_7_space_1_space_11.sbmlCompartment="uVol"; E2_space_7_space_1_space_69.sbmlRole="species"; E2_space_7_space_1_space_69.sbmlCompartment="uVol"; Acetyl_minus_CoA.sbmlRole="species"; Acetyl_minus_CoA.sbmlCompartment="uVol"; Glycerone_space_phosphate.sbmlRole="species"; Glycerone_space_phosphate.sbmlCompartment="uVol"; Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine.sbmlRole="species"; Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine.sbmlCompartment="uVol"; xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species"; xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlName="_beta__minus_D_minus_Glucose_space_6_minus_phosphate"; xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol"; xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_.sbmlRole="species"; xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_.sbmlName="_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_"; xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_.sbmlCompartment="uVol"; Enzyme_space_N6_minus__space_lipoyl_space_lysine.sbmlRole="species"; Enzyme_space_N6_minus__space_lipoyl_space_lysine.sbmlCompartment="uVol"; Thiamin_space_diphosphate.sbmlRole="species"; Thiamin_space_diphosphate.sbmlCompartment="uVol"; xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlRole="species"; xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlName="_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate"; xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlCompartment="uVol"; xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species"; xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlName="_alpha__minus_D_minus_Glucose_space_6_minus_phosphate"; xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol"; xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species"; xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate.sbmlName="_beta__minus_D_minus_Fructose_space_6_minus_phosphate"; xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol"; xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlRole="species"; xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlName="_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate"; xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlCompartment="uVol"; xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlRole="species"; xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlName="_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal"; xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlCompartment="uVol"; xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate.sbmlRole="species"; xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate.sbmlName="_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate"; xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate.sbmlCompartment="uVol"; xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlRole="species"; xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlName="_space_3_minus_Phospho_minus_D_minus_glycerate"; xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlCompartment="uVol"; xxx_space_2_minus_Phospho_minus_D_minus_glycerate.sbmlRole="species"; xxx_space_2_minus_Phospho_minus_D_minus_glycerate.sbmlName="_space_2_minus_Phospho_minus_D_minus_glycerate"; xxx_space_2_minus_Phospho_minus_D_minus_glycerate.sbmlCompartment="uVol"; Phosphoenolpyruvate.sbmlRole="species"; Phosphoenolpyruvate.sbmlCompartment="uVol"; Pyruvate.sbmlRole="species"; Pyruvate.sbmlCompartment="uVol"; D_minus_Glucose.sbmlRole="species"; D_minus_Glucose.sbmlCompartment="uVol"; R04779.sbmlRole="rate"; R04779.kf.sbmlRole="rate"; R04779.kb.sbmlRole="rate"; R03321.sbmlRole="rate"; R03321.kf.sbmlRole="rate"; R03321.kb.sbmlRole="rate"; R01015.sbmlRole="rate"; R01015.kf.sbmlRole="rate"; R01015.kb.sbmlRole="rate"; R01070.sbmlRole="rate"; R01070.kf.sbmlRole="rate"; R01070.kb.sbmlRole="rate"; R02739.sbmlRole="rate"; R02739.kf.sbmlRole="rate"; R02739.kb.sbmlRole="rate"; R07618.sbmlRole="rate"; R07618.kf.sbmlRole="rate"; R07618.kb.sbmlRole="rate"; R01512.sbmlRole="rate"; R01512.kf.sbmlRole="rate"; R01512.kb.sbmlRole="rate"; R01061.sbmlRole="rate"; R01061.kf.sbmlRole="rate"; R01061.kb.sbmlRole="rate"; R00014.sbmlRole="rate"; R00014.kf.sbmlRole="rate"; R00014.kb.sbmlRole="rate"; R01518.sbmlRole="rate"; R01518.kf.sbmlRole="rate"; R01518.kb.sbmlRole="rate"; R02569.sbmlRole="rate"; R02569.kf.sbmlRole="rate"; R02569.kb.sbmlRole="rate"; R02740.sbmlRole="rate"; R02740.kf.sbmlRole="rate"; R02740.kb.sbmlRole="rate"; R02738.sbmlRole="rate"; R02738.kf.sbmlRole="rate"; R02738.kb.sbmlRole="rate"; R03270.sbmlRole="rate"; R03270.kf.sbmlRole="rate"; R03270.kb.sbmlRole="rate"; R00200.sbmlRole="rate"; R00200.kf.sbmlRole="rate"; R00200.kb.sbmlRole="rate"; R00658.sbmlRole="rate"; R00658.kf.sbmlRole="rate"; R00658.kb.sbmlRole="rate"; }