// This model generated automatically from SBML
// WARNING: Renamed variable _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal to xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate to xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Phospho_minus_D_minus_glycerate to xxx_space_3_minus_Phospho_minus_D_minus_glycerate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01068: D_minus_Fructose_space_1_space_6_minus_bisphosphate <=> Glycerone_space_phosphate _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal 
// R01067: D_minus_Fructose_space_6_minus_phosphate _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal <=> D_minus_Erythrose_space_4_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate 
// R01056: D_minus_Ribose_space_5_minus_phosphate <=> D_minus_Ribulose_space_5_minus_phosphate 
// R01641: D_minus_Sedoheptulose_space_7_minus_phosphate _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal <=> D_minus_Ribose_space_5_minus_phosphate D_minus_Xylulose_space_5_minus_phosphate 
// R01015: _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal <=> Glycerone_space_phosphate 
// R01529: D_minus_Ribulose_space_5_minus_phosphate <=> D_minus_Xylulose_space_5_minus_phosphate 
// R00200: Pyruvate <=> Phosphoenolpyruvate 
// R01829: D_minus_Sedoheptulose_space_1_space_7_minus_bisphosphate <=> Glycerone_space_phosphate D_minus_Erythrose_space_4_minus_phosphate 
// R01512: _space_3_minus_Phospho_minus_D_minus_glycerate <=> _space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_2_space_3 = 0 M;
  real E2_space_7_space_1_space_40 = 0 M;
  real E2_space_2_space_1_space_1 = 0 M;
  real E5_space_3_space_1_space_6 = 0 M;
  real E4_space_1_space_2_space_13 = 0 M;
  real E5_space_1_space_3_space_1 = 0 M;
  real E5_space_3_space_1_space_1 = 0 M;
  real D_minus_Fructose_space_6_minus_phosphate(time) M;
  real D_minus_Fructose_space_1_space_6_minus_bisphosphate(time) M;
  real xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal(time) M;
  real xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate(time) M;
  real xxx_space_3_minus_Phospho_minus_D_minus_glycerate(time) M;
  real Phosphoenolpyruvate(time) M;
  real Pyruvate(time) M;
  real D_minus_Sedoheptulose_space_1_space_7_minus_bisphosphate(time) M;
  real D_minus_Sedoheptulose_space_7_minus_phosphate(time) M;
  real D_minus_Ribose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Erythrose_space_4_minus_phosphate(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real Glycerone_space_phosphate(time) M;
  real R01068(time) katal;
  extern real R01068.kf;
  extern real R01068.kb;
  real R01067(time) katal;
  extern real R01067.kf;
  extern real R01067.kb;
  real R01056(time) katal;
  extern real R01056.kf;
  extern real R01056.kb;
  real R01641(time) katal;
  extern real R01641.kf;
  extern real R01641.kb;
  real R01015(time) katal;
  extern real R01015.kf;
  extern real R01015.kb;
  real R01529(time) katal;
  extern real R01529.kf;
  extern real R01529.kb;
  real R00200(time) katal;
  extern real R00200.kf;
  extern real R00200.kb;
  real R01829(time) katal;
  extern real R01829.kf;
  extern real R01829.kb;
  real R01512(time) katal;
  extern real R01512.kf;
  extern real R01512.kb;

  // equations
  when (time=time.min) D_minus_Fructose_space_6_minus_phosphate = 0;
  (D_minus_Fructose_space_6_minus_phosphate*uVol):time = -1*R01067;
  when (time=time.min) D_minus_Fructose_space_1_space_6_minus_bisphosphate = 0;
  (D_minus_Fructose_space_1_space_6_minus_bisphosphate*uVol):time = -1*R01068;
  when (time=time.min) xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal = 0;
  (xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal*uVol):time = R01068 + -1*R01067 + -1*R01641 + -1*R01015;
  when (time=time.min) xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate = 0;
  (xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate*uVol):time = R01512;
  when (time=time.min) xxx_space_3_minus_Phospho_minus_D_minus_glycerate = 0;
  (xxx_space_3_minus_Phospho_minus_D_minus_glycerate*uVol):time = -1*R01512;
  when (time=time.min) Phosphoenolpyruvate = 0;
  (Phosphoenolpyruvate*uVol):time = R00200;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = -1*R00200;
  when (time=time.min) D_minus_Sedoheptulose_space_1_space_7_minus_bisphosphate = 0;
  (D_minus_Sedoheptulose_space_1_space_7_minus_bisphosphate*uVol):time = -1*R01829;
  when (time=time.min) D_minus_Sedoheptulose_space_7_minus_phosphate = 0;
  (D_minus_Sedoheptulose_space_7_minus_phosphate*uVol):time = -1*R01641;
  when (time=time.min) D_minus_Ribose_space_5_minus_phosphate = 0;
  (D_minus_Ribose_space_5_minus_phosphate*uVol):time = -1*R01056 + R01641;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  (D_minus_Ribulose_space_5_minus_phosphate*uVol):time = R01056 + -1*R01529;
