// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus_Oxobutanoate to xxx_space_2_minus_Oxobutanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate to xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid to xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate to xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate to xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid to xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Methyl_minus_2_minus_oxopentanoate to xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01090: L_minus_Leucine => _space_4_minus_Methyl_minus_2_minus_oxopentanoate 
// R05070: _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate <=> _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid 
// R03657: L_minus_Leucine <=> L_minus_Leucyl_minus_tRNA 
// R00014: Pyruvate <=> _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate 
// R03665: L_minus_Valine <=> L_minus_Valyl_minus_tRNA_space_Val_space_ 
// R02199: L_minus_Isoleucine <=> _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid 
// R00996: L_minus_Threonine <=> _space_2_minus_Oxobutanoate 
// R03656: L_minus_Isoleucine <=> L_minus_Isoleucyl_minus_tRNA_space_Ile_space_ 
// R04441: _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate <=> _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid 
// R01214: L_minus_Valine <=> _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_6_space_1_space_42 = 0 M;
  real E4_space_2_space_1_space_9 = 0 M;
  real E6_space_1_space_1_space_5 = 0 M;
  real E6_space_1_space_1_space_9 = 0 M;
  real E1_space_2_space_4_space_1 = 0 M;
  real E6_space_1_space_1_space_4 = 0 M;
  real E4_space_3_space_1_space_19 = 0 M;
  real xxx_space_2_minus_Oxobutanoate(time) M;
  real xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate(time) M;
  real xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid(time) M;
  real L_minus_Isoleucine(time) M;
  real L_minus_Isoleucyl_minus_tRNA_space_Ile_space_(time) M;
  real xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate(time) M;
  real xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate(time) M;
  real xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid(time) M;
  real L_minus_Valine(time) M;
  real L_minus_Valyl_minus_tRNA_space_Val_space_(time) M;
  real Pyruvate(time) M;
  real xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate(time) M;
  real L_minus_Leucine(time) M;
  real L_minus_Leucyl_minus_tRNA(time) M;
  real L_minus_Threonine(time) M;
  real R01090(time) katal;
  extern real R01090.kf;
  extern real R01090.kb;
  real R05070(time) katal;
  extern real R05070.kf;
  extern real R05070.kb;
  real R03657(time) katal;
  extern real R03657.kf;
  extern real R03657.kb;
  real R00014(time) katal;
  extern real R00014.kf;
  extern real R00014.kb;
  real R03665(time) katal;
  extern real R03665.kf;
  extern real R03665.kb;
  real R02199(time) katal;
  extern real R02199.kf;
  extern real R02199.kb;
  real R00996(time) katal;
  extern real R00996.kf;
  extern real R00996.kb;
  real R03656(time) katal;
  extern real R03656.kf;
  extern real R03656.kb;
  real R04441(time) katal;
  extern real R04441.kf;
  extern real R04441.kb;
  real R01214(time) katal;
  extern real R01214.kf;
  extern real R01214.kb;

  // equations
  when (time=time.min) xxx_space_2_minus_Oxobutanoate = 0;
  (xxx_space_2_minus_Oxobutanoate*uVol):time = R00996;
  when (time=time.min) xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate = 0;
  (xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate*uVol):time = -1*R05070;
  when (time=time.min) xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid = 0;
  (xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid*uVol):time = R05070 + R02199;
  when (time=time.min) L_minus_Isoleucine = 0;
  (L_minus_Isoleucine*uVol):time = -1*R02199 + -1*R03656;
  when (time=time.min) L_minus_Isoleucyl_minus_tRNA_space_Ile_space_ = 0;
  (L_minus_Isoleucyl_minus_tRNA_space_Ile_space_*uVol):time = R03656;
  when (time=time.min) xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate = 0;
  (xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate*uVol):time = R00014;
  when (time=time.min) xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate = 0;
  (xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate*uVol):time = -1*R04441;
  when (time=time.min) xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid = 0;
  (xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid*uVol):time = R04441 + R01214;
  when (time=time.min) L_minus_Valine = 0;
  (L_minus_Valine*uVol):time = -1*R03665 + -1*R01214;
  when (time=time.min) L_minus_Valyl_minus_tRNA_space_Val_space_ = 0;
  (L_minus_Valyl_minus_tRNA_space_Val_space_*uVol):time = R03665;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = -1*R00014;
  when (time=time.min) xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate = 0;
  (xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate*uVol):time = R01090;
  when (time=time.min) L_minus_Leucine = 0;
  (L_minus_Leucine*uVol):time = -1*R01090 + -1*R03657;
  when (time=time.min) L_minus_Leucyl_minus_tRNA = 0;
  (L_minus_Leucyl_minus_tRNA*uVol):time = R03657;
  when (time=time.min) L_minus_Threonine = 0;
