// This model generated automatically from SBML
// WARNING: Renamed variable _space_5_minus_L_minus_Glutamyl_minus_taurine to xxx_space_5_minus_L_minus_Glutamyl_minus_taurine due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05320: Taurine <=> Sulfite Aminoacetaldehyde 
// R00315: Acetate => Acetyl_space_phosphate 
// R01687: Taurine <=> _space_5_minus_L_minus_Glutamyl_minus_taurine 
// R00230: Acetyl_minus_CoA => Acetyl_space_phosphate 
// R00396: L_minus_Alanine <=> Pyruvate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_3_space_1_space_8 = 0 M;
  real E2_space_7_space_2_space_1 = 0 M;
  real E1_space_14_space_11_space_17 = 0 M;
  real E1_space_4_space_1_space_1 = 0 M;
  real E2_space_3_space_2_space_2 = 0 M;
  real Acetyl_minus_CoA(time) M;
  real Aminoacetaldehyde(time) M;
  real Sulfite(time) M;
  real Acetyl_space_phosphate(time) M;
  real Acetate(time) M;
  real Taurine(time) M;
  real Pyruvate(time) M;
  real L_minus_Alanine(time) M;
  real xxx_space_5_minus_L_minus_Glutamyl_minus_taurine(time) M;
  real R05320(time) katal;
  extern real R05320.kf;
  extern real R05320.kb;
  real R00315(time) katal;
  extern real R00315.kf;
  extern real R00315.kb;
  real R01687(time) katal;
  extern real R01687.kf;
  extern real R01687.kb;
  real R00230(time) katal;
  extern real R00230.kf;
  extern real R00230.kb;
  real R00396(time) katal;
  extern real R00396.kf;
  extern real R00396.kb;

  // equations
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = -1*R00230;
  when (time=time.min) Aminoacetaldehyde = 0;
  (Aminoacetaldehyde*uVol):time = R05320;
  when (time=time.min) Sulfite = 0;
  (Sulfite*uVol):time = R05320;
  when (time=time.min) Acetyl_space_phosphate = 0;
  (Acetyl_space_phosphate*uVol):time = R00315 + R00230;
  when (time=time.min) Acetate = 0;
  (Acetate*uVol):time = -1*R00315;
  when (time=time.min) Taurine = 0;
  (Taurine*uVol):time = -1*R05320 + -1*R01687;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = R00396;
  when (time=time.min) L_minus_Alanine = 0;
  (L_minus_Alanine*uVol):time = -1*R00396;
  when (time=time.min) xxx_space_5_minus_L_minus_Glutamyl_minus_taurine = 0;
  (xxx_space_5_minus_L_minus_Glutamyl_minus_taurine*uVol):time = R01687;
  R05320 = R05320.kf*Taurine - R05320.kb*Sulfite*Aminoacetaldehyde;
  R00315 = R00315.kf*Acetate - R00315.kb*Acetyl_space_phosphate;
  R01687 = R01687.kf*Taurine - R01687.kb*_space_5_minus_L_minus_Glutamyl_minus_taurine;
  R00230 = R00230.kf*Acetyl_minus_CoA - R00230.kb*Acetyl_space_phosphate;
  R00396 = R00396.kf*L_minus_Alanine - R00396.kb*Pyruvate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_3_space_1_space_8.sbmlRole="species";
  E2_space_3_space_1_space_8.sbmlCompartment="uVol";
  E2_space_7_space_2_space_1.sbmlRole="species";
  E2_space_7_space_2_space_1.sbmlCompartment="uVol";
  E1_space_14_space_11_space_17.sbmlRole="species";
  E1_space_14_space_11_space_17.sbmlCompartment="uVol";
  E1_space_4_space_1_space_1.sbmlRole="species";
  E1_space_4_space_1_space_1.sbmlCompartment="uVol";
  E2_space_3_space_2_space_2.sbmlRole="species";
  E2_space_3_space_2_space_2.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  Aminoacetaldehyde.sbmlRole="species";
  Aminoacetaldehyde.sbmlCompartment="uVol";
  Sulfite.sbmlRole="species";
  Sulfite.sbmlCompartment="uVol";
  Acetyl_space_phosphate.sbmlRole="species";
  Acetyl_space_phosphate.sbmlCompartment="uVol";
  Acetate.sbmlRole="species";
  Acetate.sbmlCompartment="uVol";
  Taurine.sbmlRole="species";
  Taurine.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  L_minus_Alanine.sbmlRole="species";
  L_minus_Alanine.sbmlCompartment="uVol";
  xxx_space_5_minus_L_minus_Glutamyl_minus_taurine.sbmlRole="species";
  xxx_space_5_minus_L_minus_Glutamyl_minus_taurine.sbmlName="_space_5_minus_L_minus_Glutamyl_minus_taurine";
  xxx_space_5_minus_L_minus_Glutamyl_minus_taurine.sbmlCompartment="uVol";
  R05320.sbmlRole="rate";
  R05320.kf.sbmlRole="rate";
  R05320.kb.sbmlRole="rate";
  R00315.sbmlRole="rate";
  R00315.kf.sbmlRole="rate";
  R00315.kb.sbmlRole="rate";
  R01687.sbmlRole="rate";
  R01687.kf.sbmlRole="rate";
  R01687.kb.sbmlRole="rate";
  R00230.sbmlRole="rate";
  R00230.kf.sbmlRole="rate";
  R00230.kb.sbmlRole="rate";
  R00396.sbmlRole="rate";
  R00396.kf.sbmlRole="rate";
  R00396.kb.sbmlRole="rate";
}