  when (time=time.min) D_minus_Erythrose_space_4_minus_phosphate = 0;
  (D_minus_Erythrose_space_4_minus_phosphate*uVol):time = R01067 + R01829;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  (D_minus_Xylulose_space_5_minus_phosphate*uVol):time = R01067 + R01641 + R01529;
  when (time=time.min) Glycerone_space_phosphate = 0;
  (Glycerone_space_phosphate*uVol):time = R01068 + R01015 + R01829;
  R01068 = R01068.kf*D_minus_Fructose_space_1_space_6_minus_bisphosphate - R01068.kb*Glycerone_space_phosphate*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal;
  R01067 = R01067.kf*D_minus_Fructose_space_6_minus_phosphate*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal - R01067.kb*D_minus_Erythrose_space_4_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate;
  R01056 = R01056.kf*D_minus_Ribose_space_5_minus_phosphate - R01056.kb*D_minus_Ribulose_space_5_minus_phosphate;
  R01641 = R01641.kf*D_minus_Sedoheptulose_space_7_minus_phosphate*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal - R01641.kb*D_minus_Ribose_space_5_minus_phosphate*D_minus_Xylulose_space_5_minus_phosphate;
  R01015 = R01015.kf*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal - R01015.kb*Glycerone_space_phosphate;
  R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R00200 = R00200.kf*Pyruvate - R00200.kb*Phosphoenolpyruvate;
  R01829 = R01829.kf*D_minus_Sedoheptulose_space_1_space_7_minus_bisphosphate - R01829.kb*Glycerone_space_phosphate*D_minus_Erythrose_space_4_minus_phosphate;
  R01512 = R01512.kf*_space_3_minus_Phospho_minus_D_minus_glycerate - R01512.kb*_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_2_space_3.sbmlRole="species";
  E2_space_7_space_2_space_3.sbmlCompartment="uVol";
  E2_space_7_space_1_space_40.sbmlRole="species";
  E2_space_7_space_1_space_40.sbmlCompartment="uVol";
  E2_space_2_space_1_space_1.sbmlRole="species";
  E2_space_2_space_1_space_1.sbmlCompartment="uVol";
  E5_space_3_space_1_space_6.sbmlRole="species";
  E5_space_3_space_1_space_6.sbmlCompartment="uVol";
  E4_space_1_space_2_space_13.sbmlRole="species";
  E4_space_1_space_2_space_13.sbmlCompartment="uVol";
  E5_space_1_space_3_space_1.sbmlRole="species";
  E5_space_1_space_3_space_1.sbmlCompartment="uVol";
  E5_space_3_space_1_space_1.sbmlRole="species";
  E5_space_3_space_1_space_1.sbmlCompartment="uVol";
  D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species";
  D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlRole="species";
  D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlCompartment="uVol";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlRole="species";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlName="_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlCompartment="uVol";
  xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate.sbmlRole="species";
  xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate.sbmlName="_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate";
  xxx_space_3_minus_Phospho_minus_D_minus_glyceroyl_space_phosphate.sbmlCompartment="uVol";
  xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlRole="species";
  xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlName="_space_3_minus_Phospho_minus_D_minus_glycerate";
  xxx_space_3_minus_Phospho_minus_D_minus_glycerate.sbmlCompartment="uVol";
  Phosphoenolpyruvate.sbmlRole="species";
  Phosphoenolpyruvate.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  D_minus_Sedoheptulose_space_1_space_7_minus_bisphosphate.sbmlRole="species";
  D_minus_Sedoheptulose_space_1_space_7_minus_bisphosphate.sbmlCompartment="uVol";
  D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlRole="species";
  D_minus_Sedoheptulose_space_7_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlRole="species";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  Glycerone_space_phosphate.sbmlRole="species";
  Glycerone_space_phosphate.sbmlCompartment="uVol";
  R01068.sbmlRole="rate";
  R01068.kf.sbmlRole="rate";
  R01068.kb.sbmlRole="rate";
  R01067.sbmlRole="rate";
  R01067.kf.sbmlRole="rate";
  R01067.kb.sbmlRole="rate";
  R01056.sbmlRole="rate";
  R01056.kf.sbmlRole="rate";
  R01056.kb.sbmlRole="rate";
  R01641.sbmlRole="rate";
  R01641.kf.sbmlRole="rate";
  R01641.kb.sbmlRole="rate";
  R01015.sbmlRole="rate";
  R01015.kf.sbmlRole="rate";
  R01015.kb.sbmlRole="rate";
  R01529.sbmlRole="rate";
  R01529.kf.sbmlRole="rate";
  R01529.kb.sbmlRole="rate";
  R00200.sbmlRole="rate";
  R00200.kf.sbmlRole="rate";
  R00200.kb.sbmlRole="rate";
  R01829.sbmlRole="rate";
  R01829.kf.sbmlRole="rate";
  R01829.kb.sbmlRole="rate";
  R01512.sbmlRole="rate";
  R01512.kf.sbmlRole="rate";
  R01512.kb.sbmlRole="rate";
}