  (L_minus_Threonine*uVol):time = -1*R00996;
  R01090 = R01090.kf*L_minus_Leucine - R01090.kb*_space_4_minus_Methyl_minus_2_minus_oxopentanoate;
  R05070 = R05070.kf*_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate - R05070.kb*_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid;
  R03657 = R03657.kf*L_minus_Leucine - R03657.kb*L_minus_Leucyl_minus_tRNA;
  R00014 = R00014.kf*Pyruvate - R00014.kb*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate;
  R03665 = R03665.kf*L_minus_Valine - R03665.kb*L_minus_Valyl_minus_tRNA_space_Val_space_;
  R02199 = R02199.kf*L_minus_Isoleucine - R02199.kb*_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid;
  R00996 = R00996.kf*L_minus_Threonine - R00996.kb*_space_2_minus_Oxobutanoate;
  R03656 = R03656.kf*L_minus_Isoleucine - R03656.kb*L_minus_Isoleucyl_minus_tRNA_space_Ile_space_;
  R04441 = R04441.kf*_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate - R04441.kb*_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid;
  R01214 = R01214.kf*L_minus_Valine - R01214.kb*_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_6_space_1_space_42.sbmlRole="species";
  E2_space_6_space_1_space_42.sbmlCompartment="uVol";
  E4_space_2_space_1_space_9.sbmlRole="species";
  E4_space_2_space_1_space_9.sbmlCompartment="uVol";
  E6_space_1_space_1_space_5.sbmlRole="species";
  E6_space_1_space_1_space_5.sbmlCompartment="uVol";
  E6_space_1_space_1_space_9.sbmlRole="species";
  E6_space_1_space_1_space_9.sbmlCompartment="uVol";
  E1_space_2_space_4_space_1.sbmlRole="species";
  E1_space_2_space_4_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_4.sbmlRole="species";
  E6_space_1_space_1_space_4.sbmlCompartment="uVol";
  E4_space_3_space_1_space_19.sbmlRole="species";
  E4_space_3_space_1_space_19.sbmlCompartment="uVol";
  xxx_space_2_minus_Oxobutanoate.sbmlRole="species";
  xxx_space_2_minus_Oxobutanoate.sbmlName="_space_2_minus_Oxobutanoate";
  xxx_space_2_minus_Oxobutanoate.sbmlCompartment="uVol";
  xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate.sbmlRole="species";
  xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate.sbmlName="_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate";
  xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate.sbmlCompartment="uVol";
  xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid.sbmlRole="species";
  xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid.sbmlName="_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid";
  xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid.sbmlCompartment="uVol";
  L_minus_Isoleucine.sbmlRole="species";
  L_minus_Isoleucine.sbmlCompartment="uVol";
  L_minus_Isoleucyl_minus_tRNA_space_Ile_space_.sbmlRole="species";
  L_minus_Isoleucyl_minus_tRNA_space_Ile_space_.sbmlCompartment="uVol";
  xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlRole="species";
  xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlName="_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate";
  xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlCompartment="uVol";
  xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate.sbmlRole="species";
  xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate.sbmlName="_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate";
  xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate.sbmlCompartment="uVol";
  xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid.sbmlRole="species";
  xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid.sbmlName="_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid";
  xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid.sbmlCompartment="uVol";
  L_minus_Valine.sbmlRole="species";
  L_minus_Valine.sbmlCompartment="uVol";
  L_minus_Valyl_minus_tRNA_space_Val_space_.sbmlRole="species";
  L_minus_Valyl_minus_tRNA_space_Val_space_.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate.sbmlRole="species";
  xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate.sbmlName="_space_4_minus_Methyl_minus_2_minus_oxopentanoate";
  xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate.sbmlCompartment="uVol";
  L_minus_Leucine.sbmlRole="species";
  L_minus_Leucine.sbmlCompartment="uVol";
  L_minus_Leucyl_minus_tRNA.sbmlRole="species";
  L_minus_Leucyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Threonine.sbmlRole="species";
  L_minus_Threonine.sbmlCompartment="uVol";
  R01090.sbmlRole="rate";
  R01090.kf.sbmlRole="rate";
  R01090.kb.sbmlRole="rate";
  R05070.sbmlRole="rate";
  R05070.kf.sbmlRole="rate";
  R05070.kb.sbmlRole="rate";
  R03657.sbmlRole="rate";
  R03657.kf.sbmlRole="rate";
  R03657.kb.sbmlRole="rate";
  R00014.sbmlRole="rate";
  R00014.kf.sbmlRole="rate";
  R00014.kb.sbmlRole="rate";
  R03665.sbmlRole="rate";
  R03665.kf.sbmlRole="rate";
  R03665.kb.sbmlRole="rate";
  R02199.sbmlRole="rate";
  R02199.kf.sbmlRole="rate";
  R02199.kb.sbmlRole="rate";
  R00996.sbmlRole="rate";
  R00996.kf.sbmlRole="rate";
  R00996.kb.sbmlRole="rate";
  R03656.sbmlRole="rate";
  R03656.kf.sbmlRole="rate";
  R03656.kb.sbmlRole="rate";
  R04441.sbmlRole="rate";
  R04441.kf.sbmlRole="rate";
  R04441.kb.sbmlRole="rate";
  R01214.sbmlRole="rate";
  R01214.kf.sbmlRole="rate";
  R01214.kb.sbmlRole="rate";
}